Wall clock time and date at job start Wed Apr 1 2020 05:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28707 * 126.03710 * 2 1 4 4 N 1.28516 * 110.63872 * 179.97438 * 3 2 1 5 5 C 1.33323 * 109.43674 * 0.02562 * 4 3 2 6 6 C 1.37002 * 106.37075 * 359.77433 * 5 4 3 7 7 C 1.47237 * 127.18781 * 180.24709 * 6 5 4 8 8 O 1.21625 * 120.00124 * 184.77157 * 7 6 5 9 9 N 1.34776 * 120.00214 * 4.76301 * 7 6 5 10 10 C 1.47137 * 125.60355 * 3.96107 * 9 7 6 11 11 C 1.54576 * 107.33316 * 180.78550 * 10 9 7 12 12 C 1.53711 * 102.69806 * 21.26705 * 11 10 9 13 13 C 1.53203 * 111.54378 * 205.80550 * 12 11 10 14 14 C 1.54808 * 101.39058 * 214.18227 * 13 12 11 15 15 N 1.46929 * 105.53877 * 24.16938 * 14 13 12 16 16 C 1.46497 * 124.37519 * 163.27793 * 15 14 13 17 17 C 1.53001 * 109.47421 * 89.99745 * 16 15 14 18 18 C 1.50700 * 109.47209 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00048 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99832 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00078 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99774 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47362 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47562 * 119.99419 * 22 20 18 25 25 H 1.48506 * 109.46921 * 239.99497 * 22 20 18 26 26 C 1.34889 * 111.24214 * 343.25098 * 15 14 13 27 27 O 1.21281 * 125.21723 * 181.26704 * 26 15 14 28 28 C 1.47708 * 125.60939 * 184.26786 * 9 7 6 29 29 H 1.09006 * 109.46882 * 85.14453 * 1 2 3 30 30 H 1.08993 * 109.47614 * 205.14248 * 1 2 3 31 31 H 1.09005 * 109.47144 * 325.15332 * 1 2 3 32 32 H 1.08001 * 126.81497 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.87809 * 300.37127 * 10 9 7 34 34 H 1.08999 * 109.87233 * 61.50379 * 10 9 7 35 35 H 1.09003 * 110.99119 * 262.88458 * 11 10 9 36 36 H 1.09001 * 110.75438 * 139.54223 * 11 10 9 37 37 H 1.08996 * 111.04202 * 332.20589 * 13 12 11 38 38 H 1.09004 * 111.04051 * 96.11547 * 13 12 11 39 39 H 1.08995 * 110.23139 * 143.18924 * 14 13 12 40 40 H 1.09002 * 110.23131 * 265.06670 * 14 13 12 41 41 H 1.09001 * 109.46811 * 209.99953 * 16 15 14 42 42 H 1.08997 * 109.47326 * 329.99597 * 16 15 14 43 43 H 1.08992 * 109.47228 * 300.00171 * 17 16 15 44 44 H 1.09004 * 109.46646 * 59.99893 * 17 16 15 45 45 H 0.96998 * 120.00013 * 180.02562 * 21 20 18 46 46 H 1.08999 * 110.38809 * 276.20567 * 28 9 7 47 47 H 1.08987 * 110.39061 * 38.47743 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0408 0.0000 4 7 3.4612 0.6995 0.0005 5 6 3.5551 -0.6304 0.0004 6 6 2.2711 -1.1082 0.0048 7 6 1.8461 -2.5178 0.0115 8 8 0.6654 -2.7974 -0.0726 9 7 2.7654 -3.4984 0.1107 10 6 4.2110 -3.3013 0.3006 11 6 4.8658 -4.7010 0.3372 12 6 3.8238 -5.5801 -0.3727 13 6 3.9209 -7.0416 0.0766 14 6 3.5514 -7.7878 -1.2285 15 7 3.8709 -6.8560 -2.3186 16 6 4.0161 -7.2452 -3.7235 17 6 2.6592 -7.1448 -4.4234 18 6 2.8088 -7.5445 -5.8687 19 1 3.7750 -7.8401 -6.2501 20 6 1.7122 -7.5318 -6.7045 21 7 0.5357 -7.1713 -6.2402 22 14 1.8974 -8.0279 -8.4958 23 1 3.3125 -8.3884 -8.7659 24 1 1.0259 -9.1966 -8.7785 25 1 1.5012 -6.8927 -9.3673 26 6 4.0126 -5.5959 -1.8587 27 8 4.2554 -4.6247 -2.5433 28 6 2.4881 -4.9475 0.0403 29 1 -0.3633 0.0870 -1.0240 30 1 -0.3634 -0.9302 0.4366 31 1 -0.3634 0.8434 0.5872 32 1 4.4632 -1.2151 0.0011 33 1 4.6179 -2.7210 -0.5276 34 1 4.3939 -2.7844 1.2427 35 1 5.0174 -5.0345 1.3638 36 1 5.8084 -4.7010 -0.2103 37 1 4.9343 -7.2869 0.3940 38 1 3.2025 -7.2564 0.8677 39 1 4.1448 -8.6971 -1.3236 40 1 2.4885 -8.0294 -1.2366 41 1 4.7275 -6.5801 -4.2130 42 1 4.3793 -8.2712 -3.7806 43 1 1.9478 -7.8098 -3.9339 44 1 2.2960 -6.1186 -4.3663 45 1 -0.2358 -7.1627 -6.8281 46 1 2.1758 -5.3222 1.0151 47 1 1.7219 -5.1517 -0.7074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272152547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:34 Heat of formation + Delta-G solvation = 20.563384 kcal Electronic energy + Delta-G solvation = -31285.765118 eV Core-core repulsion = 27084.269689 eV Total energy + Delta-G solvation = -4201.495428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.49169 -42.31138 -40.51575 -38.34281 -37.46936 -35.93183 -35.60106 -34.31287 -32.81356 -31.82906 -30.52493 -29.29720 -29.03031 -27.17783 -26.45181 -24.72346 -23.79189 -23.49830 -23.26628 -21.81916 -21.05091 -20.02999 -18.72353 -18.64277 -18.12481 -18.04145 -17.45848 -17.11898 -16.83596 -16.71911 -16.55559 -16.01821 -15.65093 -15.33314 -14.88149 -14.62155 -14.50956 -14.39308 -14.35239 -14.19738 -14.00936 -13.83535 -13.77332 -13.59366 -13.35845 -13.12118 -12.93037 -12.82996 -12.53879 -12.42421 -12.32115 -12.06071 -11.99283 -11.77764 -11.65206 -11.43952 -11.41155 -11.33536 -10.72606 -10.66616 -10.58369 -9.88802 -9.54329 -8.27719 -6.41142 -0.28078 0.91182 1.09407 1.35701 1.37488 1.50337 1.54367 1.73897 1.85620 2.15189 2.38580 2.99217 3.06006 3.24098 3.24963 3.29808 3.49393 3.64097 3.77540 3.87520 3.99391 4.12681 4.21801 4.27847 4.35574 4.40409 4.44173 4.50804 4.54264 4.60859 4.62552 4.68795 4.78272 4.81651 4.84846 4.90771 5.01480 5.07755 5.18248 5.21825 5.24164 5.30658 5.42339 5.57731 5.79828 6.11340 6.12521 6.31702 6.67651 6.75451 7.12550 7.22544 7.29618 8.84555 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.003032 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.339580 B = 9232.399131 C =10713.567361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.254 5.254 3 N -0.074 5.074 4 N -0.298 5.298 5 C 0.003 3.997 6 C -0.079 4.079 7 C 0.605 3.395 8 O -0.569 6.569 9 N -0.596 5.596 10 C 0.078 3.922 11 C -0.093 4.093 12 C -0.107 4.107 13 C -0.095 4.095 14 C 0.085 3.915 15 N -0.621 5.621 16 C 0.144 3.856 17 C 0.024 3.976 18 C -0.543 4.543 19 H 0.069 0.931 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.971 3.029 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.284 1.284 26 C 0.509 3.491 27 O -0.576 6.576 28 C 0.135 3.865 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.132 0.868 32 H 0.233 0.767 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.141 0.859 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.093 0.907 43 H -0.002 1.002 44 H -0.035 1.035 45 H 0.264 0.736 46 H 0.129 0.871 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.840 3.187 23.535 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.051 5.051 3 N -0.055 5.055 4 N -0.159 5.159 5 C -0.157 4.157 6 C -0.213 4.213 7 C 0.392 3.608 8 O -0.449 6.449 9 N -0.327 5.327 10 C -0.043 4.043 11 C -0.131 4.131 12 C -0.111 4.111 13 C -0.132 4.132 14 C -0.036 4.036 15 N -0.353 5.353 16 C 0.022 3.978 17 C -0.014 4.014 18 C -0.582 4.582 19 H 0.087 0.913 20 C -0.200 4.200 21 N -0.574 5.574 22 Si 0.795 3.205 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.210 1.210 26 C 0.297 3.703 27 O -0.455 6.455 28 C 0.013 3.987 29 H 0.120 0.880 30 H 0.131 0.869 31 H 0.150 0.850 32 H 0.249 0.751 33 H 0.088 0.912 34 H 0.135 0.865 35 H 0.159 0.841 36 H 0.110 0.890 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.121 0.879 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.017 0.983 44 H -0.016 1.016 45 H 0.072 0.928 46 H 0.147 0.853 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.132 5.120 23.006 24.624 hybrid contribution -0.961 -0.978 -1.960 2.392 sum 6.170 4.142 21.046 22.320 Atomic orbital electron populations 1.22850 0.69709 1.07890 1.06701 1.47936 1.10956 1.03008 1.43217 1.78192 0.97081 1.11970 1.18211 1.74886 1.09356 1.13592 1.18113 1.24980 0.97922 0.91384 1.01433 1.21875 0.92202 0.90456 1.16784 1.16360 0.84695 0.82748 0.76953 1.90790 1.17489 1.83841 1.52776 1.48137 1.08847 1.06040 1.69688 1.22875 0.77899 1.00432 1.03092 1.22551 0.96590 0.90412 1.03502 1.21599 0.97757 1.00388 0.91380 1.22617 1.06826 0.87583 0.96185 1.22540 1.01548 0.93822 0.85731 1.48816 1.68419 1.09514 1.08531 1.21319 0.97386 1.00309 0.78796 1.19208 0.93313 0.93743 0.95140 1.21595 0.95487 1.45384 0.95715 0.91315 1.26061 0.94796 0.94964 1.04161 1.70135 1.00590 1.48938 1.37771 0.85312 0.79075 0.77873 0.78267 1.17937 1.19788 1.20971 1.21042 0.75537 0.82386 0.91348 1.90668 1.50944 1.38365 1.65547 1.22145 0.95365 0.78135 1.03103 0.88041 0.86946 0.84985 0.75115 0.91199 0.86485 0.84065 0.89004 0.85714 0.85217 0.87859 0.91980 0.92964 0.88852 0.98345 1.01646 0.92769 0.85313 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 11.02 127.77 1.41 2.65 16 2 N -0.25 -6.50 3.79 -356.76 -1.35 -7.86 16 3 N -0.07 -2.06 13.14 37.02 0.49 -1.58 16 4 N -0.30 -8.38 12.35 -57.50 -0.71 -9.09 16 5 C 0.00 0.08 10.58 84.18 0.89 0.97 16 6 C -0.08 -2.10 6.93 40.41 0.28 -1.82 16 7 C 0.61 17.44 7.83 86.61 0.68 18.11 16 8 O -0.57 -19.54 15.11 -4.11 -0.06 -19.60 16 9 N -0.60 -13.99 3.34 -817.24 -2.73 -16.72 16 10 C 0.08 1.22 4.80 86.79 0.42 1.64 16 11 C -0.09 -1.07 5.80 31.37 0.18 -0.88 16 12 C -0.11 -2.05 0.67 -52.75 -0.04 -2.09 16 13 C -0.09 -1.01 6.26 31.28 0.20 -0.81 16 14 C 0.09 1.77 7.37 86.91 0.64 2.41 16 15 N -0.62 -20.75 2.95 -818.20 -2.41 -23.17 16 16 C 0.14 6.00 5.88 86.38 0.51 6.51 16 17 C 0.02 1.32 5.30 29.85 0.16 1.47 16 18 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 19 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 20 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 21 N -0.93 -58.94 13.29 21.45 0.28 -58.65 16 22 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 26 C 0.51 17.15 6.77 87.36 0.59 17.74 16 27 O -0.58 -25.32 17.26 -3.03 -0.05 -25.37 16 28 C 0.13 2.95 5.88 86.30 0.51 3.46 16 29 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.11 2.22 6.28 -2.39 -0.02 2.21 16 31 H 0.13 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.23 3.92 4.62 -2.91 -0.01 3.91 16 33 H 0.07 1.34 6.26 -2.39 -0.01 1.33 16 34 H 0.12 0.98 7.61 -2.39 -0.02 0.96 16 35 H 0.14 0.32 8.04 -2.39 -0.02 0.30 16 36 H 0.09 1.16 8.00 -2.39 -0.02 1.14 16 37 H 0.12 0.59 7.96 -2.39 -0.02 0.57 16 38 H 0.13 0.58 7.63 -2.38 -0.02 0.56 16 39 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.05 2.34 7.96 -2.39 -0.02 2.32 16 42 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H -0.03 -2.26 8.14 -2.39 -0.02 -2.28 16 45 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.13 1.77 7.74 -2.39 -0.02 1.75 16 47 H 0.04 1.35 7.98 -2.39 -0.02 1.33 16 Total: -1.00 -92.16 384.89 3.59 -88.57 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 1.00 Total: 7.94 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 7.12 Total: 18.46 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -6.44 Total: -117.06 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -0.11 Total: -44.97 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -92.16 3.59 -88.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272152547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.137 kcal (2) G-P(sol) polarization free energy of solvation -92.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds