Wall clock time and date at job start Wed Apr 1 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28862 * 125.95375 * 2 1 4 4 C 1.30929 * 109.00336 * 179.97438 * 3 2 1 5 5 N 1.32957 * 108.47456 * 359.76037 * 4 3 2 6 6 C 1.32149 * 107.31327 * 0.39015 * 5 4 3 7 7 C 1.47779 * 126.44289 * 179.88506 * 6 5 4 8 8 O 1.21550 * 119.99766 * 173.42288 * 7 6 5 9 9 N 1.34771 * 119.99856 * 353.41385 * 7 6 5 10 10 C 1.47164 * 120.71140 * 173.58839 * 9 7 6 11 11 C 1.53882 * 108.03420 * 132.74998 * 10 9 7 12 12 H 1.08998 * 112.58126 * 182.22705 * 11 10 9 13 13 C 1.54131 * 107.70893 * 306.32540 * 11 10 9 14 14 C 1.54286 * 104.89026 * 89.41157 * 13 11 10 15 15 C 1.54540 * 104.84781 * 359.80759 * 14 13 11 16 16 H 1.08997 * 112.18296 * 146.41278 * 15 14 13 17 17 C 1.49247 * 120.77227 * 353.66267 * 9 7 6 18 18 N 1.48305 * 107.20985 * 58.36188 * 11 10 9 19 19 C 1.34778 * 128.07708 * 106.70387 * 18 11 10 20 20 O 1.21284 * 119.99946 * 179.68619 * 19 18 11 21 21 C 1.50701 * 119.99894 * 359.67806 * 19 18 11 22 22 C 1.52998 * 109.47183 * 179.97438 * 21 19 18 23 23 C 1.50693 * 109.47459 * 180.02562 * 22 21 19 24 24 H 1.08007 * 119.99569 * 359.72575 * 23 22 21 25 25 C 1.37872 * 120.00242 * 180.02562 * 23 22 21 26 26 N 1.31505 * 120.00008 * 359.72105 * 25 23 22 27 27 Si 1.86802 * 119.99804 * 179.72388 * 25 23 22 28 28 H 1.48498 * 109.47543 * 359.97438 * 27 25 23 29 29 H 1.48504 * 109.47096 * 119.99982 * 27 25 23 30 30 H 1.48501 * 109.47062 * 239.99474 * 27 25 23 31 31 H 1.09001 * 109.47056 * 270.02608 * 1 2 3 32 32 H 1.09010 * 109.46789 * 30.01705 * 1 2 3 33 33 H 1.08993 * 109.47508 * 150.01625 * 1 2 3 34 34 H 1.08003 * 125.76401 * 179.97438 * 4 3 2 35 35 H 1.09004 * 109.74606 * 13.11576 * 10 9 7 36 36 H 1.08999 * 109.75134 * 252.38723 * 10 9 7 37 37 H 1.08999 * 110.50799 * 330.47053 * 13 11 10 38 38 H 1.09000 * 110.27747 * 208.23097 * 13 11 10 39 39 H 1.09000 * 110.36273 * 240.96064 * 14 13 11 40 40 H 1.09001 * 110.45392 * 118.69658 * 14 13 11 41 41 H 1.09005 * 110.51620 * 107.82208 * 17 9 7 42 42 H 1.09005 * 109.74560 * 346.60413 * 17 9 7 43 43 H 1.08998 * 109.46730 * 60.00203 * 21 19 18 44 44 H 1.08996 * 109.47006 * 300.00665 * 21 19 18 45 45 H 1.09001 * 109.46653 * 59.99851 * 22 21 19 46 46 H 1.09000 * 109.47219 * 300.00817 * 22 21 19 47 47 H 0.97003 * 120.00039 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2216 1.0431 0.0000 4 6 3.4740 0.6614 0.0006 5 7 3.5094 -0.6677 0.0062 6 6 2.2587 -1.0944 0.0005 7 6 1.8117 -2.5030 0.0012 8 8 0.6305 -2.7657 0.1161 9 7 2.7138 -3.4962 -0.1257 10 6 2.3066 -4.9036 0.0130 11 6 2.9119 -5.6926 -1.1613 12 1 2.6231 -6.7436 -1.1525 13 6 2.4928 -4.9869 -2.4659 14 6 3.6035 -3.9490 -2.7297 15 6 4.5922 -4.1197 -1.5543 16 1 5.6237 -3.9348 -1.8542 17 6 4.1478 -3.1939 -0.4083 18 7 4.3829 -5.5151 -1.0974 19 6 5.3129 -6.4138 -0.7181 20 8 6.4875 -6.1116 -0.7269 21 6 4.8933 -7.7943 -0.2829 22 6 6.1325 -8.6095 0.0920 23 6 5.7131 -9.9901 0.5266 24 1 4.6668 -10.2577 0.5389 25 6 6.6644 -10.9095 0.9145 26 7 7.9383 -10.5835 0.9000 27 14 6.1438 -12.6184 1.4606 28 1 4.6650 -12.7324 1.3874 29 1 6.7636 -13.6328 0.5706 30 1 6.5889 -12.8484 2.8585 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8899 -0.5142 33 1 -0.3634 -0.8900 -0.5135 34 1 4.3333 1.3157 0.0003 35 1 1.2194 -4.9769 -0.0154 36 1 2.6788 -5.3035 0.9562 37 1 1.5312 -4.4895 -2.3391 38 1 2.4425 -5.7049 -3.2844 39 1 3.1880 -2.9413 -2.7326 40 1 4.1011 -4.1561 -3.6771 41 1 4.7589 -3.3812 0.4746 42 1 4.2512 -2.1529 -0.7146 43 1 4.3672 -8.2884 -1.0996 44 1 4.2331 -7.7178 0.5810 45 1 6.6591 -8.1154 0.9086 46 1 6.7924 -8.6858 -0.7722 47 1 8.6077 -11.2303 1.1733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270904138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:15 Heat of formation + Delta-G solvation = 52.130877 kcal Electronic energy + Delta-G solvation = -31338.380655 eV Core-core repulsion = 27138.254096 eV Total energy + Delta-G solvation = -4200.126559 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.88897 -41.19342 -39.25889 -37.79111 -35.32328 -34.16249 -33.51138 -32.56114 -31.87029 -31.34882 -30.60428 -28.34080 -27.24168 -25.70407 -25.12763 -24.06995 -22.78472 -22.43325 -21.14877 -20.75600 -20.11035 -18.53550 -17.61739 -17.40186 -17.31290 -16.67965 -16.37204 -16.04092 -15.71575 -15.15562 -15.02669 -14.74421 -14.46110 -14.40553 -14.09302 -13.86511 -13.68077 -13.52454 -13.31255 -12.90630 -12.84207 -12.75656 -12.41653 -12.20232 -12.07158 -11.73626 -11.41848 -11.17804 -11.07133 -10.95649 -10.80821 -10.65972 -10.63525 -10.58558 -10.36722 -9.98486 -9.97712 -9.67424 -9.30867 -9.19387 -9.02428 -8.40423 -8.31803 -5.97116 -4.01539 0.67797 1.66532 2.05348 2.52429 2.73704 3.11206 3.16893 3.31973 3.39340 3.42353 3.52662 3.99673 4.21537 4.36817 4.44621 4.48867 4.62352 4.64548 4.70484 4.75842 4.96765 5.01743 5.11520 5.17206 5.32277 5.38071 5.42466 5.47137 5.55355 5.60362 5.67329 5.70223 5.84057 5.84968 5.89462 5.98571 6.05624 6.14949 6.19113 6.20405 6.44798 6.82067 6.89165 7.44969 7.71737 7.73389 7.84044 7.84301 8.05740 8.36762 8.69489 9.06934 9.62182 11.13853 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021381 B = 0.002357 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.271665 B =11874.621455 C =12151.811429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.261 5.261 3 N -0.304 5.304 4 C 0.162 3.838 5 N -0.471 5.471 6 C 0.168 3.832 7 C 0.606 3.394 8 O -0.537 6.537 9 N -0.577 5.577 10 C 0.103 3.897 11 C 0.119 3.881 12 H 0.118 0.882 13 C -0.127 4.127 14 C -0.124 4.124 15 C 0.117 3.883 16 H 0.112 0.888 17 C 0.081 3.919 18 N -0.629 5.629 19 C 0.533 3.467 20 O -0.529 6.529 21 C -0.124 4.124 22 C 0.037 3.963 23 C -0.526 4.526 24 H 0.056 0.944 25 C 0.058 3.942 26 N -0.889 5.889 27 Si 0.892 3.108 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.284 1.284 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.225 0.775 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.138 0.862 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.023 0.977 46 H 0.024 0.976 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.879 22.870 -5.664 28.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.056 5.056 3 N -0.142 5.142 4 C -0.136 4.136 5 N -0.199 5.199 6 C -0.108 4.108 7 C 0.390 3.610 8 O -0.413 6.413 9 N -0.309 5.309 10 C -0.020 4.020 11 C 0.014 3.986 12 H 0.135 0.865 13 C -0.165 4.165 14 C -0.162 4.162 15 C 0.012 3.988 16 H 0.130 0.870 17 C -0.041 4.041 18 N -0.366 5.366 19 C 0.325 3.675 20 O -0.403 6.403 21 C -0.164 4.164 22 C -0.001 4.001 23 C -0.564 4.564 24 H 0.074 0.926 25 C -0.144 4.144 26 N -0.528 5.528 27 Si 0.720 3.280 28 H -0.197 1.197 29 H -0.210 1.210 30 H -0.210 1.210 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.133 0.867 34 H 0.241 0.759 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.155 0.845 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.042 0.958 46 H 0.042 0.958 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.528 23.132 -5.505 28.958 hybrid contribution -0.254 -0.957 0.429 1.079 sum -16.782 22.175 -5.076 28.269 Atomic orbital electron populations 1.22484 0.71407 1.06352 1.05552 1.47063 1.09461 1.02593 1.46506 1.74244 1.04325 1.13594 1.22009 1.26084 0.94237 0.90728 1.02589 1.71173 1.17904 1.11036 1.19741 1.24186 0.86856 0.92225 1.07496 1.16399 0.85253 0.81522 0.77824 1.90800 1.15726 1.83015 1.51760 1.48306 1.09497 1.05597 1.67477 1.22385 1.01634 0.78767 0.99201 1.22515 0.81184 1.00546 0.94358 0.86456 1.22454 0.98752 0.98241 0.97087 1.22464 0.96210 0.99248 0.98290 1.22552 1.00666 0.82402 0.93136 0.86998 1.23558 0.78637 1.02856 0.99022 1.49565 1.06338 1.12763 1.67903 1.21348 0.84524 0.86460 0.75184 1.90689 1.17377 1.79384 1.52852 1.21860 1.03504 0.89905 1.01122 1.18912 0.90508 0.92975 0.97665 1.21234 0.93097 0.97312 1.44780 0.92561 1.25023 0.94936 0.98696 0.95738 1.70004 1.00057 1.34989 1.47723 0.86543 0.78651 0.84499 0.78310 1.19744 1.21019 1.21025 0.88888 0.88319 0.86736 0.75863 0.87692 0.90030 0.90512 0.90655 0.91156 0.90839 0.90150 0.84498 0.90284 0.90325 0.95833 0.95809 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.48 10.79 59.85 0.65 1.12 16 2 N -0.26 -2.41 3.74 -65.62 -0.25 -2.65 16 3 N -0.30 -2.89 12.08 29.28 0.35 -2.53 16 4 C 0.16 1.40 13.03 -91.88 -1.20 0.20 16 5 N -0.47 -4.82 7.91 -12.46 -0.10 -4.92 16 6 C 0.17 1.75 7.52 -155.26 -1.17 0.58 16 7 C 0.61 6.63 7.69 -12.36 -0.10 6.53 16 8 O -0.54 -6.33 14.23 5.32 0.08 -6.26 16 9 N -0.58 -6.16 2.28 -170.94 -0.39 -6.56 16 10 C 0.10 1.05 5.92 -3.22 -0.02 1.03 16 11 C 0.12 1.26 3.96 -65.89 -0.26 1.00 16 12 H 0.12 1.15 7.42 -51.93 -0.39 0.76 16 13 C -0.13 -1.15 6.16 -25.47 -0.16 -1.31 16 14 C -0.12 -1.18 6.19 -25.25 -0.16 -1.34 16 15 C 0.12 1.39 4.07 -65.66 -0.27 1.13 16 16 H 0.11 1.45 7.93 -51.93 -0.41 1.04 16 17 C 0.08 0.91 5.58 -2.06 -0.01 0.89 16 18 N -0.63 -8.85 2.74 -153.29 -0.42 -9.27 16 19 C 0.53 10.12 7.92 -10.98 -0.09 10.04 16 20 O -0.53 -12.30 16.30 5.55 0.09 -12.21 16 21 C -0.12 -2.47 4.63 -27.88 -0.13 -2.59 16 22 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 23 C -0.53 -14.74 9.11 -34.45 -0.31 -15.05 16 24 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 25 C 0.06 1.67 5.46 -17.83 -0.10 1.57 16 26 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 27 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 28 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 29 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 30 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.11 0.69 6.47 -51.93 -0.34 0.35 16 34 H 0.23 1.08 8.06 -52.48 -0.42 0.65 16 35 H 0.10 0.98 7.08 -51.93 -0.37 0.61 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.66 7.83 -51.93 -0.41 0.25 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.63 7.86 -51.93 -0.41 0.22 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.14 1.43 4.58 -52.00 -0.24 1.20 16 43 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 44 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 46 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -36.02 380.21 -9.36 -45.38 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.73 Total: -1.35 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -3.43 Total: 4.67 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.06 Total: -52.47 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.17 Total: -18.47 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.02 -9.36 -45.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270904138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.509 kcal (2) G-P(sol) polarization free energy of solvation -36.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds