Wall clock time and date at job start Wed Apr 1 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28869 * 125.95560 * 2 1 4 4 C 1.30929 * 109.00235 * 180.28522 * 3 2 1 5 5 N 1.32954 * 108.47543 * 359.73127 * 4 3 2 6 6 C 1.32147 * 107.31646 * 359.97438 * 5 4 3 7 7 C 1.47774 * 126.44277 * 180.02562 * 6 5 4 8 8 O 1.21558 * 120.00119 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99820 * 0.02562 * 7 6 5 10 10 C 1.46503 * 125.27701 * 179.97438 * 9 7 6 11 11 C 1.55798 * 108.42156 * 182.19282 * 10 9 7 12 12 H 1.09000 * 113.30302 * 250.11303 * 11 10 9 13 13 C 1.54600 * 108.43693 * 123.12444 * 11 10 9 14 14 C 1.53861 * 103.82396 * 277.18379 * 13 11 10 15 15 N 1.46852 * 106.61421 * 331.90696 * 14 13 11 16 16 C 1.34777 * 125.32554 * 198.18507 * 15 14 13 17 17 O 1.21283 * 119.99750 * 179.69498 * 16 15 14 18 18 C 1.50702 * 119.99928 * 359.97438 * 16 15 14 19 19 C 1.52996 * 109.47159 * 179.72352 * 18 16 15 20 20 C 1.50697 * 109.47491 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99437 * 359.97438 * 20 19 18 22 22 C 1.37869 * 120.00278 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00194 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00110 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47099 * 59.99852 * 24 22 20 26 26 H 1.48497 * 109.47322 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47165 * 300.00026 * 24 22 20 28 28 C 1.46124 * 109.34955 * 17.92641 * 15 14 13 29 29 H 1.09000 * 110.72114 * 238.26350 * 28 15 14 30 30 C 1.46673 * 125.28464 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.47119 * 270.17091 * 1 2 3 32 32 H 1.08997 * 109.47144 * 30.17675 * 1 2 3 33 33 H 1.09002 * 109.47270 * 150.17569 * 1 2 3 34 34 H 1.08004 * 125.75811 * 179.74633 * 4 3 2 35 35 H 1.09008 * 109.71693 * 302.02823 * 10 9 7 36 36 H 1.08997 * 109.72549 * 62.63691 * 10 9 7 37 37 H 1.09003 * 110.56608 * 35.94224 * 13 11 10 38 38 H 1.08992 * 110.57458 * 158.80819 * 13 11 10 39 39 H 1.09003 * 110.09863 * 212.56229 * 14 13 11 40 40 H 1.09003 * 109.90918 * 91.15139 * 14 13 11 41 41 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 42 42 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 43 43 H 1.09004 * 109.47066 * 299.99797 * 19 18 16 44 44 H 1.09000 * 109.47234 * 59.99288 * 19 18 16 45 45 H 0.97004 * 120.00291 * 180.02562 * 23 22 20 46 46 H 1.09003 * 109.91342 * 43.67167 * 30 9 7 47 47 H 1.08995 * 110.09046 * 282.46981 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2216 1.0432 0.0000 4 6 3.4740 0.6614 -0.0062 5 7 3.5093 -0.6677 -0.0043 6 6 2.2587 -1.0944 0.0037 7 6 1.8118 -2.5029 0.0091 8 8 0.6246 -2.7639 0.0159 9 7 2.7205 -3.4982 0.0064 10 6 2.4078 -4.9295 0.0116 11 6 3.7461 -5.7256 0.0626 12 1 3.9723 -6.2486 -0.8665 13 6 3.7174 -6.6513 1.3005 14 6 4.1490 -5.7325 2.4568 15 7 5.0095 -4.6966 1.8711 16 6 5.8644 -3.9135 2.5584 17 8 6.5353 -3.0893 1.9738 18 6 5.9913 -4.0662 4.0522 19 6 7.0257 -3.0704 4.5807 20 6 7.1522 -3.2227 6.0746 21 1 6.5542 -3.9561 6.5951 22 6 8.0312 -2.4258 6.7768 23 7 8.7597 -1.5330 6.1429 24 14 8.1874 -2.6140 8.6288 25 1 8.6214 -3.9972 8.9509 26 1 9.1915 -1.6476 9.1417 27 1 6.8731 -2.3466 9.2661 28 6 4.7984 -4.6519 0.4259 29 1 5.7329 -4.8305 -0.1061 30 6 4.1760 -3.3166 -0.0022 31 1 -0.3633 0.0031 1.0276 32 1 -0.3633 0.8884 -0.5166 33 1 -0.3634 -0.8916 -0.5111 34 1 4.3333 1.3157 -0.0116 35 1 1.8026 -5.1705 0.8856 36 1 1.8635 -5.1904 -0.8959 37 1 2.7111 -7.0351 1.4684 38 1 4.4262 -7.4709 1.1824 39 1 4.7046 -6.3029 3.2011 40 1 3.2719 -5.2748 2.9144 41 1 5.0266 -3.8709 4.5207 42 1 6.3108 -5.0813 4.2878 43 1 7.9904 -3.2657 4.1123 44 1 6.7063 -2.0553 4.3450 45 1 9.3785 -0.9726 6.6369 46 1 4.4565 -2.5333 0.7020 47 1 4.5145 -3.0533 -1.0042 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270902069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:22 Heat of formation + Delta-G solvation = 13.230355 kcal Electronic energy + Delta-G solvation = -31344.813547 eV Core-core repulsion = 27143.000135 eV Total energy + Delta-G solvation = -4201.813412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.60616 -42.03450 -40.49318 -39.14341 -36.60619 -35.59129 -35.48506 -33.56840 -33.02119 -32.65271 -31.12352 -29.08147 -28.51311 -27.58471 -26.15629 -24.52025 -24.24609 -23.25905 -22.83604 -21.19072 -21.04638 -19.95165 -18.93804 -18.50445 -18.16711 -18.03822 -17.77580 -17.16667 -16.94554 -16.51452 -16.41491 -16.12871 -15.62775 -15.61074 -14.85637 -14.64048 -14.50215 -14.43178 -14.24728 -14.18628 -13.90361 -13.79984 -13.71390 -13.22136 -13.18312 -13.16987 -12.79666 -12.76429 -12.53131 -12.17845 -12.08699 -11.94891 -11.69784 -11.63487 -11.58200 -11.48600 -11.39242 -11.32749 -10.73395 -10.68101 -10.56627 -9.89626 -9.60403 -8.18281 -6.32805 -0.14424 0.95513 1.26521 1.40807 1.45468 1.53221 1.68923 1.81137 1.91748 2.03756 2.42632 2.72703 3.14305 3.15417 3.31502 3.40316 3.62224 3.67053 3.98500 4.03878 4.18138 4.19495 4.22779 4.26662 4.36924 4.45389 4.50796 4.52154 4.52996 4.68932 4.77752 4.81224 4.85857 5.00587 5.03304 5.10536 5.13121 5.16058 5.23800 5.25948 5.28619 5.46357 5.56628 5.61472 5.83908 6.01037 6.16558 6.49054 6.58107 6.85139 6.94086 7.27188 7.37484 8.94091 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009918 B = 0.003232 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.441617 B = 8661.792840 C =10448.396382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.261 5.261 3 N -0.309 5.309 4 C 0.154 3.846 5 N -0.488 5.488 6 C 0.142 3.858 7 C 0.619 3.381 8 O -0.544 6.544 9 N -0.581 5.581 10 C 0.107 3.893 11 C -0.083 4.083 12 H 0.152 0.848 13 C -0.110 4.110 14 C 0.087 3.913 15 N -0.612 5.612 16 C 0.524 3.476 17 O -0.576 6.576 18 C -0.112 4.112 19 C 0.047 3.953 20 C -0.545 4.545 21 H 0.074 0.926 22 C -0.005 4.005 23 N -0.936 5.936 24 Si 0.973 3.027 25 H -0.260 1.260 26 H -0.287 1.287 27 H -0.265 1.265 28 C 0.119 3.881 29 H 0.097 0.903 30 C 0.099 3.901 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.246 0.754 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.103 0.897 43 H -0.015 1.015 44 H -0.023 1.023 45 H 0.263 0.737 46 H 0.070 0.930 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.357 -10.258 -16.414 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.058 5.058 3 N -0.147 5.147 4 C -0.145 4.145 5 N -0.215 5.215 6 C -0.133 4.133 7 C 0.404 3.596 8 O -0.422 6.422 9 N -0.312 5.312 10 C -0.014 4.014 11 C -0.102 4.102 12 H 0.170 0.830 13 C -0.147 4.147 14 C -0.035 4.035 15 N -0.346 5.346 16 C 0.314 3.686 17 O -0.455 6.455 18 C -0.151 4.151 19 C 0.009 3.991 20 C -0.583 4.583 21 H 0.092 0.908 22 C -0.203 4.203 23 N -0.576 5.576 24 Si 0.796 3.204 25 H -0.184 1.184 26 H -0.212 1.212 27 H -0.189 1.189 28 C 0.014 3.986 29 H 0.115 0.885 30 C -0.025 4.025 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.262 0.738 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.003 0.997 44 H -0.004 1.004 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.479 -9.331 -16.647 27.269 hybrid contribution 0.657 0.962 0.969 1.516 sum -18.822 -8.369 -15.678 25.886 Atomic orbital electron populations 1.22770 0.69527 1.07591 1.06465 1.47410 1.10527 1.02040 1.45785 1.74199 1.04488 1.13825 1.22193 1.26571 0.94968 0.90617 1.02360 1.71412 1.18886 1.12223 1.19008 1.24219 0.87186 0.92794 1.09067 1.15897 0.84704 0.81179 0.77858 1.90771 1.15282 1.83350 1.52770 1.47779 1.07016 1.06977 1.69426 1.22659 0.97976 0.76615 1.04147 1.23383 0.90403 0.94278 1.02105 0.83010 1.22595 1.04994 0.96792 0.90349 1.22339 0.93874 0.88946 0.98365 1.48252 1.41128 1.37516 1.07701 1.20969 0.77781 0.79320 0.90506 1.90675 1.46075 1.36952 1.71764 1.21573 1.01654 1.02524 0.89366 1.18640 0.92804 0.92793 0.94830 1.21659 1.23177 1.20219 0.93261 0.90789 1.26123 0.95119 0.94635 1.04395 1.70173 1.26007 1.23195 1.38193 0.85391 0.78185 0.78477 0.78303 1.18448 1.21226 1.18929 1.22084 0.99789 0.94618 0.82092 0.88525 1.22365 0.78287 0.99103 1.02730 0.88069 0.86000 0.86523 0.73836 0.89943 0.88616 0.86481 0.88045 0.89307 0.91880 0.89159 0.87843 0.99679 1.00439 0.92833 0.91125 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.85 127.77 1.39 2.60 16 2 N -0.26 -6.67 3.74 -361.54 -1.35 -8.02 16 3 N -0.31 -8.43 12.08 -61.29 -0.74 -9.17 16 4 C 0.15 4.34 13.03 180.79 2.36 6.69 16 5 N -0.49 -15.56 8.63 -193.33 -1.67 -17.22 16 6 C 0.14 4.14 7.66 136.70 1.05 5.18 16 7 C 0.62 16.57 7.84 86.77 0.68 17.25 16 8 O -0.54 -14.59 14.99 -3.90 -0.06 -14.65 16 9 N -0.58 -13.49 3.31 -818.45 -2.71 -16.19 16 10 C 0.11 1.55 6.28 87.35 0.55 2.10 16 11 C -0.08 -0.91 4.26 -8.71 -0.04 -0.95 16 12 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 13 C -0.11 -0.96 6.24 31.43 0.20 -0.76 16 14 C 0.09 1.55 6.40 86.60 0.55 2.10 16 15 N -0.61 -16.86 3.05 -792.20 -2.42 -19.28 16 16 C 0.52 20.91 7.44 87.66 0.65 21.56 16 17 O -0.58 -28.58 15.50 -3.04 -0.05 -28.62 16 18 C -0.11 -4.66 4.68 29.85 0.14 -4.52 16 19 C 0.05 2.68 4.26 29.85 0.13 2.81 16 20 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 21 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 22 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 23 N -0.94 -60.08 13.29 21.44 0.28 -59.80 16 24 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 27 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 28 C 0.12 2.62 3.50 45.77 0.16 2.78 16 29 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 30 C 0.10 2.62 5.42 86.49 0.47 3.09 16 31 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.12 1.85 6.33 -2.39 -0.02 1.83 16 34 H 0.25 5.33 8.06 -2.91 -0.02 5.30 16 35 H 0.08 1.16 7.40 -2.38 -0.02 1.15 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.12 0.47 7.70 -2.39 -0.02 0.45 16 38 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.09 1.49 7.61 -2.39 -0.02 1.47 16 40 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 3.49 8.14 -2.38 -0.02 3.47 16 42 H 0.10 3.77 7.86 -2.39 -0.02 3.75 16 43 H -0.02 -0.97 8.10 -2.38 -0.02 -0.99 16 44 H -0.02 -1.49 8.10 -2.39 -0.02 -1.51 16 45 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 46 H 0.07 2.56 5.50 -2.39 -0.01 2.54 16 47 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -87.58 383.87 3.29 -84.29 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.99 Total: 13.17 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: 8.98 Total: 28.73 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -8.60 Total: -129.68 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -0.11 Total: -43.27 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -87.58 3.29 -84.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270902069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.519 kcal (2) G-P(sol) polarization free energy of solvation -87.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds