Wall clock time and date at job start Wed Apr 1 2020 05:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28712 * 126.03224 * 2 1 4 4 N 1.28513 * 110.63751 * 180.02562 * 3 2 1 5 5 C 1.33323 * 109.43715 * 359.76724 * 4 3 2 6 6 C 1.37008 * 106.37115 * 0.36803 * 5 4 3 7 7 C 1.47231 * 127.18775 * 179.90499 * 6 5 4 8 8 O 1.21618 * 120.00102 * 173.29105 * 7 6 5 9 9 N 1.34780 * 119.99899 * 353.29379 * 7 6 5 10 10 C 1.47653 * 125.81498 * 354.37441 * 9 7 6 11 11 C 1.54972 * 104.86044 * 204.01988 * 10 9 7 12 12 C 1.55330 * 101.67222 * 323.41097 * 11 10 9 13 13 C 1.46227 * 125.81416 * 174.41047 * 9 7 6 14 14 C 1.53896 * 110.91086 * 299.82184 * 13 9 7 15 15 C 1.54647 * 101.59313 * 144.74692 * 14 13 9 16 16 N 1.46847 * 105.50376 * 335.22697 * 15 14 13 17 17 C 1.46501 * 124.36478 * 196.85518 * 16 15 14 18 18 C 1.53002 * 109.47200 * 89.99551 * 17 16 15 19 19 C 1.50700 * 109.46996 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99869 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99939 * 180.27198 * 19 18 17 22 22 N 1.31510 * 120.00050 * 359.73573 * 21 19 18 23 23 Si 1.86804 * 119.99778 * 179.72692 * 21 19 18 24 24 H 1.48495 * 109.47180 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46893 * 120.00589 * 23 21 19 26 26 H 1.48504 * 109.47178 * 240.00302 * 23 21 19 27 27 C 1.34652 * 111.26579 * 17.11408 * 16 15 14 28 28 O 1.21276 * 125.07183 * 178.90067 * 27 16 15 29 29 H 1.09004 * 109.47571 * 264.68893 * 1 2 3 30 30 H 1.09000 * 109.47392 * 24.68976 * 1 2 3 31 31 H 1.09000 * 109.47330 * 144.68736 * 1 2 3 32 32 H 1.08000 * 126.81380 * 180.25722 * 5 4 3 33 33 H 1.08995 * 110.36515 * 322.87429 * 10 9 7 34 34 H 1.09010 * 110.35831 * 85.06899 * 10 9 7 35 35 H 1.09004 * 110.98557 * 81.50665 * 11 10 9 36 36 H 1.08997 * 110.98889 * 205.27465 * 11 10 9 37 37 H 1.09003 * 110.75714 * 276.58505 * 12 11 10 38 38 H 1.08990 * 110.76587 * 153.19672 * 12 11 10 39 39 H 1.09004 * 110.99955 * 26.67446 * 14 13 9 40 40 H 1.08997 * 111.00432 * 262.82424 * 14 13 9 41 41 H 1.09004 * 110.23659 * 216.21613 * 15 14 13 42 42 H 1.09001 * 110.24124 * 94.23560 * 15 14 13 43 43 H 1.09000 * 109.46923 * 329.99752 * 17 16 15 44 44 H 1.08993 * 109.46857 * 209.99828 * 17 16 15 45 45 H 1.09000 * 109.47019 * 60.00259 * 18 17 16 46 46 H 1.08993 * 109.47442 * 299.99918 * 18 17 16 47 47 H 0.97002 * 119.99665 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2221 1.0409 0.0000 4 7 3.4611 0.6997 -0.0005 5 6 3.5551 -0.6302 0.0042 6 6 2.2711 -1.1081 -0.0007 7 6 1.8462 -2.5178 -0.0002 8 8 0.6687 -2.7979 0.1181 9 7 2.7623 -3.4977 -0.1309 10 6 4.2015 -3.3050 -0.3984 11 6 4.6647 -4.6303 -1.0547 12 6 3.8210 -5.6776 -0.2775 13 6 2.4999 -4.9329 -0.0326 14 6 1.9311 -5.2938 1.3511 15 6 0.9421 -6.4279 0.9944 16 7 0.5754 -6.2018 -0.4095 17 6 -0.5871 -6.8032 -1.0677 18 6 -1.7985 -5.8830 -0.9041 19 6 -2.9941 -6.5013 -1.5817 20 1 -2.8995 -7.4554 -2.0789 21 6 -4.2075 -5.8466 -1.5713 22 7 -4.3227 -4.6850 -0.9656 23 14 -5.6877 -6.6096 -2.4178 24 1 -5.2978 -7.9097 -3.0201 25 1 -6.7680 -6.8294 -1.4230 26 1 -6.1740 -5.6962 -3.4830 27 6 1.4486 -5.3749 -1.0152 28 8 1.3947 -5.0352 -2.1782 29 1 -0.3634 -0.0951 1.0233 30 1 -0.3634 0.9337 -0.4293 31 1 -0.3634 -0.8386 -0.5940 32 1 4.4632 -1.2148 0.0089 33 1 4.3517 -2.4701 -1.0827 34 1 4.7407 -3.1325 0.5332 35 1 4.4228 -4.6450 -2.1175 36 1 5.7310 -4.7923 -0.8969 37 1 4.3000 -5.9355 0.6671 38 1 3.6560 -6.5679 -0.8841 39 1 1.4091 -4.4448 1.7925 40 1 2.7170 -5.6551 2.0144 41 1 0.0578 -6.3705 1.6292 42 1 1.4251 -7.3986 1.1064 43 1 -0.8017 -7.7705 -0.6135 44 1 -0.3744 -6.9388 -2.1280 45 1 -1.5839 -4.9156 -1.3583 46 1 -2.0112 -5.7473 0.1562 47 1 -5.1763 -4.2243 -0.9586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272152713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:43 Heat of formation + Delta-G solvation = 24.460601 kcal Electronic energy + Delta-G solvation = -32221.387322 eV Core-core repulsion = 28020.060890 eV Total energy + Delta-G solvation = -4201.326432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.50491 -42.47449 -40.15792 -38.43881 -37.49532 -35.82937 -35.61937 -34.03051 -33.12941 -32.02276 -30.76493 -29.17069 -28.97056 -27.03547 -26.27139 -24.61936 -23.88478 -23.62131 -23.17202 -21.99187 -21.20980 -20.00894 -18.74222 -18.59101 -18.12644 -18.02675 -17.61415 -17.12625 -16.83420 -16.57035 -16.34774 -15.84972 -15.57490 -15.52636 -14.87675 -14.67000 -14.56973 -14.40545 -14.35701 -14.20790 -14.03219 -13.95889 -13.61817 -13.59037 -13.34194 -13.06934 -12.90804 -12.75142 -12.55735 -12.37250 -12.16467 -12.05030 -12.00813 -11.87661 -11.65730 -11.43739 -11.40522 -11.33406 -10.96515 -10.69941 -10.65391 -9.77524 -9.58261 -8.26409 -6.41086 -0.26750 0.82989 1.10954 1.34403 1.36772 1.39531 1.50386 1.81905 1.87982 2.16235 2.38082 3.04000 3.06094 3.25506 3.25725 3.38207 3.54103 3.60365 3.73424 3.83508 3.93958 4.04958 4.11383 4.22777 4.27250 4.38122 4.48288 4.51438 4.57204 4.62473 4.65258 4.78026 4.81379 4.83777 4.86645 4.90242 5.01184 5.13714 5.15369 5.24931 5.29542 5.33460 5.41051 5.55158 5.79367 6.09407 6.14450 6.27708 6.73814 6.76133 7.13065 7.18249 7.29224 8.85914 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010815 B = 0.003796 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.487302 B = 7373.943771 C = 9307.427582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.256 5.256 3 N -0.074 5.074 4 N -0.293 5.293 5 C 0.014 3.986 6 C -0.079 4.079 7 C 0.596 3.404 8 O -0.559 6.559 9 N -0.582 5.582 10 C 0.073 3.927 11 C -0.125 4.125 12 C -0.102 4.102 13 C 0.136 3.864 14 C -0.124 4.124 15 C 0.096 3.904 16 N -0.615 5.615 17 C 0.143 3.857 18 C 0.032 3.968 19 C -0.546 4.546 20 H 0.069 0.931 21 C -0.001 4.001 22 N -0.933 5.933 23 Si 0.973 3.027 24 H -0.256 1.256 25 H -0.272 1.272 26 H -0.282 1.282 27 C 0.503 3.497 28 O -0.583 6.583 29 H 0.109 0.891 30 H 0.129 0.871 31 H 0.085 0.915 32 H 0.248 0.752 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.053 0.947 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.152 0.848 41 H 0.067 0.933 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.052 0.948 45 H -0.038 1.038 46 H -0.008 1.008 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.969 -0.068 8.521 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.053 5.053 3 N -0.055 5.055 4 N -0.154 5.154 5 C -0.147 4.147 6 C -0.213 4.213 7 C 0.383 3.617 8 O -0.437 6.437 9 N -0.315 5.315 10 C -0.047 4.047 11 C -0.163 4.163 12 C -0.140 4.140 13 C 0.047 3.953 14 C -0.162 4.162 15 C -0.026 4.026 16 N -0.347 5.347 17 C 0.022 3.978 18 C -0.006 4.006 19 C -0.584 4.584 20 H 0.087 0.913 21 C -0.199 4.199 22 N -0.572 5.572 23 Si 0.797 3.203 24 H -0.179 1.179 25 H -0.197 1.197 26 H -0.208 1.208 27 C 0.290 3.710 28 O -0.463 6.463 29 H 0.127 0.873 30 H 0.148 0.852 31 H 0.103 0.897 32 H 0.264 0.736 33 H 0.109 0.891 34 H 0.148 0.852 35 H 0.072 0.928 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.170 0.830 41 H 0.085 0.915 42 H 0.134 0.866 43 H 0.113 0.887 44 H 0.070 0.930 45 H -0.019 1.019 46 H 0.010 0.990 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 23.061 1.665 8.006 24.468 hybrid contribution -2.215 -0.804 -0.817 2.494 sum 20.846 0.862 7.189 22.068 Atomic orbital electron populations 1.22613 0.70411 1.06704 1.06514 1.47850 1.10599 1.03474 1.43367 1.78246 0.97182 1.11737 1.18328 1.74878 1.08993 1.13667 1.17908 1.24998 0.97347 0.91185 1.01141 1.21863 0.92529 0.89930 1.17006 1.16627 0.84605 0.83212 0.77219 1.90984 1.18032 1.83693 1.50968 1.47835 1.10441 1.03683 1.69507 1.23370 0.77608 1.00531 1.03151 1.22908 1.02595 0.91860 0.98901 1.22721 0.89264 0.97493 1.04501 1.21411 0.97277 0.81675 0.94902 1.23061 0.99929 0.98161 0.95061 1.22430 0.99332 1.00619 0.80240 1.48583 1.25551 1.47090 1.13479 1.21344 0.83630 0.96539 0.96327 1.19104 0.93055 0.93528 0.94905 1.21591 0.95098 1.06314 1.35408 0.91290 1.26088 1.02651 0.95211 0.95964 1.70172 1.26092 1.16364 1.44593 0.85285 0.78120 0.78807 0.78132 1.17944 1.19713 1.20777 1.21486 0.83728 0.77876 0.87905 1.90623 1.76837 1.59086 1.19732 0.87260 0.85230 0.89663 0.73644 0.89114 0.85187 0.92779 0.84239 0.83955 0.90160 0.92086 0.82982 0.91472 0.86563 0.88675 0.92994 1.01922 0.99000 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.06 10.71 127.77 1.37 3.43 16 2 N -0.26 -7.43 3.79 -356.77 -1.35 -8.79 16 3 N -0.07 -2.16 13.14 37.02 0.49 -1.67 16 4 N -0.29 -7.78 12.35 -57.50 -0.71 -8.49 16 5 C 0.01 0.29 10.36 84.18 0.87 1.16 16 6 C -0.08 -2.20 6.91 40.41 0.28 -1.92 16 7 C 0.60 19.28 7.18 86.61 0.62 19.90 16 8 O -0.56 -24.13 13.76 -4.09 -0.06 -24.19 16 9 N -0.58 -14.16 2.90 -774.25 -2.25 -16.41 16 10 C 0.07 0.86 5.16 86.83 0.45 1.31 16 11 C -0.12 -1.29 7.09 32.07 0.23 -1.06 16 12 C -0.10 -1.29 6.07 31.60 0.19 -1.09 16 13 C 0.14 3.32 0.72 3.37 0.00 3.32 16 14 C -0.12 -2.55 6.21 31.46 0.20 -2.35 16 15 C 0.10 2.46 7.36 86.87 0.64 3.10 16 16 N -0.62 -23.47 2.94 -818.10 -2.41 -25.88 16 17 C 0.14 6.52 5.89 86.38 0.51 7.02 16 18 C 0.03 1.88 5.30 29.85 0.16 2.04 16 19 C -0.55 -32.81 9.11 25.60 0.23 -32.57 16 20 H 0.07 3.88 7.74 -2.91 -0.02 3.85 16 21 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 22 N -0.93 -60.17 13.29 21.45 0.28 -59.89 16 23 Si 0.97 45.89 29.54 68.60 2.03 47.92 16 24 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 27 C 0.50 19.58 5.77 87.63 0.51 20.09 16 28 O -0.58 -28.82 17.60 -3.02 -0.05 -28.87 16 29 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.08 2.84 6.91 -2.39 -0.02 2.82 16 32 H 0.25 2.58 4.97 -2.91 -0.01 2.57 16 33 H 0.09 1.04 5.98 -2.39 -0.01 1.02 16 34 H 0.13 0.38 7.78 -2.38 -0.02 0.37 16 35 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.14 0.43 7.45 -2.39 -0.02 0.41 16 38 H 0.08 1.21 7.81 -2.39 -0.02 1.20 16 39 H 0.06 1.64 6.92 -2.39 -0.02 1.62 16 40 H 0.15 1.31 7.44 -2.39 -0.02 1.30 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 44 H 0.05 2.51 7.92 -2.39 -0.02 2.49 16 45 H -0.04 -2.62 8.14 -2.39 -0.02 -2.64 16 46 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 47 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -98.42 382.43 3.69 -94.73 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.00 Total: 8.76 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: 6.71 Total: 22.76 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -5.94 Total: -121.11 kcal Atomic # 8 Polarization: -52.95 SS G_CDS: -0.11 Total: -53.06 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -98.42 3.69 -94.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272152713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.195 kcal (2) G-P(sol) polarization free energy of solvation -98.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds