Wall clock time and date at job start Wed Apr 1 2020 05:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35496 * 126.97985 * 2 1 4 4 N 1.30522 * 107.30788 * 180.22808 * 3 2 1 5 5 N 1.28598 * 109.67153 * 359.77617 * 4 3 2 6 6 C 1.30521 * 109.67313 * 0.02562 * 5 4 3 7 7 C 1.50700 * 126.34825 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47040 * 90.01996 * 7 6 5 9 9 C 1.33962 * 122.78335 * 89.97680 * 8 7 6 10 10 O 1.21225 * 125.41231 * 0.02562 * 9 8 7 11 11 C 1.51451 * 109.17499 * 180.02562 * 9 8 7 12 12 C 1.53732 * 103.36050 * 359.97438 * 11 9 8 13 13 C 1.52534 * 110.31086 * 241.32404 * 12 11 9 14 14 C 1.53231 * 109.18930 * 181.29855 * 13 12 11 15 15 C 1.53036 * 109.20265 * 56.76911 * 14 13 12 16 16 N 1.46851 * 109.63598 * 300.36414 * 15 14 13 17 17 C 1.46904 * 110.99767 * 186.22653 * 16 15 14 18 18 C 1.50701 * 109.47195 * 66.05024 * 17 16 15 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99694 * 180.27796 * 18 17 16 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 17 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 17 23 23 H 1.48494 * 109.47230 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47301 * 119.99669 * 22 20 18 25 25 H 1.48498 * 109.47430 * 239.99516 * 22 20 18 26 26 C 1.46954 * 111.14295 * 62.17219 * 16 15 14 27 27 C 1.34045 * 122.78667 * 269.97926 * 8 7 6 28 28 O 1.21228 * 125.50006 * 359.97438 * 27 8 7 29 29 H 1.09004 * 109.46613 * 270.15199 * 1 2 3 30 30 H 1.08998 * 109.47245 * 30.14672 * 1 2 3 31 31 H 1.08998 * 109.47669 * 150.15625 * 1 2 3 32 32 H 1.07999 * 126.35233 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.47124 * 330.02720 * 7 6 5 34 34 H 1.08996 * 109.47610 * 210.01939 * 7 6 5 35 35 H 1.09002 * 110.64084 * 241.53756 * 11 9 8 36 36 H 1.09003 * 110.64381 * 118.46975 * 11 9 8 37 37 H 1.09004 * 109.51139 * 61.39425 * 13 12 11 38 38 H 1.08993 * 109.56844 * 301.24494 * 13 12 11 39 39 H 1.09002 * 109.51977 * 296.84575 * 14 13 12 40 40 H 1.09010 * 109.51291 * 176.68254 * 14 13 12 41 41 H 1.09002 * 109.44157 * 180.31694 * 15 14 13 42 42 H 1.09000 * 109.41772 * 60.40063 * 15 14 13 43 43 H 1.09000 * 109.47038 * 306.04167 * 17 16 15 44 44 H 1.09007 * 109.46566 * 186.04699 * 17 16 15 45 45 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.45176 * 59.25420 * 26 16 15 47 47 H 1.08997 * 109.45682 * 179.19102 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5090 0.6430 -0.0050 5 7 3.5090 -0.6430 -0.0033 6 6 2.2800 -1.0824 0.0022 7 6 1.8476 -2.5260 0.0053 8 7 1.7128 -2.9924 1.3875 9 6 0.5673 -2.8998 2.0759 10 8 -0.4694 -2.4335 1.6549 11 6 0.7734 -3.4703 3.4636 12 6 2.2464 -3.9101 3.4518 13 6 2.3516 -5.4146 3.6801 14 6 3.8293 -5.8195 3.6958 15 6 4.5605 -5.0144 4.7725 16 7 4.4403 -3.5798 4.4827 17 6 5.2536 -2.7850 5.4128 18 6 6.7135 -3.0769 5.1791 19 1 7.0077 -3.7826 4.4163 20 6 7.6731 -2.4477 5.9434 21 7 7.3148 -1.5887 6.8725 22 14 9.4824 -2.8154 5.6591 23 1 9.6194 -3.8100 4.5650 24 1 10.1885 -1.5644 5.2826 25 1 10.0776 -3.3643 6.9039 26 6 3.0356 -3.1491 4.5111 27 6 2.7254 -3.5473 2.0684 28 8 3.8454 -3.7284 1.6411 29 1 -0.3633 0.0027 1.0277 30 1 -0.3633 0.8886 -0.5161 31 1 -0.3634 -0.8913 -0.5114 32 1 1.9702 2.1170 -0.0004 33 1 2.5940 -3.1299 -0.5107 34 1 0.8888 -2.6192 -0.5047 35 1 0.1186 -4.3260 3.6284 36 1 0.6064 -2.7055 4.2222 37 1 1.8382 -5.9417 2.8759 38 1 1.8933 -5.6719 4.6349 39 1 4.2738 -5.6133 2.7221 40 1 3.9129 -6.8837 3.9172 41 1 5.6136 -5.2955 4.7832 42 1 4.1184 -5.2262 5.7461 43 1 4.9906 -3.0445 6.4383 44 1 5.0639 -1.7246 5.2462 45 1 7.9899 -1.1464 7.4104 46 1 2.6132 -3.3534 5.4949 47 1 2.9795 -2.0799 4.3072 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:52 Heat of formation + Delta-G solvation = 8.664487 kcal Electronic energy + Delta-G solvation = -32334.100400 eV Core-core repulsion = 28132.088997 eV Total energy + Delta-G solvation = -4202.011403 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.27452 -43.17987 -40.07996 -39.00138 -36.93773 -36.26726 -35.81002 -34.51057 -33.26904 -32.13195 -29.64551 -28.83468 -28.48100 -27.70578 -25.76808 -25.19214 -23.56942 -23.41896 -22.74959 -22.27008 -21.47434 -19.65506 -18.60719 -18.43663 -18.26133 -17.49260 -17.31333 -17.15578 -16.85032 -16.17265 -16.12010 -16.00013 -15.75500 -15.53729 -15.26119 -15.08675 -14.81671 -14.46189 -14.35026 -14.16873 -13.91460 -13.71280 -13.49171 -13.43331 -13.38873 -13.15953 -12.87818 -12.68636 -12.65269 -12.49712 -12.16117 -11.96094 -11.77935 -11.47284 -11.43418 -11.28964 -11.21341 -11.08783 -10.97805 -10.73996 -10.62968 -10.46513 -8.90004 -8.22702 -6.31329 0.52361 0.56731 1.35596 1.38229 1.38410 1.50472 1.51646 1.75970 1.91188 2.38256 2.95775 3.07500 3.10046 3.15819 3.30658 3.51701 3.59480 3.66060 3.79590 3.82134 4.01116 4.12693 4.22936 4.29545 4.32217 4.42319 4.43969 4.46868 4.56545 4.62208 4.66347 4.72934 4.78902 4.82732 4.88598 4.93068 5.04059 5.05124 5.15463 5.20713 5.34881 5.54224 5.64017 5.75457 5.84599 6.05353 6.31519 6.39017 6.66935 6.82877 6.85147 7.37974 7.62703 8.88390 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.003891 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.550732 B = 7193.824547 C = 8714.047829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.463 5.463 3 C 0.169 3.831 4 N -0.355 5.355 5 N -0.322 5.322 6 C 0.143 3.857 7 C 0.190 3.810 8 N -0.575 5.575 9 C 0.535 3.465 10 O -0.495 6.495 11 C -0.137 4.137 12 C -0.083 4.083 13 C -0.091 4.091 14 C -0.120 4.120 15 C 0.067 3.933 16 N -0.543 5.543 17 C 0.214 3.786 18 C -0.518 4.518 19 H 0.055 0.945 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.270 1.270 26 C 0.075 3.925 27 C 0.532 3.468 28 O -0.467 6.467 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.266 0.734 33 H 0.119 0.881 34 H 0.146 0.854 35 H 0.166 0.834 36 H 0.134 0.866 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.028 0.972 43 H -0.029 1.029 44 H -0.010 1.010 45 H 0.264 0.736 46 H 0.060 0.940 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.140 -3.940 -11.779 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.154 5.154 3 C -0.119 4.119 4 N -0.194 5.194 5 N -0.163 5.163 6 C -0.127 4.127 7 C 0.066 3.934 8 N -0.320 5.320 9 C 0.326 3.674 10 O -0.369 6.369 11 C -0.176 4.176 12 C -0.087 4.087 13 C -0.128 4.128 14 C -0.158 4.158 15 C -0.061 4.061 16 N -0.267 5.267 17 C 0.088 3.912 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.195 4.195 21 N -0.574 5.574 22 Si 0.789 3.211 23 H -0.193 1.193 24 H -0.207 1.207 25 H -0.195 1.195 26 C -0.054 4.054 27 C 0.320 3.680 28 O -0.334 6.334 29 H 0.101 0.899 30 H 0.144 0.856 31 H 0.122 0.878 32 H 0.281 0.719 33 H 0.137 0.863 34 H 0.164 0.836 35 H 0.184 0.816 36 H 0.152 0.848 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.046 0.954 43 H -0.011 1.011 44 H 0.009 0.991 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -23.326 -3.602 -12.622 26.766 hybrid contribution 0.135 0.660 0.876 1.105 sum -23.191 -2.942 -11.746 26.162 Atomic orbital electron populations 1.22505 0.71964 1.07270 1.05284 1.46485 1.10859 1.05418 1.52601 1.27361 0.86118 0.96754 1.01716 1.74231 1.21149 1.03327 1.20714 1.74317 1.19489 1.04057 1.18401 1.25244 0.87366 0.93732 1.06374 1.19993 1.05896 0.84544 0.82937 1.47064 1.14238 1.55732 1.14951 1.21175 0.81401 0.76140 0.88669 1.90701 1.27789 1.43602 1.74783 1.22704 0.94738 1.06053 0.94084 1.21171 0.95630 1.00427 0.91425 1.21541 0.96854 0.89294 1.05106 1.21708 0.95492 0.99559 0.98992 1.21925 1.00239 0.87335 0.96568 1.61887 1.07224 1.04358 1.53241 1.19266 0.92493 0.91343 0.88104 1.21447 0.91927 1.24606 1.17683 0.92715 1.25843 1.03946 0.94856 0.94806 1.70070 1.35177 1.29159 1.23038 0.85409 0.79255 0.78126 0.78320 1.19250 1.20694 1.19534 1.21848 0.89098 0.97529 0.96913 1.20944 0.83500 0.75421 0.88172 1.90812 1.19554 1.49608 1.73459 0.89877 0.85580 0.87846 0.71864 0.86256 0.83624 0.81609 0.84841 0.88457 0.87439 0.92465 0.88997 0.93125 0.95423 1.01120 0.99145 0.92694 0.92178 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 10.09 127.77 1.29 1.98 16 2 N -0.46 -9.37 3.15 -542.08 -1.71 -11.08 16 3 C 0.17 3.84 12.74 180.11 2.30 6.14 16 4 N -0.36 -12.67 12.21 -59.99 -0.73 -13.40 16 5 N -0.32 -12.35 12.21 -50.15 -0.61 -12.97 16 6 C 0.14 3.95 7.61 137.98 1.05 5.00 16 7 C 0.19 4.10 5.91 85.63 0.51 4.60 16 8 N -0.57 -13.31 2.54 -760.81 -1.94 -15.25 16 9 C 0.54 9.76 8.09 88.02 0.71 10.48 16 10 O -0.50 -9.07 15.75 -2.86 -0.05 -9.12 16 11 C -0.14 -1.96 6.30 30.33 0.19 -1.77 16 12 C -0.08 -1.98 0.69 -52.98 -0.04 -2.01 16 13 C -0.09 -1.75 4.60 30.52 0.14 -1.61 16 14 C -0.12 -3.39 5.81 30.68 0.18 -3.21 16 15 C 0.07 2.59 5.28 86.32 0.46 3.05 16 16 N -0.54 -24.37 4.01 -901.80 -3.62 -27.99 16 17 C 0.21 12.04 4.72 85.56 0.40 12.44 16 18 C -0.52 -31.58 8.43 25.60 0.22 -31.36 16 19 H 0.05 3.38 7.14 -2.91 -0.02 3.36 16 20 C 0.00 0.20 5.46 84.65 0.46 0.66 16 21 N -0.93 -58.64 13.29 21.45 0.28 -58.36 16 22 Si 0.96 47.53 29.54 68.60 2.03 49.55 16 23 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 26 C 0.07 2.54 4.00 86.11 0.34 2.89 16 27 C 0.53 15.99 6.52 87.81 0.57 16.56 16 28 O -0.47 -18.90 15.01 -2.87 -0.04 -18.95 16 29 H 0.08 0.94 7.54 -2.39 -0.02 0.93 16 30 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.10 0.83 7.06 -2.39 -0.02 0.82 16 32 H 0.27 2.92 8.06 -2.91 -0.02 2.89 16 33 H 0.12 2.76 7.84 -2.39 -0.02 2.74 16 34 H 0.15 1.93 6.90 -2.39 -0.02 1.91 16 35 H 0.17 1.04 7.72 -2.39 -0.02 1.03 16 36 H 0.13 1.70 7.72 -2.39 -0.02 1.68 16 37 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 1.96 6.26 -2.39 -0.01 1.95 16 40 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.05 2.27 6.71 -2.39 -0.02 2.25 16 42 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 43 H -0.03 -1.69 8.12 -2.39 -0.02 -1.71 16 44 H -0.01 -0.60 8.00 -2.38 -0.02 -0.62 16 45 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.05 1.72 8.03 -2.39 -0.02 1.70 16 Total: -1.00 -92.53 379.51 3.39 -89.14 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 0.99 Total: 4.57 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: 8.78 Total: 23.84 kcal Atomic # 7 Polarization: -130.72 SS G_CDS: -8.32 Total: -139.04 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.09 Total: -28.06 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.55 kcal Total: -92.53 3.39 -89.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.805 kcal (2) G-P(sol) polarization free energy of solvation -92.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds