Wall clock time and date at job start Wed Apr 1 2020 05:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00421 * 2 1 4 4 C 1.52997 * 109.47127 * 66.04206 * 3 2 1 5 5 C 1.53002 * 109.47325 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47292 * 180.02562 * 5 4 3 7 7 C 1.46507 * 119.99917 * 270.00029 * 6 5 4 8 8 C 1.34771 * 120.00361 * 90.00044 * 6 5 4 9 9 O 1.21284 * 119.99856 * 354.44687 * 8 6 5 10 10 C 1.50698 * 120.00221 * 174.71812 * 8 6 5 11 11 C 1.53003 * 115.54947 * 71.27346 * 10 8 6 12 12 F 1.39896 * 109.47014 * 66.07082 * 11 10 8 13 13 F 1.39901 * 109.47052 * 186.07149 * 11 10 8 14 14 C 1.53003 * 117.50094 * 285.60267 * 10 8 6 15 15 C 1.53002 * 117.49886 * 216.94259 * 10 8 6 16 16 C 1.46901 * 110.99925 * 236.04354 * 2 1 3 17 17 C 1.50703 * 109.47541 * 293.95801 * 16 2 1 18 18 O 1.21292 * 119.99364 * 359.97438 * 17 16 2 19 19 N 1.34775 * 120.00456 * 179.97438 * 17 16 2 20 20 C 1.37089 * 119.99958 * 180.02562 * 19 17 16 21 21 H 1.08007 * 120.00294 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99950 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00194 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47431 * 89.99544 * 24 22 20 26 26 H 1.48504 * 109.47042 * 209.99807 * 24 22 20 27 27 H 1.48498 * 109.47203 * 329.99641 * 24 22 20 28 28 H 1.09003 * 109.47011 * 59.99715 * 1 2 3 29 29 H 1.09002 * 109.47209 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47148 * 300.00325 * 1 2 3 31 31 H 1.09013 * 109.46881 * 306.04726 * 3 2 1 32 32 H 1.08999 * 109.47657 * 186.04956 * 3 2 1 33 33 H 1.08999 * 109.46624 * 60.00601 * 4 3 2 34 34 H 1.08998 * 109.47514 * 300.00317 * 4 3 2 35 35 H 1.08997 * 109.47010 * 60.00123 * 5 4 3 36 36 H 1.08998 * 109.46987 * 300.00522 * 5 4 3 37 37 H 1.09002 * 109.46787 * 276.35526 * 7 6 5 38 38 H 1.09006 * 109.47011 * 36.35068 * 7 6 5 39 39 H 1.08997 * 109.46876 * 156.35200 * 7 6 5 40 40 H 1.08999 * 109.46700 * 306.06939 * 11 10 8 41 41 H 1.09002 * 117.49443 * 359.97438 * 14 10 8 42 42 H 1.08997 * 117.49931 * 145.01954 * 14 10 8 43 43 H 1.09003 * 117.49783 * 214.97944 * 15 10 8 44 44 H 1.08998 * 117.50171 * 359.97438 * 15 10 8 45 45 H 1.09002 * 109.46855 * 53.95461 * 16 2 1 46 46 H 1.08998 * 109.47382 * 173.95502 * 16 2 1 47 47 H 0.97002 * 119.99786 * 359.97438 * 19 17 16 48 48 H 0.97005 * 120.00151 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1794 3.4860 1.3180 6 7 1.8313 4.1427 2.5804 7 6 0.5744 4.8862 2.6971 8 6 2.6674 4.0628 3.6345 9 8 3.6577 3.3655 3.5715 10 6 2.3685 4.8353 4.8935 11 6 1.1896 4.3185 5.7206 12 9 1.4982 3.0538 6.2327 13 9 0.9387 5.2009 6.7768 14 6 2.6049 6.3467 4.8679 15 6 3.5538 5.4364 5.6516 16 6 1.9954 -0.7660 -1.1376 17 6 1.6369 -2.2205 -0.9729 18 8 1.0053 -2.5833 -0.0030 19 7 2.0179 -3.1181 -1.9033 20 6 1.6912 -4.4410 -1.7536 21 1 1.1288 -4.7642 -0.8900 22 6 2.0845 -5.3665 -2.7126 23 7 2.7692 -4.9735 -3.7631 24 14 1.6400 -7.1693 -2.5084 25 1 0.3277 -7.4316 -3.1520 26 1 2.6824 -8.0117 -3.1482 27 1 1.5567 -7.4979 -1.0626 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5611 1.9273 -0.8310 32 1 3.0798 1.3443 -0.1083 33 1 2.0659 1.5015 2.1491 34 1 0.5473 2.0845 1.4265 35 1 1.7447 4.0416 0.4871 36 1 3.2636 3.4593 1.2095 37 1 0.7113 5.8947 2.3067 38 1 -0.2028 4.3780 2.1262 39 1 0.2796 4.9391 3.7452 40 1 0.3049 4.2484 5.0877 41 1 2.9770 6.7823 3.9406 42 1 1.9208 6.9728 5.4406 43 1 3.4935 5.4640 6.7396 44 1 4.5497 5.2728 5.2400 45 1 1.5611 -0.3873 -2.0628 46 1 3.0797 -0.6612 -1.1756 47 1 2.5227 -2.8279 -2.6791 48 1 3.0434 -5.6195 -4.4328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273515438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:00 Heat of formation + Delta-G solvation = -127.245622 kcal Electronic energy + Delta-G solvation = -30642.594189 eV Core-core repulsion = 25984.000095 eV Total energy + Delta-G solvation = -4658.594094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -49.46875 -47.43904 -40.69111 -38.64857 -37.40236 -36.69549 -35.94014 -33.86069 -32.19035 -31.19623 -28.57924 -27.81995 -27.39066 -26.50376 -24.91916 -23.59582 -23.15895 -22.08450 -20.75862 -19.71139 -19.10131 -18.17841 -17.91106 -17.80198 -17.56541 -16.77119 -16.33284 -15.91023 -15.57775 -15.48039 -14.90748 -14.79984 -14.58651 -14.29022 -14.23372 -14.05165 -13.79720 -13.62925 -13.56668 -13.36009 -13.32140 -13.26835 -12.78409 -12.28510 -12.13531 -12.10011 -12.02850 -11.89136 -11.66304 -11.46555 -11.25975 -11.21946 -11.15653 -10.93610 -10.89402 -10.56799 -10.36483 -10.22181 -10.18485 -9.44561 -9.11637 -8.40393 -7.94070 -7.80114 -6.38574 -3.79095 1.99109 2.39896 2.76324 3.19997 3.23421 3.28428 3.34864 3.59781 3.67537 3.93277 3.94544 4.03420 4.06491 4.27987 4.43073 4.60211 4.62998 4.75086 4.83471 4.95041 4.98533 5.05205 5.12274 5.15731 5.18427 5.27440 5.30189 5.33786 5.43081 5.49297 5.60833 5.74057 5.75073 5.94881 5.98285 6.03668 6.07900 6.29093 6.33774 6.59028 6.86467 7.32275 7.45094 7.58367 7.70526 8.10058 8.65727 9.21662 9.58266 10.10526 10.79271 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.022095 B = 0.001748 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.955029 B =16014.437155 C =16415.402670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.059 3.941 4 C -0.131 4.131 5 C 0.118 3.882 6 N -0.611 5.611 7 C 0.071 3.929 8 C 0.555 3.445 9 O -0.510 6.510 10 C -0.234 4.234 11 C 0.303 3.697 12 F -0.190 7.190 13 F -0.197 7.197 14 C -0.138 4.138 15 C -0.125 4.125 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.012 0.988 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.197 28.623 12.248 31.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.243 5.243 3 C -0.070 4.070 4 C -0.170 4.170 5 C -0.004 4.004 6 N -0.344 5.344 7 C -0.072 4.072 8 C 0.340 3.660 9 O -0.383 6.383 10 C -0.238 4.238 11 C 0.249 3.751 12 F -0.172 7.172 13 F -0.178 7.178 14 C -0.175 4.175 15 C -0.163 4.163 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.031 0.969 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.139 0.861 41 H 0.128 0.872 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.850 27.628 13.164 30.736 hybrid contribution -0.274 -0.398 -1.166 1.262 sum -3.124 27.230 11.998 29.920 Atomic orbital electron populations 1.22553 0.86948 1.04367 0.98676 1.61511 1.08582 1.11385 1.42774 1.22021 1.00346 0.88896 0.95697 1.21928 1.01294 0.94485 0.99283 1.21531 1.02009 0.93067 0.83835 1.47778 1.20828 1.53094 1.12711 1.22014 0.85803 0.96767 1.02604 1.18982 0.83223 0.80974 0.82801 1.90772 1.27839 1.38188 1.81528 1.22527 1.02351 0.99524 0.99437 1.21223 0.96809 0.73627 0.83448 1.93067 1.94587 1.40942 1.88554 1.92990 1.95057 1.69199 1.60549 1.23180 1.02711 0.88092 1.03483 1.23081 0.94566 0.98799 0.99808 1.21862 1.00701 0.94153 0.91790 1.19756 0.85381 0.86689 0.85189 1.90483 1.43884 1.80155 1.31576 1.41867 1.49534 1.07366 1.21458 1.19696 1.32810 0.82321 1.07862 0.87937 1.25259 0.96871 1.00554 0.95366 1.69614 1.38152 1.35736 1.10923 0.85857 0.77957 0.81788 0.78682 1.20479 1.20950 1.19412 0.96933 0.88693 0.92244 0.95227 0.90730 0.90256 0.91699 0.90227 0.89584 0.91795 0.90344 0.91268 0.86117 0.87239 0.86681 0.86996 0.86805 0.93550 0.89398 0.77509 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.96 60.06 0.54 0.91 16 2 N -0.52 -8.94 4.50 -244.36 -1.10 -10.03 16 3 C 0.06 0.76 4.96 -3.83 -0.02 0.74 16 4 C -0.13 -1.50 5.46 -26.73 -0.15 -1.64 16 5 C 0.12 1.04 5.40 -4.04 -0.02 1.02 16 6 N -0.61 -4.98 2.87 -181.57 -0.52 -5.50 16 7 C 0.07 0.30 10.18 59.85 0.61 0.91 16 8 C 0.55 5.85 6.87 -10.99 -0.08 5.78 16 9 O -0.51 -7.65 16.49 5.55 0.09 -7.55 16 10 C -0.23 -1.83 1.19 -155.66 -0.18 -2.02 16 11 C 0.30 2.33 4.95 37.16 0.18 2.51 16 12 F -0.19 -2.18 17.32 2.25 0.04 -2.14 16 13 F -0.20 -1.51 15.93 2.25 0.04 -1.47 16 14 C -0.14 -0.67 9.52 -26.69 -0.25 -0.92 16 15 C -0.13 -0.89 9.54 -26.69 -0.25 -1.14 16 16 C 0.05 0.85 5.45 -4.97 -0.03 0.83 16 17 C 0.44 10.75 7.47 -10.98 -0.08 10.67 16 18 O -0.58 -15.89 13.91 5.55 0.08 -15.81 16 19 N -0.57 -14.60 5.29 -10.96 -0.06 -14.66 16 20 C -0.30 -8.41 9.68 -14.94 -0.14 -8.56 16 21 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.86 13.05 55.50 0.72 -24.13 16 24 Si 0.93 21.37 29.55 -169.99 -5.02 16.34 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 1.91 5.83 -51.93 -0.30 1.61 16 30 H 0.06 0.85 6.47 -51.93 -0.34 0.52 16 31 H 0.03 0.33 8.12 -51.92 -0.42 -0.09 16 32 H 0.07 0.94 7.93 -51.93 -0.41 0.52 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.70 6.55 -51.93 -0.34 0.36 16 35 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 36 H 0.09 0.87 7.50 -51.93 -0.39 0.48 16 37 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.08 0.29 8.12 -51.93 -0.42 -0.14 16 39 H 0.07 0.23 3.97 -51.93 -0.21 0.02 16 40 H 0.12 0.60 5.56 -51.93 -0.29 0.31 16 41 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.11 0.39 7.61 -51.93 -0.39 0.00 16 43 H 0.11 0.72 7.96 -51.93 -0.41 0.30 16 44 H 0.11 0.88 8.10 -51.93 -0.42 0.46 16 45 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 46 H 0.09 1.48 7.93 -51.93 -0.41 1.07 16 47 H 0.39 9.66 7.90 -40.82 -0.32 9.33 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 399.13 15.07 6.01 6.01 Total: -1.00 -35.38 399.13 -6.82 -42.20 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.12 Total: 7.18 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 0.03 Total: 9.56 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.95 Total: -54.32 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.17 Total: -23.36 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.07 Total: -3.61 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.38 -6.82 -42.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273515438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.045 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds