Wall clock time and date at job start Wed Apr 1 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 111.00421 * 2 1 4 4 C 1.52997 * 109.47127 * 66.04206 * 3 2 1 5 5 C 1.53002 * 109.47325 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47292 * 180.02562 * 5 4 3 7 7 C 1.46507 * 119.99917 * 270.00029 * 6 5 4 8 8 C 1.34771 * 120.00361 * 90.00044 * 6 5 4 9 9 O 1.21284 * 119.99856 * 354.44687 * 8 6 5 10 10 C 1.50698 * 120.00221 * 174.71812 * 8 6 5 11 11 C 1.53003 * 115.54947 * 71.27346 * 10 8 6 12 12 F 1.39896 * 109.47014 * 66.07082 * 11 10 8 13 13 F 1.39901 * 109.47052 * 186.07149 * 11 10 8 14 14 C 1.53003 * 117.50094 * 285.60267 * 10 8 6 15 15 C 1.53002 * 117.49886 * 216.94259 * 10 8 6 16 16 C 1.46901 * 110.99925 * 236.04354 * 2 1 3 17 17 C 1.50703 * 109.47541 * 293.95801 * 16 2 1 18 18 O 1.21292 * 119.99364 * 359.97438 * 17 16 2 19 19 N 1.34775 * 120.00456 * 179.97438 * 17 16 2 20 20 C 1.37089 * 119.99958 * 180.02562 * 19 17 16 21 21 H 1.08007 * 120.00294 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99950 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00194 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47431 * 89.99544 * 24 22 20 26 26 H 1.48504 * 109.47042 * 209.99807 * 24 22 20 27 27 H 1.48498 * 109.47203 * 329.99641 * 24 22 20 28 28 H 1.09003 * 109.47011 * 59.99715 * 1 2 3 29 29 H 1.09002 * 109.47209 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47148 * 300.00325 * 1 2 3 31 31 H 1.09013 * 109.46881 * 306.04726 * 3 2 1 32 32 H 1.08999 * 109.47657 * 186.04956 * 3 2 1 33 33 H 1.08999 * 109.46624 * 60.00601 * 4 3 2 34 34 H 1.08998 * 109.47514 * 300.00317 * 4 3 2 35 35 H 1.08997 * 109.47010 * 60.00123 * 5 4 3 36 36 H 1.08998 * 109.46987 * 300.00522 * 5 4 3 37 37 H 1.09002 * 109.46787 * 276.35526 * 7 6 5 38 38 H 1.09006 * 109.47011 * 36.35068 * 7 6 5 39 39 H 1.08997 * 109.46876 * 156.35200 * 7 6 5 40 40 H 1.08999 * 109.46700 * 306.06939 * 11 10 8 41 41 H 1.09002 * 117.49443 * 359.97438 * 14 10 8 42 42 H 1.08997 * 117.49931 * 145.01954 * 14 10 8 43 43 H 1.09003 * 117.49783 * 214.97944 * 15 10 8 44 44 H 1.08998 * 117.50171 * 359.97438 * 15 10 8 45 45 H 1.09002 * 109.46855 * 53.95461 * 16 2 1 46 46 H 1.08998 * 109.47382 * 173.95502 * 16 2 1 47 47 H 0.97002 * 119.99786 * 359.97438 * 19 17 16 48 48 H 0.97005 * 120.00151 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1794 3.4860 1.3180 6 7 1.8313 4.1427 2.5804 7 6 0.5744 4.8862 2.6971 8 6 2.6674 4.0628 3.6345 9 8 3.6577 3.3655 3.5715 10 6 2.3685 4.8353 4.8935 11 6 1.1896 4.3185 5.7206 12 9 1.4982 3.0538 6.2327 13 9 0.9387 5.2009 6.7768 14 6 2.6049 6.3467 4.8679 15 6 3.5538 5.4364 5.6516 16 6 1.9954 -0.7660 -1.1376 17 6 1.6369 -2.2205 -0.9729 18 8 1.0053 -2.5833 -0.0030 19 7 2.0179 -3.1181 -1.9033 20 6 1.6912 -4.4410 -1.7536 21 1 1.1288 -4.7642 -0.8900 22 6 2.0845 -5.3665 -2.7126 23 7 2.7692 -4.9735 -3.7631 24 14 1.6400 -7.1693 -2.5084 25 1 0.3277 -7.4316 -3.1520 26 1 2.6824 -8.0117 -3.1482 27 1 1.5567 -7.4979 -1.0626 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5611 1.9273 -0.8310 32 1 3.0798 1.3443 -0.1083 33 1 2.0659 1.5015 2.1491 34 1 0.5473 2.0845 1.4265 35 1 1.7447 4.0416 0.4871 36 1 3.2636 3.4593 1.2095 37 1 0.7113 5.8947 2.3067 38 1 -0.2028 4.3780 2.1262 39 1 0.2796 4.9391 3.7452 40 1 0.3049 4.2484 5.0877 41 1 2.9770 6.7823 3.9406 42 1 1.9208 6.9728 5.4406 43 1 3.4935 5.4640 6.7396 44 1 4.5497 5.2728 5.2400 45 1 1.5611 -0.3873 -2.0628 46 1 3.0797 -0.6612 -1.1756 47 1 2.5227 -2.8279 -2.6791 48 1 3.0434 -5.6195 -4.4328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273515438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:52 Heat of formation + Delta-G solvation = -152.705094 kcal Electronic energy + Delta-G solvation = -30643.698194 eV Core-core repulsion = 25984.000095 eV Total energy + Delta-G solvation = -4659.698100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.12218 -48.12509 -41.40233 -40.38503 -38.40657 -37.63536 -36.85415 -35.88296 -33.33940 -33.08421 -29.58638 -28.95348 -27.97296 -27.46757 -26.63861 -24.77877 -23.61449 -22.92151 -21.82260 -20.99150 -20.33415 -19.85479 -18.81362 -18.52319 -18.20579 -17.89779 -17.37613 -16.99972 -16.63338 -16.58237 -16.44736 -15.92739 -15.81294 -15.57401 -15.25497 -15.04299 -14.83868 -14.68217 -14.58644 -14.44492 -14.14904 -13.89763 -13.75968 -13.49387 -13.36489 -13.11543 -12.96287 -12.89345 -12.75103 -12.57791 -12.56725 -12.49125 -12.40118 -12.33899 -12.12869 -11.80261 -11.52584 -11.46315 -11.45901 -11.01026 -10.29375 -10.00369 -9.77484 -9.16389 -8.46833 -5.95391 1.26067 1.37072 1.40558 1.53599 1.78170 2.05270 2.22601 2.28288 2.69468 2.80671 3.05475 3.12669 3.19817 3.38541 3.43048 3.57335 3.89334 3.92371 4.05738 4.09822 4.15637 4.27332 4.35963 4.38794 4.43499 4.50646 4.54107 4.57950 4.59204 4.61746 4.67609 4.70525 4.80533 4.82874 4.92340 5.03891 5.09724 5.16055 5.28289 5.40701 5.49041 5.89511 6.08904 6.21868 6.26746 6.60980 6.98275 7.12982 7.56434 8.12868 8.70596 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.022095 B = 0.001748 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.955029 B =16014.437155 C =16415.402670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.547 5.547 3 C 0.062 3.938 4 C -0.120 4.120 5 C 0.122 3.878 6 N -0.605 5.605 7 C 0.061 3.939 8 C 0.549 3.451 9 O -0.569 6.569 10 C -0.247 4.247 11 C 0.299 3.701 12 F -0.218 7.218 13 F -0.195 7.195 14 C -0.100 4.100 15 C -0.144 4.144 16 C 0.059 3.941 17 C 0.440 3.560 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.269 1.269 26 H -0.270 1.270 27 H -0.275 1.275 28 H 0.035 0.965 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.153 0.847 41 H 0.122 0.878 42 H 0.138 0.862 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.418 31.202 11.304 33.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.272 5.272 3 C -0.066 4.066 4 C -0.159 4.159 5 C -0.001 4.001 6 N -0.337 5.337 7 C -0.080 4.080 8 C 0.336 3.664 9 O -0.448 6.448 10 C -0.251 4.251 11 C 0.245 3.755 12 F -0.199 7.199 13 F -0.176 7.176 14 C -0.137 4.137 15 C -0.182 4.182 16 C -0.072 4.072 17 C 0.227 3.773 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.095 0.905 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.200 1.200 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.135 0.865 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.169 0.831 41 H 0.140 0.860 42 H 0.156 0.844 43 H 0.133 0.867 44 H 0.117 0.883 45 H 0.090 0.910 46 H 0.123 0.877 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.100 30.263 12.197 32.885 hybrid contribution 0.087 -1.131 -0.845 1.414 sum -4.014 29.132 11.352 31.522 Atomic orbital electron populations 1.22406 0.86712 1.02056 1.00670 1.61448 1.09116 1.14046 1.42595 1.22081 1.00396 0.86772 0.97340 1.21807 1.01610 0.95496 0.97002 1.21484 1.01198 0.92034 0.85368 1.47899 1.21599 1.52388 1.11785 1.22343 0.84073 0.97728 1.03809 1.19462 0.82679 0.80393 0.83916 1.90740 1.30482 1.40818 1.82742 1.22455 1.02815 1.01381 0.98494 1.21597 0.97918 0.72399 0.83549 1.93013 1.94884 1.43016 1.89016 1.92988 1.95030 1.68956 1.60637 1.23326 1.00878 0.86109 1.03380 1.23119 0.94183 1.00660 1.00193 1.21722 1.01896 0.90138 0.93462 1.20840 0.83696 0.88907 0.83852 1.90461 1.45249 1.81499 1.33001 1.41936 1.50099 1.07052 1.22152 1.19641 1.34400 0.84107 1.08025 0.90469 1.26044 0.96286 1.04352 0.94720 1.69672 1.38088 1.37192 1.11182 0.84925 0.78311 0.76774 0.78297 1.19459 1.19499 1.19999 0.94626 0.93101 0.90427 0.92172 0.90749 0.94486 0.90659 0.86486 0.91363 0.89192 0.89054 0.90288 0.83060 0.86009 0.84403 0.86701 0.88281 0.91033 0.87697 0.77007 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 8.96 127.69 1.14 2.08 16 2 N -0.55 -18.37 4.50 -927.03 -4.17 -22.54 16 3 C 0.06 1.46 4.96 86.30 0.43 1.89 16 4 C -0.12 -2.59 5.46 30.59 0.17 -2.42 16 5 C 0.12 1.90 5.40 86.38 0.47 2.37 16 6 N -0.61 -8.66 2.87 -846.75 -2.43 -11.09 16 7 C 0.06 0.29 10.18 127.77 1.30 1.59 16 8 C 0.55 11.41 6.87 87.66 0.60 12.01 16 9 O -0.57 -18.02 16.49 -3.04 -0.05 -18.07 16 10 C -0.25 -3.60 1.19 -52.93 -0.06 -3.67 16 11 C 0.30 4.22 4.95 71.98 0.36 4.57 16 12 F -0.22 -5.09 17.32 44.97 0.78 -4.31 16 13 F -0.19 -2.63 15.93 44.97 0.72 -1.91 16 14 C -0.10 -0.71 9.52 30.62 0.29 -0.42 16 15 C -0.14 -2.00 9.54 30.62 0.29 -1.70 16 16 C 0.06 2.12 5.45 85.56 0.47 2.59 16 17 C 0.44 21.71 7.47 87.66 0.66 22.37 16 18 O -0.62 -35.27 13.91 -3.07 -0.04 -35.31 16 19 N -0.57 -30.36 5.29 -306.98 -1.62 -31.98 16 20 C -0.33 -19.33 9.68 84.04 0.81 -18.52 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.92 -50.45 13.05 21.66 0.28 -50.17 16 24 Si 0.99 43.88 29.55 68.60 2.03 45.91 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 2.09 5.83 -2.39 -0.01 2.07 16 30 H 0.08 2.12 6.47 -2.39 -0.02 2.11 16 31 H 0.06 1.09 8.12 -2.38 -0.02 1.08 16 32 H 0.07 1.76 7.93 -2.39 -0.02 1.74 16 33 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.44 6.55 -2.39 -0.02 1.42 16 35 H 0.12 0.99 8.07 -2.39 -0.02 0.97 16 36 H 0.07 1.34 7.50 -2.39 -0.02 1.32 16 37 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.09 0.26 8.12 -2.38 -0.02 0.24 16 39 H 0.08 0.22 3.97 -2.39 -0.01 0.21 16 40 H 0.15 1.13 5.56 -2.39 -0.01 1.11 16 41 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.14 0.40 7.61 -2.39 -0.02 0.38 16 43 H 0.11 1.46 7.96 -2.39 -0.02 1.44 16 44 H 0.10 1.65 8.10 -2.39 -0.02 1.63 16 45 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 46 H 0.10 3.41 7.93 -2.39 -0.02 3.39 16 47 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 48 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 Total: -1.00 -81.87 399.13 3.14 -78.73 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.26 Total: 28.33 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: 7.39 Total: 22.41 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -7.94 Total: -115.78 kcal Atomic # 8 Polarization: -53.29 SS G_CDS: -0.09 Total: -53.38 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 1.49 Total: -6.22 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -81.87 3.14 -78.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273515438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.972 kcal (2) G-P(sol) polarization free energy of solvation -81.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds