Wall clock time and date at job start Wed Apr 1 2020 05:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28868 * 125.95765 * 2 1 4 4 C 1.30931 * 109.00175 * 180.26882 * 3 2 1 5 5 N 1.32958 * 108.47363 * 359.71873 * 4 3 2 6 6 C 1.32145 * 107.32084 * 0.02562 * 5 4 3 7 7 C 1.47765 * 126.44673 * 179.97438 * 6 5 4 8 8 O 1.21556 * 120.00120 * 173.88821 * 7 6 5 9 9 N 1.34773 * 120.00150 * 353.87894 * 7 6 5 10 10 C 1.47029 * 120.28645 * 353.26105 * 9 7 6 11 11 C 1.54151 * 108.01726 * 228.73713 * 10 9 7 12 12 H 1.08999 * 112.98173 * 174.76976 * 11 10 9 13 13 C 1.55441 * 106.36293 * 299.52380 * 11 10 9 14 14 C 1.55193 * 100.59844 * 74.08679 * 13 11 10 15 15 H 1.09001 * 113.03837 * 162.35438 * 14 13 11 16 16 C 1.46989 * 120.29082 * 173.27266 * 9 7 6 17 17 N 1.47727 * 104.34439 * 39.87179 * 14 13 11 18 18 C 1.34775 * 125.79922 * 153.93494 * 17 14 13 19 19 O 1.21277 * 120.00419 * 359.97438 * 18 17 14 20 20 C 1.50699 * 119.99446 * 179.97438 * 18 17 14 21 21 C 1.53002 * 109.47135 * 179.97438 * 20 18 17 22 22 C 1.50700 * 109.47509 * 180.02562 * 21 20 18 23 23 H 1.07992 * 119.99884 * 359.97438 * 22 21 20 24 24 C 1.37872 * 119.99957 * 179.97438 * 22 21 20 25 25 N 1.31517 * 120.00380 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99870 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47124 * 180.02562 * 26 24 22 28 28 H 1.48497 * 109.46986 * 299.99810 * 26 24 22 29 29 H 1.48497 * 109.47308 * 60.00117 * 26 24 22 30 30 C 1.47041 * 108.39318 * 334.19337 * 17 14 13 31 31 H 1.09000 * 109.47107 * 270.20508 * 1 2 3 32 32 H 1.09007 * 109.46591 * 30.19975 * 1 2 3 33 33 H 1.08994 * 109.47395 * 150.20099 * 1 2 3 34 34 H 1.08000 * 125.76090 * 179.69088 * 4 3 2 35 35 H 1.09003 * 109.74861 * 348.36522 * 10 9 7 36 36 H 1.09000 * 109.75684 * 109.05864 * 10 9 7 37 37 H 1.08995 * 111.19056 * 316.25200 * 13 11 10 38 38 H 1.08994 * 111.18764 * 191.92069 * 13 11 10 39 39 H 1.09000 * 109.69968 * 11.91533 * 16 9 7 40 40 H 1.08994 * 109.70621 * 251.30215 * 16 9 7 41 41 H 1.09001 * 109.47447 * 60.00423 * 20 18 17 42 42 H 1.08997 * 109.47376 * 299.99782 * 20 18 17 43 43 H 1.09004 * 109.47017 * 59.99815 * 21 20 18 44 44 H 1.09003 * 109.47324 * 300.00240 * 21 20 18 45 45 H 0.97000 * 120.00010 * 359.97438 * 25 24 22 46 46 H 1.09004 * 109.92613 * 120.21994 * 30 17 14 47 47 H 1.09003 * 109.93198 * 241.55943 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2217 1.0431 0.0000 4 6 3.4741 0.6613 -0.0058 5 7 3.5093 -0.6678 -0.0034 6 6 2.2587 -1.0945 0.0034 7 6 1.8117 -2.5030 0.0077 8 8 0.6307 -2.7655 0.1260 9 7 2.7134 -3.4965 -0.1197 10 6 4.1210 -3.1876 -0.4109 11 6 4.5742 -4.0850 -1.5794 12 1 5.5834 -3.8585 -1.9233 13 6 4.4081 -5.5525 -1.0945 14 6 2.8645 -5.7005 -1.1562 15 1 2.5350 -6.7395 -1.1500 16 6 2.2980 -4.8984 0.0310 17 7 2.4783 -4.9936 -2.3946 18 6 1.3788 -5.2414 -3.1336 19 8 0.6049 -6.1121 -2.7962 20 6 1.1111 -4.4365 -4.3792 21 6 -0.1901 -4.9155 -5.0261 22 6 -0.4575 -4.1110 -6.2720 23 1 0.2314 -3.3354 -6.5722 24 6 -1.5817 -4.3653 -7.0287 25 7 -2.4204 -5.3102 -6.6634 26 14 -1.9128 -3.3686 -8.5735 27 1 -3.1758 -3.8334 -9.2013 28 1 -2.0366 -1.9320 -8.2186 29 1 -0.7897 -3.5476 -9.5283 30 6 3.5006 -3.9780 -2.6872 31 1 -0.3633 0.0037 1.0277 32 1 -0.3633 0.8883 -0.5170 33 1 -0.3634 -0.8917 -0.5107 34 1 4.3333 1.3155 -0.0120 35 1 4.2172 -2.1390 -0.6929 36 1 4.7323 -3.3900 0.4685 37 1 4.7751 -5.6746 -0.0755 38 1 4.8982 -6.2497 -1.7739 39 1 1.2098 -4.9613 0.0311 40 1 2.6899 -5.2994 0.9657 41 1 1.9349 -4.5678 -5.0807 42 1 1.0207 -3.3821 -4.1180 43 1 -1.0142 -4.7846 -4.3248 44 1 -0.0993 -5.9698 -5.2873 45 1 -2.2479 -5.8285 -5.8619 46 1 3.9489 -4.1722 -3.6616 47 1 3.0523 -2.9846 -2.6726 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270904147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:18 Heat of formation + Delta-G solvation = 22.187172 kcal Electronic energy + Delta-G solvation = -32048.505682 eV Core-core repulsion = 27847.080666 eV Total energy + Delta-G solvation = -4201.425015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.62151 -42.28030 -40.48621 -39.29531 -36.26311 -36.01912 -35.23968 -33.51742 -33.17886 -32.73994 -31.66470 -28.85605 -27.53844 -27.09227 -26.83457 -24.71566 -24.42210 -23.53766 -22.74820 -21.79321 -20.68444 -20.03338 -19.16579 -18.60607 -18.16376 -18.07251 -17.67346 -17.32107 -16.87364 -16.51504 -16.20460 -15.67380 -15.63635 -15.60631 -15.11004 -14.87270 -14.69331 -14.49231 -14.32907 -14.26570 -14.04890 -13.92810 -13.70170 -13.67169 -13.43729 -13.15442 -13.00873 -12.72913 -12.25665 -12.18369 -12.13339 -12.03161 -11.89102 -11.70896 -11.54543 -11.49917 -11.04008 -10.77311 -10.72537 -10.71787 -10.60524 -10.04621 -9.60597 -8.75422 -6.47534 -0.12575 0.94004 1.35257 1.49955 1.51110 1.60499 1.74570 1.79454 1.92486 1.94001 2.55625 2.75580 3.11535 3.34322 3.36929 3.44467 3.61640 3.72535 3.77920 3.84775 4.12133 4.17827 4.19121 4.20483 4.22096 4.27284 4.39285 4.45953 4.52467 4.58517 4.70315 4.76299 4.79651 4.89031 4.96977 5.05495 5.09353 5.14145 5.17064 5.22100 5.24902 5.26442 5.36592 5.59021 5.86036 6.01418 6.09388 6.38069 6.44079 6.64812 6.96734 7.08809 7.38930 8.64277 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009831 B = 0.003626 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2847.414182 B = 7720.721019 C = 9330.696013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.265 5.265 3 N -0.319 5.319 4 C 0.165 3.835 5 N -0.464 5.464 6 C 0.152 3.848 7 C 0.593 3.407 8 O -0.566 6.566 9 N -0.573 5.573 10 C 0.080 3.920 11 C -0.097 4.097 12 H 0.159 0.841 13 C -0.112 4.112 14 C 0.107 3.893 15 H 0.098 0.902 16 C 0.105 3.895 17 N -0.612 5.612 18 C 0.524 3.476 19 O -0.588 6.588 20 C -0.103 4.103 21 C 0.032 3.968 22 C -0.620 4.620 23 H 0.064 0.936 24 C -0.043 4.043 25 N -0.936 5.936 26 Si 1.125 2.875 27 H -0.284 1.284 28 H -0.266 1.266 29 H -0.261 1.261 30 C 0.099 3.901 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.266 0.734 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.121 0.879 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.118 0.882 41 H 0.100 0.900 42 H 0.082 0.918 43 H -0.027 1.027 44 H -0.018 1.018 45 H 0.250 0.750 46 H 0.082 0.918 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.024 10.769 17.774 31.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.060 5.060 3 N -0.156 5.156 4 C -0.133 4.133 5 N -0.193 5.193 6 C -0.123 4.123 7 C 0.377 3.623 8 O -0.443 6.443 9 N -0.304 5.304 10 C -0.040 4.040 11 C -0.116 4.116 12 H 0.176 0.824 13 C -0.149 4.149 14 C 0.003 3.997 15 H 0.116 0.884 16 C -0.018 4.018 17 N -0.346 5.346 18 C 0.314 3.686 19 O -0.468 6.468 20 C -0.143 4.143 21 C -0.006 4.006 22 C -0.658 4.658 23 H 0.082 0.918 24 C -0.240 4.240 25 N -0.573 5.573 26 Si 0.944 3.056 27 H -0.210 1.210 28 H -0.190 1.190 29 H -0.186 1.186 30 C -0.023 4.023 31 H 0.126 0.874 32 H 0.137 0.863 33 H 0.111 0.889 34 H 0.281 0.719 35 H 0.152 0.848 36 H 0.124 0.876 37 H 0.139 0.861 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.136 0.864 41 H 0.119 0.881 42 H 0.100 0.900 43 H -0.009 1.009 44 H 0.000 1.000 45 H 0.060 0.940 46 H 0.101 0.899 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 20.916 10.779 16.747 28.882 hybrid contribution -0.150 -0.755 1.363 1.566 sum 20.766 10.024 18.110 29.321 Atomic orbital electron populations 1.22591 0.70660 1.06524 1.06368 1.47235 1.10180 1.02626 1.45921 1.74264 1.05096 1.13686 1.22571 1.26943 0.94799 0.90712 1.00865 1.71065 1.16593 1.11557 1.20087 1.23991 0.87795 0.91685 1.08818 1.16804 0.85146 0.82646 0.77661 1.90844 1.17583 1.83604 1.52279 1.47791 1.10423 1.04928 1.67228 1.23227 0.77947 1.03906 0.98936 1.23177 0.99715 0.95505 0.93157 0.82353 1.23089 0.90449 0.96571 1.04840 1.22864 0.97826 0.96324 0.82677 0.88438 1.22305 1.00393 0.79619 0.99507 1.48655 1.22633 1.37546 1.25723 1.20862 0.79619 0.83119 0.84951 1.90632 1.47868 1.35617 1.72681 1.21400 1.00164 0.99091 0.93608 1.18816 0.92179 0.94871 0.94690 1.22437 1.11415 1.21414 1.10531 0.91793 1.27722 0.92594 0.97617 1.06022 1.70895 1.38701 1.21908 1.25819 0.82879 0.76841 0.74583 0.71280 1.20981 1.19046 1.18578 1.22311 0.88796 0.90391 1.00815 0.87444 0.86277 0.88893 0.71877 0.84786 0.87640 0.86071 0.89104 0.92788 0.86393 0.88135 0.89979 1.00871 0.99978 0.94029 0.89938 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.57 10.79 127.77 1.38 2.95 16 2 N -0.26 -6.13 3.74 -361.53 -1.35 -7.48 16 3 N -0.32 -6.63 12.08 -61.29 -0.74 -7.37 16 4 C 0.16 2.59 13.03 180.79 2.36 4.95 16 5 N -0.46 -8.61 7.87 -193.33 -1.52 -10.13 16 6 C 0.15 3.63 7.51 136.70 1.03 4.66 16 7 C 0.59 16.46 7.66 86.76 0.66 17.13 16 8 O -0.57 -20.05 14.18 -3.89 -0.06 -20.10 16 9 N -0.57 -12.40 2.22 -818.40 -1.82 -14.22 16 10 C 0.08 1.05 5.26 86.67 0.46 1.51 16 11 C -0.10 -1.06 4.32 -9.01 -0.04 -1.09 16 12 H 0.16 0.60 8.14 -2.39 -0.02 0.58 16 13 C -0.11 -1.24 6.16 32.19 0.20 -1.04 16 14 C 0.11 2.42 3.98 45.87 0.18 2.60 16 15 H 0.10 2.50 8.01 -2.39 -0.02 2.48 16 16 C 0.10 2.39 6.04 86.65 0.52 2.92 16 17 N -0.61 -18.41 2.77 -784.24 -2.17 -20.59 16 18 C 0.52 22.57 7.85 87.66 0.69 23.26 16 19 O -0.59 -30.87 16.23 -3.02 -0.05 -30.92 16 20 C -0.10 -4.67 4.84 29.85 0.14 -4.52 16 21 C 0.03 1.89 3.57 29.85 0.11 2.00 16 22 C -0.62 -37.40 9.11 25.60 0.23 -37.16 16 23 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 24 C -0.04 -2.62 5.46 84.65 0.46 -2.15 16 25 N -0.94 -62.70 13.65 21.45 0.29 -62.41 16 26 Si 1.13 51.61 29.90 68.60 2.05 53.66 16 27 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 28 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 29 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 30 C 0.10 2.09 5.49 86.83 0.48 2.56 16 31 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.12 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.09 2.33 6.47 -2.39 -0.02 2.32 16 34 H 0.27 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.14 1.97 4.37 -8.07 -0.04 1.94 16 36 H 0.11 0.85 8.10 -2.39 -0.02 0.83 16 37 H 0.12 0.65 7.90 -2.39 -0.02 0.63 16 38 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.05 1.76 7.02 -2.39 -0.02 1.74 16 40 H 0.12 1.79 8.12 -2.39 -0.02 1.77 16 41 H 0.10 4.06 8.14 -2.39 -0.02 4.04 16 42 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 43 H -0.03 -1.80 7.97 -2.38 -0.02 -1.82 16 44 H -0.02 -1.17 7.96 -2.39 -0.02 -1.19 16 45 H 0.25 17.54 7.22 -92.71 -0.67 16.87 16 46 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 47 H 0.05 1.19 7.78 -2.39 -0.02 1.17 16 Total: -1.00 -92.51 378.78 4.56 -87.94 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.07 Total: 13.07 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 8.86 Total: 18.55 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -7.31 Total: -122.20 kcal Atomic # 8 Polarization: -50.92 SS G_CDS: -0.10 Total: -51.02 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.05 Total: 53.66 kcal Total: -92.51 4.56 -87.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270904147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.130 kcal (2) G-P(sol) polarization free energy of solvation -92.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds