Wall clock time and date at job start Wed Apr 1 2020 05:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28712 * 126.03224 * 2 1 4 4 N 1.28513 * 110.63751 * 180.02562 * 3 2 1 5 5 C 1.33323 * 109.43715 * 359.76724 * 4 3 2 6 6 C 1.37008 * 106.37115 * 0.36803 * 5 4 3 7 7 C 1.47231 * 127.18775 * 179.90499 * 6 5 4 8 8 O 1.21618 * 120.00102 * 173.29105 * 7 6 5 9 9 N 1.34780 * 119.99899 * 353.29379 * 7 6 5 10 10 C 1.47653 * 125.81498 * 354.37441 * 9 7 6 11 11 C 1.54972 * 104.86044 * 204.01988 * 10 9 7 12 12 C 1.55330 * 101.67222 * 323.41097 * 11 10 9 13 13 C 1.46227 * 125.81416 * 174.41047 * 9 7 6 14 14 C 1.53896 * 110.91086 * 299.82184 * 13 9 7 15 15 C 1.54647 * 101.59313 * 144.74692 * 14 13 9 16 16 N 1.46847 * 105.50376 * 335.22697 * 15 14 13 17 17 C 1.46501 * 124.36478 * 196.85518 * 16 15 14 18 18 C 1.53002 * 109.47200 * 89.99551 * 17 16 15 19 19 C 1.50700 * 109.46996 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99869 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99939 * 180.27198 * 19 18 17 22 22 N 1.31510 * 120.00050 * 359.73573 * 21 19 18 23 23 Si 1.86804 * 119.99778 * 179.72692 * 21 19 18 24 24 H 1.48495 * 109.47180 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46893 * 120.00589 * 23 21 19 26 26 H 1.48504 * 109.47178 * 240.00302 * 23 21 19 27 27 C 1.34652 * 111.26579 * 17.11408 * 16 15 14 28 28 O 1.21276 * 125.07183 * 178.90067 * 27 16 15 29 29 H 1.09004 * 109.47571 * 264.68893 * 1 2 3 30 30 H 1.09000 * 109.47392 * 24.68976 * 1 2 3 31 31 H 1.09000 * 109.47330 * 144.68736 * 1 2 3 32 32 H 1.08000 * 126.81380 * 180.25722 * 5 4 3 33 33 H 1.08995 * 110.36515 * 322.87429 * 10 9 7 34 34 H 1.09010 * 110.35831 * 85.06899 * 10 9 7 35 35 H 1.09004 * 110.98557 * 81.50665 * 11 10 9 36 36 H 1.08997 * 110.98889 * 205.27465 * 11 10 9 37 37 H 1.09003 * 110.75714 * 276.58505 * 12 11 10 38 38 H 1.08990 * 110.76587 * 153.19672 * 12 11 10 39 39 H 1.09004 * 110.99955 * 26.67446 * 14 13 9 40 40 H 1.08997 * 111.00432 * 262.82424 * 14 13 9 41 41 H 1.09004 * 110.23659 * 216.21613 * 15 14 13 42 42 H 1.09001 * 110.24124 * 94.23560 * 15 14 13 43 43 H 1.09000 * 109.46923 * 329.99752 * 17 16 15 44 44 H 1.08993 * 109.46857 * 209.99828 * 17 16 15 45 45 H 1.09000 * 109.47019 * 60.00259 * 18 17 16 46 46 H 1.08993 * 109.47442 * 299.99918 * 18 17 16 47 47 H 0.97002 * 119.99665 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2221 1.0409 0.0000 4 7 3.4611 0.6997 -0.0005 5 6 3.5551 -0.6302 0.0042 6 6 2.2711 -1.1081 -0.0007 7 6 1.8462 -2.5178 -0.0002 8 8 0.6687 -2.7979 0.1181 9 7 2.7623 -3.4977 -0.1309 10 6 4.2015 -3.3050 -0.3984 11 6 4.6647 -4.6303 -1.0547 12 6 3.8210 -5.6776 -0.2775 13 6 2.4999 -4.9329 -0.0326 14 6 1.9311 -5.2938 1.3511 15 6 0.9421 -6.4279 0.9944 16 7 0.5754 -6.2018 -0.4095 17 6 -0.5871 -6.8032 -1.0677 18 6 -1.7985 -5.8830 -0.9041 19 6 -2.9941 -6.5013 -1.5817 20 1 -2.8995 -7.4554 -2.0789 21 6 -4.2075 -5.8466 -1.5713 22 7 -4.3227 -4.6850 -0.9656 23 14 -5.6877 -6.6096 -2.4178 24 1 -5.2978 -7.9097 -3.0201 25 1 -6.7680 -6.8294 -1.4230 26 1 -6.1740 -5.6962 -3.4830 27 6 1.4486 -5.3749 -1.0152 28 8 1.3947 -5.0352 -2.1782 29 1 -0.3634 -0.0951 1.0233 30 1 -0.3634 0.9337 -0.4293 31 1 -0.3634 -0.8386 -0.5940 32 1 4.4632 -1.2148 0.0089 33 1 4.3517 -2.4701 -1.0827 34 1 4.7407 -3.1325 0.5332 35 1 4.4228 -4.6450 -2.1175 36 1 5.7310 -4.7923 -0.8969 37 1 4.3000 -5.9355 0.6671 38 1 3.6560 -6.5679 -0.8841 39 1 1.4091 -4.4448 1.7925 40 1 2.7170 -5.6551 2.0144 41 1 0.0578 -6.3705 1.6292 42 1 1.4251 -7.3986 1.1064 43 1 -0.8017 -7.7705 -0.6135 44 1 -0.3744 -6.9388 -2.1280 45 1 -1.5839 -4.9156 -1.3583 46 1 -2.0112 -5.7473 0.1562 47 1 -5.1763 -4.2243 -0.9586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272152713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:45 Heat of formation + Delta-G solvation = 54.972356 kcal Electronic energy + Delta-G solvation = -32220.064233 eV Core-core repulsion = 28020.060890 eV Total energy + Delta-G solvation = -4200.003343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.45469 -41.36440 -38.86748 -37.34352 -36.00613 -34.74484 -33.74279 -32.65272 -31.81156 -31.00329 -29.12310 -28.14318 -27.92368 -25.46922 -24.91427 -23.50404 -22.90807 -22.37756 -21.85774 -20.84038 -19.91880 -18.74164 -17.56642 -17.09654 -16.97185 -16.70507 -16.38086 -15.72252 -15.61987 -15.26967 -14.74402 -14.58118 -14.43629 -14.27755 -13.65091 -13.49896 -13.40784 -13.32454 -13.05225 -12.99618 -12.78376 -12.68262 -12.33747 -12.22733 -12.12501 -11.88592 -11.42120 -11.38422 -11.28702 -11.25129 -10.96379 -10.83798 -10.65806 -10.34601 -10.14368 -9.99389 -9.85542 -9.74336 -9.63012 -9.17263 -8.64234 -8.34954 -8.01371 -5.99457 -4.03195 0.80567 1.85675 2.14533 2.54854 2.93663 3.08912 3.30807 3.37815 3.41539 3.53218 3.94205 4.13183 4.23825 4.29826 4.40619 4.46491 4.60115 4.65282 4.68289 4.75736 4.90742 4.96926 5.04231 5.14992 5.29842 5.33402 5.36205 5.36779 5.47666 5.54508 5.57357 5.67746 5.72374 5.76071 5.87883 5.90827 6.04993 6.13793 6.22839 6.45575 6.84306 6.97044 7.13929 7.51492 7.71433 7.84994 7.89004 8.02742 8.18928 8.36050 8.63810 9.04191 9.60411 11.11571 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.003796 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.487302 B = 7373.943771 C = 9307.427582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.250 5.250 3 N -0.061 5.061 4 N -0.277 5.277 5 C -0.014 4.014 6 C -0.058 4.058 7 C 0.604 3.396 8 O -0.499 6.499 9 N -0.584 5.584 10 C 0.086 3.914 11 C -0.131 4.131 12 C -0.109 4.109 13 C 0.136 3.864 14 C -0.136 4.136 15 C 0.105 3.895 16 N -0.603 5.603 17 C 0.129 3.871 18 C 0.015 3.985 19 C -0.522 4.522 20 H 0.056 0.944 21 C 0.059 3.941 22 N -0.890 5.890 23 Si 0.893 3.107 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.521 3.479 28 O -0.522 6.522 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.204 0.796 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.022 0.978 46 H 0.017 0.983 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.741 1.735 7.086 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.046 5.046 3 N -0.042 5.042 4 N -0.140 5.140 5 C -0.174 4.174 6 C -0.193 4.193 7 C 0.389 3.611 8 O -0.372 6.372 9 N -0.319 5.319 10 C -0.036 4.036 11 C -0.169 4.169 12 C -0.147 4.147 13 C 0.047 3.953 14 C -0.175 4.175 15 C -0.019 4.019 16 N -0.336 5.336 17 C 0.010 3.990 18 C -0.023 4.023 19 C -0.561 4.561 20 H 0.075 0.925 21 C -0.142 4.142 22 N -0.529 5.529 23 Si 0.720 3.280 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.305 3.695 28 O -0.398 6.398 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.221 0.779 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.041 0.959 46 H 0.035 0.965 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 19.754 3.485 6.535 21.097 hybrid contribution -1.220 -1.391 -0.350 1.883 sum 18.535 2.094 6.185 19.651 Atomic orbital electron populations 1.22624 0.70682 1.06841 1.06290 1.47690 1.10172 1.03247 1.43489 1.78268 0.96692 1.11504 1.17773 1.74883 1.09313 1.12523 1.17233 1.24339 0.96987 0.92003 1.04075 1.21778 0.91528 0.90610 1.15390 1.16287 0.84904 0.82087 0.77776 1.91005 1.15464 1.82753 1.47937 1.47616 1.08695 1.04265 1.71278 1.22854 0.80443 0.99746 1.00535 1.22863 1.00157 0.92922 1.00991 1.22543 0.91960 0.98320 1.01915 1.21202 0.96739 0.80971 0.96429 1.22973 0.99345 0.99923 0.95242 1.22025 0.98866 0.97344 0.83664 1.48449 1.26740 1.47216 1.11220 1.21815 0.84255 0.96615 0.96360 1.19362 0.90346 0.95144 0.97422 1.21137 0.94273 1.05649 1.35034 0.92528 1.24995 0.98905 0.94860 0.95453 1.70006 1.24950 1.14651 1.43258 0.86532 0.82729 0.79355 0.79350 1.19675 1.21007 1.20994 1.20247 0.82551 0.78994 0.87661 1.90682 1.74956 1.57379 1.16769 0.88195 0.87692 0.86475 0.77936 0.89408 0.90083 0.89628 0.88992 0.89047 0.89336 0.89256 0.88956 0.89863 0.91261 0.91604 0.91232 0.95937 0.96502 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.71 59.85 0.64 1.55 16 2 N -0.25 -3.49 3.79 -64.12 -0.24 -3.73 16 3 N -0.06 -0.89 13.14 60.35 0.79 -0.10 16 4 N -0.28 -3.86 12.35 30.47 0.38 -3.48 16 5 C -0.01 -0.16 10.36 -17.35 -0.18 -0.34 16 6 C -0.06 -0.81 6.91 -82.34 -0.57 -1.37 16 7 C 0.60 9.37 7.18 -12.61 -0.09 9.28 16 8 O -0.50 -9.79 13.76 5.26 0.07 -9.72 16 9 N -0.58 -7.42 2.90 -158.70 -0.46 -7.88 16 10 C 0.09 0.68 5.16 -2.37 -0.01 0.67 16 11 C -0.13 -0.95 7.09 -24.45 -0.17 -1.12 16 12 C -0.11 -0.93 6.07 -25.18 -0.15 -1.08 16 13 C 0.14 1.75 0.72 -132.41 -0.10 1.66 16 14 C -0.14 -1.56 6.21 -25.40 -0.16 -1.72 16 15 C 0.11 1.41 7.36 -2.99 -0.02 1.38 16 16 N -0.60 -11.09 2.94 -172.49 -0.51 -11.59 16 17 C 0.13 2.79 5.89 -4.04 -0.02 2.76 16 18 C 0.02 0.41 5.30 -27.88 -0.15 0.26 16 19 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 20 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -27.32 13.29 55.43 0.74 -26.59 16 23 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.52 9.72 5.77 -11.12 -0.06 9.66 16 28 O -0.52 -11.97 17.60 5.56 0.10 -11.87 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.12 1.68 6.91 -51.93 -0.36 1.32 16 32 H 0.20 1.51 4.97 -52.49 -0.26 1.25 16 33 H 0.09 0.65 5.98 -51.93 -0.31 0.34 16 34 H 0.08 0.40 7.78 -51.92 -0.40 0.00 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.50 7.45 -51.93 -0.39 0.11 16 38 H 0.09 0.81 7.81 -51.93 -0.41 0.41 16 39 H 0.09 1.21 6.92 -51.93 -0.36 0.85 16 40 H 0.09 0.68 7.44 -51.93 -0.39 0.30 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.07 1.57 7.92 -51.93 -0.41 1.16 16 45 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 382.43 15.07 5.76 5.76 Total: -1.00 -39.25 382.43 -6.48 -45.74 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.63 Total: -1.32 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -1.46 Total: 7.89 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.69 Total: -53.37 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.17 Total: -21.59 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.25 -6.48 -45.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272152713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.708 kcal (2) G-P(sol) polarization free energy of solvation -39.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds