Wall clock time and date at job start Wed Apr 1 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35496 * 126.97985 * 2 1 4 4 N 1.30522 * 107.30788 * 180.22808 * 3 2 1 5 5 N 1.28598 * 109.67153 * 359.77617 * 4 3 2 6 6 C 1.30521 * 109.67313 * 0.02562 * 5 4 3 7 7 C 1.50700 * 126.34825 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47040 * 90.01996 * 7 6 5 9 9 C 1.33962 * 122.78335 * 89.97680 * 8 7 6 10 10 O 1.21225 * 125.41231 * 0.02562 * 9 8 7 11 11 C 1.51451 * 109.17499 * 180.02562 * 9 8 7 12 12 C 1.53732 * 103.36050 * 359.97438 * 11 9 8 13 13 C 1.52534 * 110.31086 * 241.32404 * 12 11 9 14 14 C 1.53231 * 109.18930 * 181.29855 * 13 12 11 15 15 C 1.53036 * 109.20265 * 56.76911 * 14 13 12 16 16 N 1.46851 * 109.63598 * 300.36414 * 15 14 13 17 17 C 1.46904 * 110.99767 * 186.22653 * 16 15 14 18 18 C 1.50701 * 109.47195 * 66.05024 * 17 16 15 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99694 * 180.27796 * 18 17 16 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 17 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 17 23 23 H 1.48494 * 109.47230 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47301 * 119.99669 * 22 20 18 25 25 H 1.48498 * 109.47430 * 239.99516 * 22 20 18 26 26 C 1.46954 * 111.14295 * 62.17219 * 16 15 14 27 27 C 1.34045 * 122.78667 * 269.97926 * 8 7 6 28 28 O 1.21228 * 125.50006 * 359.97438 * 27 8 7 29 29 H 1.09004 * 109.46613 * 270.15199 * 1 2 3 30 30 H 1.08998 * 109.47245 * 30.14672 * 1 2 3 31 31 H 1.08998 * 109.47669 * 150.15625 * 1 2 3 32 32 H 1.07999 * 126.35233 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.47124 * 330.02720 * 7 6 5 34 34 H 1.08996 * 109.47610 * 210.01939 * 7 6 5 35 35 H 1.09002 * 110.64084 * 241.53756 * 11 9 8 36 36 H 1.09003 * 110.64381 * 118.46975 * 11 9 8 37 37 H 1.09004 * 109.51139 * 61.39425 * 13 12 11 38 38 H 1.08993 * 109.56844 * 301.24494 * 13 12 11 39 39 H 1.09002 * 109.51977 * 296.84575 * 14 13 12 40 40 H 1.09010 * 109.51291 * 176.68254 * 14 13 12 41 41 H 1.09002 * 109.44157 * 180.31694 * 15 14 13 42 42 H 1.09000 * 109.41772 * 60.40063 * 15 14 13 43 43 H 1.09000 * 109.47038 * 306.04167 * 17 16 15 44 44 H 1.09007 * 109.46566 * 186.04699 * 17 16 15 45 45 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.45176 * 59.25420 * 26 16 15 47 47 H 1.08997 * 109.45682 * 179.19102 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5090 0.6430 -0.0050 5 7 3.5090 -0.6430 -0.0033 6 6 2.2800 -1.0824 0.0022 7 6 1.8476 -2.5260 0.0053 8 7 1.7128 -2.9924 1.3875 9 6 0.5673 -2.8998 2.0759 10 8 -0.4694 -2.4335 1.6549 11 6 0.7734 -3.4703 3.4636 12 6 2.2464 -3.9101 3.4518 13 6 2.3516 -5.4146 3.6801 14 6 3.8293 -5.8195 3.6958 15 6 4.5605 -5.0144 4.7725 16 7 4.4403 -3.5798 4.4827 17 6 5.2536 -2.7850 5.4128 18 6 6.7135 -3.0769 5.1791 19 1 7.0077 -3.7826 4.4163 20 6 7.6731 -2.4477 5.9434 21 7 7.3148 -1.5887 6.8725 22 14 9.4824 -2.8154 5.6591 23 1 9.6194 -3.8100 4.5650 24 1 10.1885 -1.5644 5.2826 25 1 10.0776 -3.3643 6.9039 26 6 3.0356 -3.1491 4.5111 27 6 2.7254 -3.5473 2.0684 28 8 3.8454 -3.7284 1.6411 29 1 -0.3633 0.0027 1.0277 30 1 -0.3633 0.8886 -0.5161 31 1 -0.3634 -0.8913 -0.5114 32 1 1.9702 2.1170 -0.0004 33 1 2.5940 -3.1299 -0.5107 34 1 0.8888 -2.6192 -0.5047 35 1 0.1186 -4.3260 3.6284 36 1 0.6064 -2.7055 4.2222 37 1 1.8382 -5.9417 2.8759 38 1 1.8933 -5.6719 4.6349 39 1 4.2738 -5.6133 2.7221 40 1 3.9129 -6.8837 3.9172 41 1 5.6136 -5.2955 4.7832 42 1 4.1184 -5.2262 5.7461 43 1 4.9906 -3.0445 6.4383 44 1 5.0639 -1.7246 5.2462 45 1 7.9899 -1.1464 7.4104 46 1 2.6132 -3.3534 5.4949 47 1 2.9795 -2.0799 4.3072 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:53 Heat of formation + Delta-G solvation = 35.312930 kcal Electronic energy + Delta-G solvation = -32332.944837 eV Core-core repulsion = 28132.088997 eV Total energy + Delta-G solvation = -4200.855840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -43.27876 -42.16008 -38.97395 -37.69737 -35.86183 -35.26486 -34.46351 -32.76412 -31.76642 -31.03429 -28.33421 -27.85464 -27.06768 -26.70118 -24.33992 -23.74226 -22.54300 -21.99321 -21.80802 -20.81916 -20.34476 -18.55778 -17.54121 -17.41886 -16.57398 -16.39198 -16.23846 -16.02394 -15.29069 -15.20505 -14.91351 -14.68975 -14.49372 -14.31603 -13.98976 -13.71309 -13.63625 -13.53571 -13.43331 -12.96241 -12.79930 -12.56699 -12.42569 -12.07625 -12.06107 -11.76033 -11.56206 -11.22817 -10.82733 -10.75726 -10.65703 -10.57303 -10.43037 -10.33114 -10.20444 -10.06067 -9.97559 -9.67951 -9.64818 -9.37011 -9.10190 -8.36649 -7.18789 -5.96015 -3.95995 1.44987 1.53657 2.25066 2.42648 2.74351 2.96354 3.38129 3.45784 3.51987 3.89537 4.03264 4.10684 4.28900 4.34979 4.41928 4.50704 4.57535 4.63372 4.77058 4.92819 5.01035 5.15144 5.16478 5.22256 5.28236 5.32720 5.35348 5.40568 5.49826 5.61841 5.66130 5.74913 5.92285 5.97699 6.00820 6.09482 6.15063 6.22349 6.64491 6.69810 6.76905 6.78900 7.22825 7.30576 7.34731 7.86580 7.90320 8.12885 8.23319 8.58528 8.66347 9.12027 9.68129 11.15210 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.003891 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.550732 B = 7193.824547 C = 8714.047829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.470 5.470 3 C 0.151 3.849 4 N -0.291 5.291 5 N -0.254 5.254 6 C 0.142 3.858 7 C 0.192 3.808 8 N -0.576 5.576 9 C 0.533 3.467 10 O -0.499 6.499 11 C -0.151 4.151 12 C -0.087 4.087 13 C -0.096 4.096 14 C -0.127 4.127 15 C 0.067 3.933 16 N -0.524 5.524 17 C 0.196 3.804 18 C -0.500 4.500 19 H 0.066 0.934 20 C 0.055 3.945 21 N -0.901 5.901 22 Si 0.897 3.103 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.286 1.286 26 C 0.076 3.924 27 C 0.535 3.465 28 O -0.413 6.413 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.220 0.780 33 H 0.128 0.872 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.018 0.982 43 H -0.009 1.009 44 H 0.028 0.972 45 H 0.260 0.740 46 H 0.041 0.959 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.538 -2.805 -11.490 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.161 5.161 3 C -0.136 4.136 4 N -0.131 5.131 5 N -0.096 5.096 6 C -0.125 4.125 7 C 0.068 3.932 8 N -0.321 5.321 9 C 0.323 3.677 10 O -0.373 6.373 11 C -0.191 4.191 12 C -0.091 4.091 13 C -0.134 4.134 14 C -0.165 4.165 15 C -0.061 4.061 16 N -0.249 5.249 17 C 0.072 3.928 18 C -0.539 4.539 19 H 0.084 0.916 20 C -0.146 4.146 21 N -0.541 5.541 22 Si 0.725 3.275 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.212 1.212 26 C -0.053 4.053 27 C 0.321 3.679 28 O -0.276 6.276 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.236 0.764 33 H 0.146 0.854 34 H 0.126 0.874 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.036 0.964 43 H 0.009 0.991 44 H 0.046 0.954 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.651 -2.462 -12.328 23.328 hybrid contribution -0.882 0.225 0.812 1.220 sum -20.533 -2.238 -11.516 23.648 Atomic orbital electron populations 1.22162 0.74866 1.04861 1.04842 1.46252 1.09386 1.06634 1.53822 1.26542 0.87300 0.94926 1.04800 1.74385 1.17870 1.03217 1.17666 1.74456 1.16456 1.03071 1.15608 1.24922 0.87824 0.92201 1.07585 1.19769 1.04287 0.86080 0.83031 1.47076 1.14288 1.56191 1.14563 1.20940 0.82030 0.76380 0.88348 1.90689 1.28103 1.43772 1.74699 1.22625 0.97376 1.04153 0.94954 1.21189 0.93891 0.99586 0.94409 1.21455 0.99135 0.90672 1.02112 1.21792 0.93600 0.98778 1.02294 1.21922 1.01456 0.88478 0.94293 1.62056 1.04698 1.03343 1.54780 1.19700 0.92359 0.92659 0.88130 1.21180 0.90177 1.24682 1.17870 0.91608 1.24967 0.99257 0.95196 0.95186 1.69964 1.33547 1.28370 1.22258 0.86451 0.84945 0.78266 0.77864 1.19536 1.21020 1.21243 1.21802 0.91134 0.98094 0.94306 1.20512 0.83884 0.76237 0.87218 1.90830 1.17284 1.47273 1.72204 0.89532 0.89160 0.88903 0.76401 0.85400 0.87374 0.85999 0.86140 0.91860 0.90522 0.89805 0.91850 0.89486 0.96355 0.99121 0.95418 0.93089 0.94105 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 10.09 59.84 0.60 1.10 16 2 N -0.47 -5.11 3.15 -122.69 -0.39 -5.50 16 3 C 0.15 1.79 12.74 -89.94 -1.15 0.64 16 4 N -0.29 -4.97 12.21 29.69 0.36 -4.61 16 5 N -0.25 -4.61 12.21 32.80 0.40 -4.21 16 6 C 0.14 1.96 7.61 -154.99 -1.18 0.78 16 7 C 0.19 2.15 5.91 -5.19 -0.03 2.12 16 8 N -0.58 -7.08 2.54 -116.70 -0.30 -7.38 16 9 C 0.53 5.77 8.09 -10.98 -0.09 5.68 16 10 O -0.50 -5.60 15.75 5.60 0.09 -5.51 16 11 C -0.15 -1.41 6.30 -27.13 -0.17 -1.58 16 12 C -0.09 -1.13 0.69 -155.73 -0.11 -1.24 16 13 C -0.10 -1.11 4.60 -26.85 -0.12 -1.23 16 14 C -0.13 -1.87 5.81 -26.59 -0.15 -2.02 16 15 C 0.07 1.26 5.28 -3.83 -0.02 1.24 16 16 N -0.52 -11.25 4.01 -236.39 -0.95 -12.20 16 17 C 0.20 5.18 4.72 -4.97 -0.02 5.15 16 18 C -0.50 -14.46 8.43 -34.44 -0.29 -14.75 16 19 H 0.07 1.92 7.14 -52.49 -0.37 1.54 16 20 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 22 Si 0.90 22.50 29.54 -169.99 -5.02 17.48 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 C 0.08 1.29 4.00 -4.07 -0.02 1.27 16 27 C 0.54 8.11 6.52 -11.25 -0.07 8.04 16 28 O -0.41 -7.95 15.01 5.60 0.08 -7.86 16 29 H 0.09 0.64 7.54 -51.93 -0.39 0.25 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.55 7.06 -51.93 -0.37 0.19 16 32 H 0.22 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.13 1.43 7.84 -51.93 -0.41 1.02 16 34 H 0.11 0.86 6.90 -51.93 -0.36 0.50 16 35 H 0.12 0.81 7.72 -51.93 -0.40 0.41 16 36 H 0.12 1.03 7.72 -51.93 -0.40 0.62 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.42 6.26 -51.93 -0.32 1.09 16 40 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 41 H 0.09 1.84 6.71 -51.93 -0.35 1.50 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 44 H 0.03 0.80 8.00 -51.93 -0.42 0.38 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 LS Contribution 379.51 15.07 5.72 5.72 Total: -1.00 -38.01 379.51 -8.90 -46.91 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -6.72 Total: -2.90 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -2.92 Total: 6.71 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.13 Total: -60.55 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.17 Total: -13.38 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.01 -8.90 -46.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.226 kcal (2) G-P(sol) polarization free energy of solvation -38.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds