Wall clock time and date at job start Wed Apr 1 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28868 * 125.95765 * 2 1 4 4 C 1.30931 * 109.00175 * 180.26882 * 3 2 1 5 5 N 1.32958 * 108.47363 * 359.71873 * 4 3 2 6 6 C 1.32145 * 107.32084 * 0.02562 * 5 4 3 7 7 C 1.47765 * 126.44673 * 179.97438 * 6 5 4 8 8 O 1.21556 * 120.00120 * 173.88821 * 7 6 5 9 9 N 1.34773 * 120.00150 * 353.87894 * 7 6 5 10 10 C 1.47029 * 120.28645 * 353.26105 * 9 7 6 11 11 C 1.54151 * 108.01726 * 228.73713 * 10 9 7 12 12 H 1.08999 * 112.98173 * 174.76976 * 11 10 9 13 13 C 1.55441 * 106.36293 * 299.52380 * 11 10 9 14 14 C 1.55193 * 100.59844 * 74.08679 * 13 11 10 15 15 H 1.09001 * 113.03837 * 162.35438 * 14 13 11 16 16 C 1.46989 * 120.29082 * 173.27266 * 9 7 6 17 17 N 1.47727 * 104.34439 * 39.87179 * 14 13 11 18 18 C 1.34775 * 125.79922 * 153.93494 * 17 14 13 19 19 O 1.21277 * 120.00419 * 359.97438 * 18 17 14 20 20 C 1.50699 * 119.99446 * 179.97438 * 18 17 14 21 21 C 1.53002 * 109.47135 * 179.97438 * 20 18 17 22 22 C 1.50700 * 109.47509 * 180.02562 * 21 20 18 23 23 H 1.07992 * 119.99884 * 359.97438 * 22 21 20 24 24 C 1.37872 * 119.99957 * 179.97438 * 22 21 20 25 25 N 1.31517 * 120.00380 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99870 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47124 * 180.02562 * 26 24 22 28 28 H 1.48497 * 109.46986 * 299.99810 * 26 24 22 29 29 H 1.48497 * 109.47308 * 60.00117 * 26 24 22 30 30 C 1.47041 * 108.39318 * 334.19337 * 17 14 13 31 31 H 1.09000 * 109.47107 * 270.20508 * 1 2 3 32 32 H 1.09007 * 109.46591 * 30.19975 * 1 2 3 33 33 H 1.08994 * 109.47395 * 150.20099 * 1 2 3 34 34 H 1.08000 * 125.76090 * 179.69088 * 4 3 2 35 35 H 1.09003 * 109.74861 * 348.36522 * 10 9 7 36 36 H 1.09000 * 109.75684 * 109.05864 * 10 9 7 37 37 H 1.08995 * 111.19056 * 316.25200 * 13 11 10 38 38 H 1.08994 * 111.18764 * 191.92069 * 13 11 10 39 39 H 1.09000 * 109.69968 * 11.91533 * 16 9 7 40 40 H 1.08994 * 109.70621 * 251.30215 * 16 9 7 41 41 H 1.09001 * 109.47447 * 60.00423 * 20 18 17 42 42 H 1.08997 * 109.47376 * 299.99782 * 20 18 17 43 43 H 1.09004 * 109.47017 * 59.99815 * 21 20 18 44 44 H 1.09003 * 109.47324 * 300.00240 * 21 20 18 45 45 H 0.97000 * 120.00010 * 359.97438 * 25 24 22 46 46 H 1.09004 * 109.92613 * 120.21994 * 30 17 14 47 47 H 1.09003 * 109.93198 * 241.55943 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2217 1.0431 0.0000 4 6 3.4741 0.6613 -0.0058 5 7 3.5093 -0.6678 -0.0034 6 6 2.2587 -1.0945 0.0034 7 6 1.8117 -2.5030 0.0077 8 8 0.6307 -2.7655 0.1260 9 7 2.7134 -3.4965 -0.1197 10 6 4.1210 -3.1876 -0.4109 11 6 4.5742 -4.0850 -1.5794 12 1 5.5834 -3.8585 -1.9233 13 6 4.4081 -5.5525 -1.0945 14 6 2.8645 -5.7005 -1.1562 15 1 2.5350 -6.7395 -1.1500 16 6 2.2980 -4.8984 0.0310 17 7 2.4783 -4.9936 -2.3946 18 6 1.3788 -5.2414 -3.1336 19 8 0.6049 -6.1121 -2.7962 20 6 1.1111 -4.4365 -4.3792 21 6 -0.1901 -4.9155 -5.0261 22 6 -0.4575 -4.1110 -6.2720 23 1 0.2314 -3.3354 -6.5722 24 6 -1.5817 -4.3653 -7.0287 25 7 -2.4204 -5.3102 -6.6634 26 14 -1.9128 -3.3686 -8.5735 27 1 -3.1758 -3.8334 -9.2013 28 1 -2.0366 -1.9320 -8.2186 29 1 -0.7897 -3.5476 -9.5283 30 6 3.5006 -3.9780 -2.6872 31 1 -0.3633 0.0037 1.0277 32 1 -0.3633 0.8883 -0.5170 33 1 -0.3634 -0.8917 -0.5107 34 1 4.3333 1.3155 -0.0120 35 1 4.2172 -2.1390 -0.6929 36 1 4.7323 -3.3900 0.4685 37 1 4.7751 -5.6746 -0.0755 38 1 4.8982 -6.2497 -1.7739 39 1 1.2098 -4.9613 0.0311 40 1 2.6899 -5.2994 0.9657 41 1 1.9349 -4.5678 -5.0807 42 1 1.0207 -3.3821 -4.1180 43 1 -1.0142 -4.7846 -4.3248 44 1 -0.0993 -5.9698 -5.2873 45 1 -2.2479 -5.8285 -5.8619 46 1 3.9489 -4.1722 -3.6616 47 1 3.0523 -2.9846 -2.6726 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270904147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:19 Heat of formation + Delta-G solvation = 47.333584 kcal Electronic energy + Delta-G solvation = -32047.415251 eV Core-core repulsion = 27847.080666 eV Total energy + Delta-G solvation = -4200.334585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.80529 -41.27573 -39.20870 -37.96471 -35.30788 -34.27708 -33.79458 -32.51421 -32.04480 -31.36661 -30.24669 -28.05431 -26.25624 -26.09169 -25.24807 -23.74609 -23.00837 -22.44369 -21.37792 -20.84638 -19.71558 -18.74131 -17.74023 -17.27956 -17.21014 -16.93546 -16.33239 -16.07572 -15.81619 -15.14573 -14.90568 -14.90127 -14.35853 -14.08583 -13.91282 -13.69311 -13.62349 -13.49922 -13.30929 -13.07549 -12.90302 -12.67259 -12.51993 -12.32709 -12.00285 -11.98074 -11.45925 -11.37632 -11.29353 -10.89249 -10.81902 -10.70768 -10.51546 -10.13120 -10.10367 -10.01214 -9.91035 -9.87688 -9.26999 -9.07402 -8.52154 -8.42478 -8.27023 -6.30611 -4.00538 0.78637 1.77928 2.14280 2.63356 2.84767 3.11898 3.18470 3.45242 3.47782 3.60111 3.66700 4.13651 4.16620 4.25741 4.36166 4.47635 4.58401 4.69169 4.84139 4.92835 4.95244 5.07522 5.20454 5.23102 5.29763 5.37194 5.44698 5.47083 5.51144 5.61037 5.65749 5.68340 5.73487 5.79826 5.90925 5.98375 6.07704 6.10392 6.12727 6.30398 6.47256 6.74985 6.92180 7.53054 7.57121 7.58776 7.77444 7.81207 8.20910 8.50680 8.64898 8.93456 9.73068 11.10352 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009831 B = 0.003626 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.414182 B = 7720.721019 C = 9330.696013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.257 5.257 3 N -0.302 5.302 4 C 0.159 3.841 5 N -0.475 5.475 6 C 0.169 3.831 7 C 0.603 3.397 8 O -0.522 6.522 9 N -0.577 5.577 10 C 0.084 3.916 11 C -0.116 4.116 12 H 0.116 0.884 13 C -0.129 4.129 14 C 0.119 3.881 15 H 0.111 0.889 16 C 0.102 3.898 17 N -0.621 5.621 18 C 0.529 3.471 19 O -0.533 6.533 20 C -0.115 4.115 21 C 0.026 3.974 22 C -0.608 4.608 23 H 0.048 0.952 24 C 0.016 3.984 25 N -0.910 5.910 26 Si 1.069 2.931 27 H -0.282 1.282 28 H -0.289 1.289 29 H -0.288 1.288 30 C 0.113 3.887 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.225 0.775 35 H 0.139 0.861 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.014 0.986 44 H 0.014 0.986 45 H 0.272 0.728 46 H 0.070 0.930 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.517 8.667 17.659 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.051 5.051 3 N -0.140 5.140 4 C -0.139 4.139 5 N -0.203 5.203 6 C -0.106 4.106 7 C 0.387 3.613 8 O -0.396 6.396 9 N -0.309 5.309 10 C -0.039 4.039 11 C -0.136 4.136 12 H 0.134 0.866 13 C -0.168 4.168 14 C 0.015 3.985 15 H 0.129 0.871 16 C -0.021 4.021 17 N -0.358 5.358 18 C 0.320 3.680 19 O -0.408 6.408 20 C -0.155 4.155 21 C -0.012 4.012 22 C -0.646 4.646 23 H 0.066 0.934 24 C -0.188 4.188 25 N -0.546 5.546 26 Si 0.898 3.102 27 H -0.207 1.207 28 H -0.215 1.215 29 H -0.215 1.215 30 C -0.010 4.010 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.135 0.865 34 H 0.241 0.759 35 H 0.156 0.844 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.032 0.968 44 H 0.033 0.967 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.291 8.656 16.590 24.811 hybrid contribution 1.182 -0.121 1.322 1.778 sum 17.473 8.535 17.912 26.439 Atomic orbital electron populations 1.22559 0.71056 1.06936 1.05516 1.47072 1.09643 1.02525 1.45881 1.74252 1.04243 1.13682 1.21806 1.26047 0.94300 0.90717 1.02878 1.71032 1.17820 1.10974 1.20483 1.24147 0.86885 0.92203 1.07361 1.16478 0.85377 0.81601 0.77892 1.90864 1.15714 1.82844 1.50131 1.47616 1.09346 1.05609 1.68347 1.22964 0.79689 1.03843 0.97365 1.23074 0.99359 0.95788 0.95356 0.86637 1.23065 0.94771 0.96524 1.02392 1.22520 0.94184 0.97323 0.84487 0.87076 1.22353 1.02825 0.79082 0.97886 1.48750 1.24001 1.37281 1.25729 1.21253 0.78349 0.83706 0.84680 1.90661 1.45525 1.33316 1.71338 1.21677 1.02704 0.98821 0.92313 1.19014 0.90286 0.96627 0.95257 1.22007 1.11040 1.21250 1.10307 0.93407 1.25834 0.92864 0.97575 1.02576 1.70731 1.37384 1.20336 1.26153 0.83549 0.76267 0.75233 0.75182 1.20713 1.21531 1.21462 1.21934 0.88668 0.92229 0.98180 0.88813 0.88007 0.86494 0.75921 0.84439 0.90736 0.89546 0.90188 0.88215 0.90190 0.90281 0.90647 0.96765 0.96734 0.91723 0.91200 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.79 59.85 0.65 1.40 16 2 N -0.26 -3.01 3.74 -65.62 -0.25 -3.25 16 3 N -0.30 -3.38 12.08 29.28 0.35 -3.03 16 4 C 0.16 1.48 13.03 -91.88 -1.20 0.28 16 5 N -0.47 -4.99 7.87 -12.46 -0.10 -5.09 16 6 C 0.17 2.07 7.51 -155.26 -1.17 0.91 16 7 C 0.60 8.21 7.66 -12.37 -0.09 8.11 16 8 O -0.52 -8.55 14.18 5.32 0.08 -8.47 16 9 N -0.58 -6.60 2.22 -172.64 -0.38 -6.98 16 10 C 0.08 0.71 5.26 -3.15 -0.02 0.69 16 11 C -0.12 -0.91 4.32 -87.86 -0.38 -1.29 16 12 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 13 C -0.13 -1.01 6.16 -24.27 -0.15 -1.16 16 14 C 0.12 1.41 3.98 -65.54 -0.26 1.15 16 15 H 0.11 1.40 8.01 -51.93 -0.42 0.98 16 16 C 0.10 1.18 6.04 -3.22 -0.02 1.16 16 17 N -0.62 -9.34 2.77 -161.81 -0.45 -9.79 16 18 C 0.53 10.80 7.85 -10.99 -0.09 10.71 16 19 O -0.53 -12.90 16.23 5.56 0.09 -12.81 16 20 C -0.12 -2.52 4.84 -27.88 -0.13 -2.65 16 21 C 0.03 0.71 3.57 -27.88 -0.10 0.61 16 22 C -0.61 -17.89 9.11 -34.44 -0.31 -18.21 16 23 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 24 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 25 N -0.91 -29.22 13.65 55.43 0.76 -28.46 16 26 Si 1.07 25.85 29.90 -169.99 -5.08 20.77 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 30 C 0.11 1.32 5.49 -2.88 -0.02 1.31 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.12 1.32 6.47 -51.93 -0.34 0.98 16 34 H 0.22 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.14 1.27 4.37 -54.81 -0.24 1.03 16 36 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 37 H 0.09 0.51 7.90 -51.93 -0.41 0.10 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 1.50 7.02 -51.93 -0.36 1.13 16 40 H 0.08 0.70 8.12 -51.93 -0.42 0.27 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.01 0.43 7.97 -51.93 -0.41 0.01 16 44 H 0.01 0.43 7.96 -51.93 -0.41 0.02 16 45 H 0.27 8.89 7.22 -40.82 -0.29 8.60 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.80 7.78 -51.93 -0.40 0.39 16 LS Contribution 378.78 15.07 5.71 5.71 Total: -1.00 -38.44 378.78 -9.38 -47.82 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.72 Total: 0.19 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -3.39 Total: 3.40 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.07 Total: -56.60 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.17 Total: -21.28 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.77 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.44 -9.38 -47.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270904147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.150 kcal (2) G-P(sol) polarization free energy of solvation -38.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds