Wall clock time and date at job start Wed Apr 1 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28869 * 125.95560 * 2 1 4 4 C 1.30929 * 109.00235 * 180.28522 * 3 2 1 5 5 N 1.32954 * 108.47543 * 359.73127 * 4 3 2 6 6 C 1.32147 * 107.31646 * 359.97438 * 5 4 3 7 7 C 1.47774 * 126.44277 * 180.02562 * 6 5 4 8 8 O 1.21558 * 120.00119 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99820 * 0.02562 * 7 6 5 10 10 C 1.46503 * 125.27701 * 179.97438 * 9 7 6 11 11 C 1.55798 * 108.42156 * 182.19282 * 10 9 7 12 12 H 1.09000 * 113.30302 * 250.11303 * 11 10 9 13 13 C 1.54600 * 108.43693 * 123.12444 * 11 10 9 14 14 C 1.53861 * 103.82396 * 277.18379 * 13 11 10 15 15 N 1.46852 * 106.61421 * 331.90696 * 14 13 11 16 16 C 1.34777 * 125.32554 * 198.18507 * 15 14 13 17 17 O 1.21283 * 119.99750 * 179.69498 * 16 15 14 18 18 C 1.50702 * 119.99928 * 359.97438 * 16 15 14 19 19 C 1.52996 * 109.47159 * 179.72352 * 18 16 15 20 20 C 1.50697 * 109.47491 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99437 * 359.97438 * 20 19 18 22 22 C 1.37869 * 120.00278 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00194 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00110 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47099 * 59.99852 * 24 22 20 26 26 H 1.48497 * 109.47322 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47165 * 300.00026 * 24 22 20 28 28 C 1.46124 * 109.34955 * 17.92641 * 15 14 13 29 29 H 1.09000 * 110.72114 * 238.26350 * 28 15 14 30 30 C 1.46673 * 125.28464 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.47119 * 270.17091 * 1 2 3 32 32 H 1.08997 * 109.47144 * 30.17675 * 1 2 3 33 33 H 1.09002 * 109.47270 * 150.17569 * 1 2 3 34 34 H 1.08004 * 125.75811 * 179.74633 * 4 3 2 35 35 H 1.09008 * 109.71693 * 302.02823 * 10 9 7 36 36 H 1.08997 * 109.72549 * 62.63691 * 10 9 7 37 37 H 1.09003 * 110.56608 * 35.94224 * 13 11 10 38 38 H 1.08992 * 110.57458 * 158.80819 * 13 11 10 39 39 H 1.09003 * 110.09863 * 212.56229 * 14 13 11 40 40 H 1.09003 * 109.90918 * 91.15139 * 14 13 11 41 41 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 42 42 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 43 43 H 1.09004 * 109.47066 * 299.99797 * 19 18 16 44 44 H 1.09000 * 109.47234 * 59.99288 * 19 18 16 45 45 H 0.97004 * 120.00291 * 180.02562 * 23 22 20 46 46 H 1.09003 * 109.91342 * 43.67167 * 30 9 7 47 47 H 1.08995 * 110.09046 * 282.46981 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2216 1.0432 0.0000 4 6 3.4740 0.6614 -0.0062 5 7 3.5093 -0.6677 -0.0043 6 6 2.2587 -1.0944 0.0037 7 6 1.8118 -2.5029 0.0091 8 8 0.6246 -2.7639 0.0159 9 7 2.7205 -3.4982 0.0064 10 6 2.4078 -4.9295 0.0116 11 6 3.7461 -5.7256 0.0626 12 1 3.9723 -6.2486 -0.8665 13 6 3.7174 -6.6513 1.3005 14 6 4.1490 -5.7325 2.4568 15 7 5.0095 -4.6966 1.8711 16 6 5.8644 -3.9135 2.5584 17 8 6.5353 -3.0893 1.9738 18 6 5.9913 -4.0662 4.0522 19 6 7.0257 -3.0704 4.5807 20 6 7.1522 -3.2227 6.0746 21 1 6.5542 -3.9561 6.5951 22 6 8.0312 -2.4258 6.7768 23 7 8.7597 -1.5330 6.1429 24 14 8.1874 -2.6140 8.6288 25 1 8.6214 -3.9972 8.9509 26 1 9.1915 -1.6476 9.1417 27 1 6.8731 -2.3466 9.2661 28 6 4.7984 -4.6519 0.4259 29 1 5.7329 -4.8305 -0.1061 30 6 4.1760 -3.3166 -0.0022 31 1 -0.3633 0.0031 1.0276 32 1 -0.3633 0.8884 -0.5166 33 1 -0.3634 -0.8916 -0.5111 34 1 4.3333 1.3157 -0.0116 35 1 1.8026 -5.1705 0.8856 36 1 1.8635 -5.1904 -0.8959 37 1 2.7111 -7.0351 1.4684 38 1 4.4262 -7.4709 1.1824 39 1 4.7046 -6.3029 3.2011 40 1 3.2719 -5.2748 2.9144 41 1 5.0266 -3.8709 4.5207 42 1 6.3108 -5.0813 4.2878 43 1 7.9904 -3.2657 4.1123 44 1 6.7063 -2.0553 4.3450 45 1 9.3785 -0.9726 6.6369 46 1 4.4565 -2.5333 0.7020 47 1 4.5145 -3.0533 -1.0042 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270902069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:24 Heat of formation + Delta-G solvation = 37.835701 kcal Electronic energy + Delta-G solvation = -31343.746579 eV Core-core repulsion = 27143.000135 eV Total energy + Delta-G solvation = -4200.746444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.59392 -41.04394 -39.32815 -37.86755 -35.59198 -34.51920 -33.46222 -32.50911 -31.75717 -31.12184 -30.02320 -28.13987 -27.62482 -25.70747 -25.20547 -23.29177 -23.03946 -22.31507 -21.32815 -20.28505 -20.06437 -18.66903 -17.69854 -17.23760 -17.05559 -16.92902 -16.50126 -15.94305 -15.65157 -15.29959 -14.90211 -14.63171 -14.57853 -14.38529 -13.81950 -13.64698 -13.50909 -13.46865 -13.22517 -13.11292 -12.68582 -12.51327 -12.22758 -12.16541 -11.98012 -11.85041 -11.50898 -11.31272 -11.11416 -11.02459 -10.90414 -10.63094 -10.60759 -10.47267 -10.36421 -9.94103 -9.72821 -9.64712 -9.19008 -9.05050 -8.89686 -8.44883 -8.30297 -5.94826 -3.99330 0.88698 1.85539 2.30528 2.70007 2.96475 3.18639 3.22547 3.34872 3.39759 3.41476 3.69678 3.97512 4.16301 4.23240 4.34830 4.48119 4.59076 4.82229 4.84592 4.84895 4.96300 4.96769 5.19027 5.21144 5.23644 5.36326 5.39963 5.46246 5.56796 5.62413 5.64575 5.76539 5.83061 5.91162 6.01652 6.11329 6.19687 6.21423 6.23410 6.28206 6.59405 6.89641 7.01335 7.56084 7.74974 7.80283 7.87414 7.96785 8.08241 8.39283 8.72722 9.08682 9.64040 11.16002 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009918 B = 0.003232 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.441617 B = 8661.792840 C =10448.396382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.264 5.264 3 N -0.303 5.303 4 C 0.167 3.833 5 N -0.460 5.460 6 C 0.159 3.841 7 C 0.624 3.376 8 O -0.537 6.537 9 N -0.583 5.583 10 C 0.115 3.885 11 C -0.105 4.105 12 H 0.115 0.885 13 C -0.123 4.123 14 C 0.102 3.898 15 N -0.621 5.621 16 C 0.526 3.474 17 O -0.522 6.522 18 C -0.124 4.124 19 C 0.038 3.962 20 C -0.528 4.528 21 H 0.054 0.946 22 C 0.059 3.941 23 N -0.889 5.889 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.129 3.871 29 H 0.096 0.904 30 C 0.092 3.908 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.226 0.774 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.024 0.976 44 H 0.023 0.977 45 H 0.261 0.739 46 H 0.112 0.888 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.150 -7.141 -16.737 25.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.060 5.060 3 N -0.141 5.141 4 C -0.132 4.132 5 N -0.187 5.187 6 C -0.116 4.116 7 C 0.409 3.591 8 O -0.414 6.414 9 N -0.315 5.315 10 C -0.007 4.007 11 C -0.124 4.124 12 H 0.133 0.867 13 C -0.161 4.161 14 C -0.022 4.022 15 N -0.358 5.358 16 C 0.317 3.683 17 O -0.396 6.396 18 C -0.164 4.164 19 C 0.001 3.999 20 C -0.566 4.566 21 H 0.073 0.927 22 C -0.143 4.143 23 N -0.527 5.527 24 Si 0.720 3.280 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.203 1.203 28 C 0.024 3.976 29 H 0.114 0.886 30 C -0.031 4.031 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.242 0.758 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.042 0.958 44 H 0.041 0.959 45 H 0.071 0.929 46 H 0.130 0.870 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.201 -6.136 -16.956 24.921 hybrid contribution 0.022 -0.040 1.119 1.120 sum -17.179 -6.176 -15.837 24.168 Atomic orbital electron populations 1.22460 0.71706 1.06255 1.05407 1.47046 1.09304 1.02619 1.46991 1.74233 1.04431 1.13434 1.22007 1.26062 0.94116 0.90637 1.02403 1.71422 1.17827 1.11376 1.18087 1.23960 0.87058 0.91946 1.08629 1.15879 0.84535 0.81169 0.77563 1.90790 1.15269 1.83277 1.52051 1.47692 1.07778 1.05716 1.70267 1.22328 0.96919 0.78621 1.02872 1.23270 0.93360 0.95695 1.00091 0.86698 1.22554 1.02870 0.97630 0.93033 1.21939 0.94538 0.89279 0.96417 1.48408 1.42731 1.38383 1.06317 1.21340 0.77043 0.79026 0.90864 1.90698 1.43412 1.34440 1.71064 1.21856 1.03187 1.03385 0.87936 1.18893 0.92846 0.93390 0.94780 1.21167 1.23008 1.19881 0.92559 0.92738 1.25009 0.95694 0.95253 0.98321 1.69986 1.25063 1.21984 1.35698 0.86668 0.77795 0.77854 0.85701 1.20242 1.21263 1.20295 1.21836 0.98351 0.93590 0.83860 0.88578 1.22591 0.77388 0.99422 1.03710 0.89072 0.88400 0.86777 0.75789 0.90376 0.90698 0.89425 0.89936 0.90077 0.91915 0.90520 0.90307 0.95773 0.95854 0.92895 0.86955 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.85 59.84 0.65 1.35 16 2 N -0.26 -3.34 3.74 -65.63 -0.25 -3.58 16 3 N -0.30 -4.05 12.08 29.27 0.35 -3.70 16 4 C 0.17 2.24 13.03 -91.89 -1.20 1.04 16 5 N -0.46 -6.93 8.63 -12.46 -0.11 -7.04 16 6 C 0.16 2.25 7.66 -155.26 -1.19 1.06 16 7 C 0.62 8.43 7.84 -12.36 -0.10 8.34 16 8 O -0.54 -7.49 14.99 5.31 0.08 -7.41 16 9 N -0.58 -7.04 3.31 -172.66 -0.57 -7.61 16 10 C 0.11 1.02 6.28 -2.55 -0.02 1.00 16 11 C -0.10 -0.79 4.26 -87.41 -0.37 -1.16 16 12 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 13 C -0.12 -0.83 6.24 -25.44 -0.16 -0.99 16 14 C 0.10 1.05 6.40 -3.40 -0.02 1.03 16 15 N -0.62 -8.78 3.05 -164.33 -0.50 -9.28 16 16 C 0.53 10.14 7.44 -10.98 -0.08 10.06 16 17 O -0.52 -12.07 15.50 5.55 0.09 -11.98 16 18 C -0.12 -2.54 4.68 -27.88 -0.13 -2.67 16 19 C 0.04 1.04 4.26 -27.89 -0.12 0.92 16 20 C -0.53 -15.03 9.11 -34.44 -0.31 -15.34 16 21 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 24 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C 0.13 1.50 3.50 -67.04 -0.23 1.27 16 29 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 30 C 0.09 1.20 5.42 -3.73 -0.02 1.18 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.11 0.95 6.33 -51.93 -0.33 0.62 16 34 H 0.23 2.27 8.06 -52.48 -0.42 1.85 16 35 H 0.08 0.70 7.40 -51.92 -0.38 0.31 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.44 7.70 -51.93 -0.40 0.04 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.81 7.61 -51.93 -0.40 0.41 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.08 1.47 7.86 -51.93 -0.41 1.06 16 43 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.11 1.91 5.50 -51.93 -0.29 1.62 16 47 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -37.24 383.87 -9.62 -46.86 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.81 Total: -0.74 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -3.40 Total: 8.70 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -0.34 Total: -57.94 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.17 Total: -19.39 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.24 -9.62 -46.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270902069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.692 kcal (2) G-P(sol) polarization free energy of solvation -37.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds