Wall clock time and date at job start Wed Apr 1 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28862 * 125.95375 * 2 1 4 4 C 1.30929 * 109.00336 * 179.97438 * 3 2 1 5 5 N 1.32957 * 108.47456 * 359.76037 * 4 3 2 6 6 C 1.32149 * 107.31327 * 0.39015 * 5 4 3 7 7 C 1.47779 * 126.44289 * 179.88506 * 6 5 4 8 8 O 1.21550 * 119.99766 * 173.42288 * 7 6 5 9 9 N 1.34771 * 119.99856 * 353.41385 * 7 6 5 10 10 C 1.47164 * 120.71140 * 173.58839 * 9 7 6 11 11 C 1.53882 * 108.03420 * 132.74998 * 10 9 7 12 12 H 1.08998 * 112.58126 * 182.22705 * 11 10 9 13 13 C 1.54131 * 107.70893 * 306.32540 * 11 10 9 14 14 C 1.54286 * 104.89026 * 89.41157 * 13 11 10 15 15 C 1.54540 * 104.84781 * 359.80759 * 14 13 11 16 16 H 1.08997 * 112.18296 * 146.41278 * 15 14 13 17 17 C 1.49247 * 120.77227 * 353.66267 * 9 7 6 18 18 N 1.48305 * 107.20985 * 58.36188 * 11 10 9 19 19 C 1.34778 * 128.07708 * 106.70387 * 18 11 10 20 20 O 1.21284 * 119.99946 * 179.68619 * 19 18 11 21 21 C 1.50701 * 119.99894 * 359.67806 * 19 18 11 22 22 C 1.52998 * 109.47183 * 179.97438 * 21 19 18 23 23 C 1.50693 * 109.47459 * 180.02562 * 22 21 19 24 24 H 1.08007 * 119.99569 * 359.72575 * 23 22 21 25 25 C 1.37872 * 120.00242 * 180.02562 * 23 22 21 26 26 N 1.31505 * 120.00008 * 359.72105 * 25 23 22 27 27 Si 1.86802 * 119.99804 * 179.72388 * 25 23 22 28 28 H 1.48498 * 109.47543 * 359.97438 * 27 25 23 29 29 H 1.48504 * 109.47096 * 119.99982 * 27 25 23 30 30 H 1.48501 * 109.47062 * 239.99474 * 27 25 23 31 31 H 1.09001 * 109.47056 * 270.02608 * 1 2 3 32 32 H 1.09010 * 109.46789 * 30.01705 * 1 2 3 33 33 H 1.08993 * 109.47508 * 150.01625 * 1 2 3 34 34 H 1.08003 * 125.76401 * 179.97438 * 4 3 2 35 35 H 1.09004 * 109.74606 * 13.11576 * 10 9 7 36 36 H 1.08999 * 109.75134 * 252.38723 * 10 9 7 37 37 H 1.08999 * 110.50799 * 330.47053 * 13 11 10 38 38 H 1.09000 * 110.27747 * 208.23097 * 13 11 10 39 39 H 1.09000 * 110.36273 * 240.96064 * 14 13 11 40 40 H 1.09001 * 110.45392 * 118.69658 * 14 13 11 41 41 H 1.09005 * 110.51620 * 107.82208 * 17 9 7 42 42 H 1.09005 * 109.74560 * 346.60413 * 17 9 7 43 43 H 1.08998 * 109.46730 * 60.00203 * 21 19 18 44 44 H 1.08996 * 109.47006 * 300.00665 * 21 19 18 45 45 H 1.09001 * 109.46653 * 59.99851 * 22 21 19 46 46 H 1.09000 * 109.47219 * 300.00817 * 22 21 19 47 47 H 0.97003 * 120.00039 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2216 1.0431 0.0000 4 6 3.4740 0.6614 0.0006 5 7 3.5094 -0.6677 0.0062 6 6 2.2587 -1.0944 0.0005 7 6 1.8117 -2.5030 0.0012 8 8 0.6305 -2.7657 0.1161 9 7 2.7138 -3.4962 -0.1257 10 6 2.3066 -4.9036 0.0130 11 6 2.9119 -5.6926 -1.1613 12 1 2.6231 -6.7436 -1.1525 13 6 2.4928 -4.9869 -2.4659 14 6 3.6035 -3.9490 -2.7297 15 6 4.5922 -4.1197 -1.5543 16 1 5.6237 -3.9348 -1.8542 17 6 4.1478 -3.1939 -0.4083 18 7 4.3829 -5.5151 -1.0974 19 6 5.3129 -6.4138 -0.7181 20 8 6.4875 -6.1116 -0.7269 21 6 4.8933 -7.7943 -0.2829 22 6 6.1325 -8.6095 0.0920 23 6 5.7131 -9.9901 0.5266 24 1 4.6668 -10.2577 0.5389 25 6 6.6644 -10.9095 0.9145 26 7 7.9383 -10.5835 0.9000 27 14 6.1438 -12.6184 1.4606 28 1 4.6650 -12.7324 1.3874 29 1 6.7636 -13.6328 0.5706 30 1 6.5889 -12.8484 2.8585 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8899 -0.5142 33 1 -0.3634 -0.8900 -0.5135 34 1 4.3333 1.3157 0.0003 35 1 1.2194 -4.9769 -0.0154 36 1 2.6788 -5.3035 0.9562 37 1 1.5312 -4.4895 -2.3391 38 1 2.4425 -5.7049 -3.2844 39 1 3.1880 -2.9413 -2.7326 40 1 4.1011 -4.1561 -3.6771 41 1 4.7589 -3.3812 0.4746 42 1 4.2512 -2.1529 -0.7146 43 1 4.3672 -8.2884 -1.0996 44 1 4.2331 -7.7178 0.5810 45 1 6.6591 -8.1154 0.9086 46 1 6.7924 -8.6858 -0.7722 47 1 8.6077 -11.2303 1.1733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270904138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:13 Heat of formation + Delta-G solvation = 30.252489 kcal Electronic energy + Delta-G solvation = -31339.329373 eV Core-core repulsion = 27138.254096 eV Total energy + Delta-G solvation = -4201.075277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.57992 -42.17751 -40.36058 -39.08693 -36.08422 -35.57669 -34.98850 -33.48657 -33.17932 -32.27387 -32.19365 -29.02544 -28.19652 -27.47634 -25.98775 -24.96848 -24.04995 -23.42440 -22.37195 -21.67855 -21.17880 -19.57011 -19.00937 -18.30534 -18.10108 -18.02197 -17.33474 -17.15597 -16.88822 -16.47070 -16.40550 -16.09790 -15.62115 -15.32216 -15.01807 -14.88333 -14.65210 -14.28680 -14.18544 -14.10215 -14.05648 -13.78240 -13.67690 -13.40285 -13.24395 -13.07221 -12.84358 -12.59170 -12.44213 -12.25719 -11.99707 -11.93283 -11.60406 -11.51059 -11.47004 -11.43640 -11.26974 -11.20084 -10.70022 -10.66048 -10.57067 -10.28228 -9.49198 -8.17121 -6.30899 -0.08264 0.98922 1.34841 1.43110 1.44326 1.57518 1.66917 1.71690 1.95109 2.00192 2.43762 2.73636 3.16230 3.33959 3.42813 3.54725 3.62709 3.76796 3.83839 3.98683 4.14388 4.25224 4.30004 4.30640 4.42390 4.46765 4.52251 4.55085 4.57538 4.62721 4.64651 4.74993 4.80672 4.93046 5.03832 5.10400 5.12443 5.17236 5.21397 5.29550 5.36914 5.47822 5.52357 5.63469 5.86026 5.96668 6.18185 6.53570 6.63164 6.88005 7.00159 7.23701 7.39463 8.95801 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021381 B = 0.002357 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.271665 B =11874.621455 C =12151.811429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.259 5.259 3 N -0.314 5.314 4 C 0.161 3.839 5 N -0.487 5.487 6 C 0.150 3.850 7 C 0.610 3.390 8 O -0.544 6.544 9 N -0.578 5.578 10 C 0.104 3.896 11 C 0.114 3.886 12 H 0.133 0.867 13 C -0.119 4.119 14 C -0.115 4.115 15 C 0.110 3.890 16 H 0.096 0.904 17 C 0.094 3.906 18 N -0.621 5.621 19 C 0.534 3.466 20 O -0.586 6.586 21 C -0.111 4.111 22 C 0.043 3.957 23 C -0.539 4.539 24 H 0.077 0.923 25 C -0.008 4.008 26 N -0.938 5.938 27 Si 0.973 3.027 28 H -0.251 1.251 29 H -0.281 1.281 30 H -0.282 1.282 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.255 0.745 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.148 0.852 43 H 0.104 0.896 44 H 0.101 0.899 45 H -0.020 1.020 46 H -0.018 1.018 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.227 23.127 -6.147 31.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.054 5.054 3 N -0.152 5.152 4 C -0.137 4.137 5 N -0.215 5.215 6 C -0.125 4.125 7 C 0.395 3.605 8 O -0.421 6.421 9 N -0.309 5.309 10 C -0.018 4.018 11 C 0.010 3.990 12 H 0.151 0.849 13 C -0.157 4.157 14 C -0.153 4.153 15 C 0.007 3.993 16 H 0.114 0.886 17 C -0.029 4.029 18 N -0.355 5.355 19 C 0.325 3.675 20 O -0.466 6.466 21 C -0.151 4.151 22 C 0.006 3.994 23 C -0.577 4.577 24 H 0.095 0.905 25 C -0.205 4.205 26 N -0.578 5.578 27 Si 0.797 3.203 28 H -0.175 1.175 29 H -0.207 1.207 30 H -0.208 1.208 31 H 0.120 0.880 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.271 0.729 35 H 0.140 0.860 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.165 0.835 43 H 0.122 0.878 44 H 0.120 0.880 45 H -0.001 1.001 46 H 0.000 1.000 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.973 23.422 -6.005 31.362 hybrid contribution 0.751 -0.894 0.585 1.306 sum -19.222 22.528 -5.420 30.106 Atomic orbital electron populations 1.22735 0.69765 1.07365 1.06474 1.47344 1.10446 1.02116 1.45504 1.74251 1.04746 1.13801 1.22361 1.26745 0.94964 0.90512 1.01500 1.71106 1.18152 1.12012 1.20242 1.24104 0.87342 0.92297 1.08720 1.16410 0.85035 0.81711 0.77363 1.90793 1.15941 1.83256 1.52104 1.48288 1.09095 1.05902 1.67640 1.22408 1.02476 0.78363 0.98556 1.22864 0.78468 1.01973 0.95650 0.84898 1.22439 0.98865 0.98106 0.96282 1.22419 0.95643 1.00226 0.97041 1.22732 1.00850 0.81105 0.94645 0.88629 1.23374 0.78758 1.03077 0.97652 1.49410 1.07490 1.12860 1.65776 1.21043 0.84295 0.86899 0.75242 1.90665 1.19856 1.80390 1.55690 1.21592 1.00582 0.89956 1.02925 1.18683 0.92440 0.93886 0.94411 1.21722 0.94107 0.97740 1.44109 0.90477 1.26132 0.94798 1.03825 0.95753 1.70184 1.01694 1.36845 1.49098 0.85287 0.79312 0.78186 0.77538 1.17457 1.20685 1.20789 0.87965 0.86207 0.86851 0.72927 0.86017 0.90875 0.89133 0.89496 0.89963 0.90403 0.92358 0.83515 0.87784 0.88043 1.00111 0.99977 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 10.79 127.77 1.38 2.10 16 2 N -0.26 -4.31 3.74 -361.51 -1.35 -5.66 16 3 N -0.31 -5.39 12.08 -61.29 -0.74 -6.14 16 4 C 0.16 2.51 13.03 180.79 2.36 4.86 16 5 N -0.49 -9.40 7.91 -193.32 -1.53 -10.93 16 6 C 0.15 2.92 7.52 136.71 1.03 3.95 16 7 C 0.61 12.31 7.69 86.77 0.67 12.97 16 8 O -0.54 -11.66 14.23 -3.87 -0.06 -11.72 16 9 N -0.58 -11.52 2.28 -813.02 -1.86 -13.38 16 10 C 0.10 1.93 5.92 86.55 0.51 2.44 16 11 C 0.11 2.16 3.96 45.32 0.18 2.34 16 12 H 0.13 2.16 7.42 -2.39 -0.02 2.14 16 13 C -0.12 -1.79 6.16 31.41 0.19 -1.60 16 14 C -0.11 -1.97 6.19 31.55 0.20 -1.77 16 15 C 0.11 2.61 4.07 45.46 0.19 2.79 16 16 H 0.10 2.59 7.93 -2.39 -0.02 2.58 16 17 C 0.09 2.06 5.58 86.15 0.48 2.54 16 18 N -0.62 -17.20 2.74 -757.27 -2.07 -19.28 16 19 C 0.53 20.80 7.92 87.66 0.69 21.50 16 20 O -0.59 -29.06 16.30 -3.04 -0.05 -29.11 16 21 C -0.11 -4.41 4.63 29.85 0.14 -4.27 16 22 C 0.04 2.41 4.26 29.85 0.13 2.54 16 23 C -0.54 -30.41 9.11 25.60 0.23 -30.17 16 24 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 25 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 26 N -0.94 -59.59 13.29 21.44 0.28 -59.30 16 27 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 28 H -0.25 -10.43 7.11 99.48 0.71 -9.73 16 29 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 30 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.11 1.14 6.47 -2.39 -0.02 1.12 16 34 H 0.25 1.92 8.06 -2.91 -0.02 1.89 16 35 H 0.12 1.91 7.08 -2.38 -0.02 1.89 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.20 7.83 -2.39 -0.02 1.18 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.26 7.86 -2.39 -0.02 1.24 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.15 3.00 4.58 -2.54 -0.01 2.98 16 43 H 0.10 3.60 8.03 -2.39 -0.02 3.58 16 44 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 45 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 46 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 47 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -81.80 380.21 4.48 -77.33 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.99 Total: 11.80 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 8.83 Total: 20.23 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -7.27 Total: -114.69 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -0.10 Total: -40.82 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -81.80 4.48 -77.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270904138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.579 kcal (2) G-P(sol) polarization free energy of solvation -81.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds