Wall clock time and date at job start Wed Apr 1 2020 05:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28707 * 126.03710 * 2 1 4 4 N 1.28516 * 110.63872 * 179.97438 * 3 2 1 5 5 C 1.33323 * 109.43674 * 0.02562 * 4 3 2 6 6 C 1.37002 * 106.37075 * 359.77433 * 5 4 3 7 7 C 1.47237 * 127.18781 * 180.24709 * 6 5 4 8 8 O 1.21625 * 120.00124 * 184.77157 * 7 6 5 9 9 N 1.34776 * 120.00214 * 4.76301 * 7 6 5 10 10 C 1.47137 * 125.60355 * 3.96107 * 9 7 6 11 11 C 1.54576 * 107.33316 * 180.78550 * 10 9 7 12 12 C 1.53711 * 102.69806 * 21.26705 * 11 10 9 13 13 C 1.53203 * 111.54378 * 205.80550 * 12 11 10 14 14 C 1.54808 * 101.39058 * 214.18227 * 13 12 11 15 15 N 1.46929 * 105.53877 * 24.16938 * 14 13 12 16 16 C 1.46497 * 124.37519 * 163.27793 * 15 14 13 17 17 C 1.53001 * 109.47421 * 89.99745 * 16 15 14 18 18 C 1.50700 * 109.47209 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00048 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99832 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00078 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99774 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47362 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47562 * 119.99419 * 22 20 18 25 25 H 1.48506 * 109.46921 * 239.99497 * 22 20 18 26 26 C 1.34889 * 111.24214 * 343.25098 * 15 14 13 27 27 O 1.21281 * 125.21723 * 181.26704 * 26 15 14 28 28 C 1.47708 * 125.60939 * 184.26786 * 9 7 6 29 29 H 1.09006 * 109.46882 * 85.14453 * 1 2 3 30 30 H 1.08993 * 109.47614 * 205.14248 * 1 2 3 31 31 H 1.09005 * 109.47144 * 325.15332 * 1 2 3 32 32 H 1.08001 * 126.81497 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.87809 * 300.37127 * 10 9 7 34 34 H 1.08999 * 109.87233 * 61.50379 * 10 9 7 35 35 H 1.09003 * 110.99119 * 262.88458 * 11 10 9 36 36 H 1.09001 * 110.75438 * 139.54223 * 11 10 9 37 37 H 1.08996 * 111.04202 * 332.20589 * 13 12 11 38 38 H 1.09004 * 111.04051 * 96.11547 * 13 12 11 39 39 H 1.08995 * 110.23139 * 143.18924 * 14 13 12 40 40 H 1.09002 * 110.23131 * 265.06670 * 14 13 12 41 41 H 1.09001 * 109.46811 * 209.99953 * 16 15 14 42 42 H 1.08997 * 109.47326 * 329.99597 * 16 15 14 43 43 H 1.08992 * 109.47228 * 300.00171 * 17 16 15 44 44 H 1.09004 * 109.46646 * 59.99893 * 17 16 15 45 45 H 0.96998 * 120.00013 * 180.02562 * 21 20 18 46 46 H 1.08999 * 110.38809 * 276.20567 * 28 9 7 47 47 H 1.08987 * 110.39061 * 38.47743 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4612 0.6995 0.0005 5 6 3.5551 -0.6304 0.0004 6 6 2.2711 -1.1082 0.0048 7 6 1.8461 -2.5178 0.0115 8 8 0.6654 -2.7974 -0.0726 9 7 2.7654 -3.4984 0.1107 10 6 4.2110 -3.3013 0.3006 11 6 4.8658 -4.7010 0.3372 12 6 3.8238 -5.5801 -0.3727 13 6 3.9209 -7.0416 0.0766 14 6 3.5514 -7.7878 -1.2285 15 7 3.8709 -6.8560 -2.3186 16 6 4.0161 -7.2452 -3.7235 17 6 2.6592 -7.1448 -4.4234 18 6 2.8088 -7.5445 -5.8687 19 1 3.7750 -7.8401 -6.2501 20 6 1.7122 -7.5318 -6.7045 21 7 0.5357 -7.1713 -6.2402 22 14 1.8974 -8.0279 -8.4958 23 1 3.3125 -8.3884 -8.7659 24 1 1.0259 -9.1966 -8.7785 25 1 1.5012 -6.8927 -9.3673 26 6 4.0126 -5.5959 -1.8587 27 8 4.2554 -4.6247 -2.5433 28 6 2.4881 -4.9475 0.0403 29 1 -0.3633 0.0870 -1.0240 30 1 -0.3634 -0.9302 0.4366 31 1 -0.3634 0.8434 0.5872 32 1 4.4632 -1.2151 0.0011 33 1 4.6179 -2.7210 -0.5276 34 1 4.3939 -2.7844 1.2427 35 1 5.0174 -5.0345 1.3638 36 1 5.8084 -4.7010 -0.2103 37 1 4.9343 -7.2869 0.3940 38 1 3.2025 -7.2564 0.8677 39 1 4.1448 -8.6971 -1.3236 40 1 2.4885 -8.0294 -1.2366 41 1 4.7275 -6.5801 -4.2130 42 1 4.3793 -8.2712 -3.7806 43 1 1.9478 -7.8098 -3.9339 44 1 2.2960 -6.1186 -4.3663 45 1 -0.2358 -7.1627 -6.8281 46 1 2.1758 -5.3222 1.0151 47 1 1.7219 -5.1517 -0.7074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272152547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:35 Heat of formation + Delta-G solvation = 49.409700 kcal Electronic energy + Delta-G solvation = -31284.514247 eV Core-core repulsion = 27084.269689 eV Total energy + Delta-G solvation = -4200.244558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.49847 -41.29424 -39.40603 -37.26114 -36.14627 -34.85577 -34.02059 -32.76496 -31.61543 -30.68551 -29.23934 -28.34665 -28.10078 -25.77825 -25.02416 -23.69247 -22.77779 -22.37680 -22.00047 -20.52720 -20.09424 -18.84613 -17.65614 -17.18468 -17.07379 -16.67823 -16.46301 -15.81845 -15.64484 -15.61133 -14.96428 -14.76280 -14.44913 -14.26768 -13.89956 -13.54477 -13.41010 -13.34197 -13.24779 -13.01470 -12.80160 -12.75597 -12.45410 -12.40167 -12.26136 -11.91959 -11.69781 -11.38811 -11.34217 -11.11896 -11.00321 -10.97457 -10.69022 -10.44166 -10.30894 -10.05500 -9.90551 -9.70044 -9.43243 -9.16352 -8.96024 -8.40910 -8.11227 -6.05306 -4.09288 0.72592 1.81636 2.11281 2.66015 2.78951 2.86387 3.28525 3.34765 3.38170 3.43259 3.89745 4.00556 4.16704 4.19729 4.34213 4.42768 4.51231 4.59498 4.69469 4.76923 4.83072 4.90465 5.09147 5.15858 5.19622 5.27202 5.30978 5.35236 5.40027 5.46115 5.53613 5.59238 5.66736 5.71055 5.77228 5.86566 5.92326 5.99002 6.14857 6.38369 6.74219 6.89374 7.07391 7.41023 7.61631 7.70424 7.77725 7.93378 8.14005 8.29008 8.54239 8.97539 9.55216 11.06007 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.003032 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.339580 B = 9232.399131 C =10713.567361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.255 5.255 3 N -0.061 5.061 4 N -0.275 5.275 5 C -0.006 4.006 6 C -0.063 4.063 7 C 0.613 3.387 8 O -0.533 6.533 9 N -0.596 5.596 10 C 0.089 3.911 11 C -0.105 4.105 12 C -0.116 4.116 13 C -0.116 4.116 14 C 0.099 3.901 15 N -0.610 5.610 16 C 0.129 3.871 17 C 0.012 3.988 18 C -0.523 4.523 19 H 0.058 0.942 20 C 0.059 3.941 21 N -0.891 5.891 22 Si 0.894 3.106 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.527 3.473 27 O -0.519 6.519 28 C 0.138 3.862 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.207 0.793 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.017 0.983 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.087 0.913 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.807 4.858 21.298 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.052 5.052 3 N -0.042 5.042 4 N -0.137 5.137 5 C -0.167 4.167 6 C -0.197 4.197 7 C 0.400 3.600 8 O -0.410 6.410 9 N -0.328 5.328 10 C -0.033 4.033 11 C -0.143 4.143 12 C -0.120 4.120 13 C -0.154 4.154 14 C -0.025 4.025 15 N -0.343 5.343 16 C 0.009 3.991 17 C -0.026 4.026 18 C -0.562 4.562 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.530 5.530 22 Si 0.722 3.278 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.209 1.209 26 C 0.312 3.688 27 O -0.395 6.395 28 C 0.016 3.984 29 H 0.116 0.884 30 H 0.136 0.864 31 H 0.120 0.880 32 H 0.223 0.777 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.035 0.965 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.064 6.824 20.723 22.397 hybrid contribution -0.271 -1.491 -1.219 1.945 sum 4.793 5.332 19.504 20.780 Atomic orbital electron populations 1.22603 0.71307 1.06827 1.05896 1.47630 1.09927 1.03350 1.44246 1.78251 0.96820 1.11498 1.17608 1.74912 1.09094 1.12620 1.17096 1.24517 0.97303 0.91919 1.02918 1.21778 0.91589 0.90588 1.15795 1.16155 0.84744 0.82080 0.77015 1.90820 1.16057 1.83281 1.50850 1.47970 1.07688 1.06131 1.71057 1.22565 0.79928 0.98909 1.01894 1.22411 0.98134 0.92466 1.01281 1.21631 0.97142 0.97322 0.95921 1.22479 1.03683 0.91506 0.97761 1.22144 1.01602 0.93293 0.85432 1.48684 1.68706 1.07915 1.09019 1.21824 1.01553 0.99238 0.76496 1.19405 0.90587 0.97829 0.94802 1.21105 0.94937 1.45639 0.94515 0.92423 1.25008 0.95272 0.95182 0.98814 1.69982 0.99558 1.47698 1.35765 0.86499 0.78198 0.78180 0.84905 1.19638 1.20960 1.20941 1.19865 0.77087 0.83350 0.88512 1.90715 1.48688 1.36663 1.63400 1.21978 0.96008 0.78025 1.02430 0.88398 0.86423 0.88010 0.77708 0.89529 0.90256 0.89107 0.88963 0.89255 0.88827 0.90269 0.90820 0.91123 0.91500 0.96464 0.96204 0.92949 0.89503 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 11.02 59.85 0.66 1.32 16 2 N -0.25 -3.22 3.79 -64.12 -0.24 -3.46 16 3 N -0.06 -0.85 13.14 60.35 0.79 -0.05 16 4 N -0.27 -3.88 12.35 30.47 0.38 -3.51 16 5 C -0.01 -0.08 10.58 -17.35 -0.18 -0.26 16 6 C -0.06 -0.84 6.93 -82.33 -0.57 -1.41 16 7 C 0.61 8.64 7.83 -12.60 -0.10 8.54 16 8 O -0.53 -8.72 15.11 5.26 0.08 -8.64 16 9 N -0.60 -7.22 3.34 -172.29 -0.58 -7.79 16 10 C 0.09 0.80 4.80 -2.87 -0.01 0.79 16 11 C -0.10 -0.82 5.80 -25.53 -0.15 -0.97 16 12 C -0.12 -1.25 0.67 -155.38 -0.10 -1.35 16 13 C -0.12 -0.90 6.26 -25.67 -0.16 -1.06 16 14 C 0.10 1.13 7.37 -2.86 -0.02 1.11 16 15 N -0.61 -10.11 2.95 -172.56 -0.51 -10.62 16 16 C 0.13 2.60 5.88 -4.04 -0.02 2.58 16 17 C 0.01 0.30 5.30 -27.88 -0.15 0.15 16 18 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.04 13.29 55.43 0.74 -26.31 16 22 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.53 8.74 6.77 -11.37 -0.08 8.66 16 27 O -0.52 -10.80 17.26 5.56 0.10 -10.71 16 28 C 0.14 1.59 5.88 -3.14 -0.02 1.58 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.12 1.11 6.28 -51.93 -0.33 0.78 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.21 1.87 4.62 -52.49 -0.24 1.63 16 33 H 0.09 0.87 6.26 -51.93 -0.33 0.55 16 34 H 0.08 0.49 7.61 -51.93 -0.40 0.10 16 35 H 0.09 0.43 8.04 -51.93 -0.42 0.02 16 36 H 0.09 0.75 8.00 -51.93 -0.42 0.33 16 37 H 0.09 0.52 7.96 -51.93 -0.41 0.11 16 38 H 0.09 0.50 7.63 -51.93 -0.40 0.11 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.51 7.96 -51.93 -0.41 1.10 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.09 0.75 7.74 -51.93 -0.40 0.35 16 47 H 0.09 1.33 7.98 -51.94 -0.41 0.91 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -38.10 384.89 -6.45 -44.55 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.66 Total: -2.19 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -1.32 Total: 6.27 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.58 Total: -51.74 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.18 Total: -19.34 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.10 -6.45 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272152547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.964 kcal (2) G-P(sol) polarization free energy of solvation -38.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds