Wall clock time and date at job start Wed Apr 1 2020 05:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34489 * 126.47053 * 2 1 4 4 N 1.30858 * 109.16328 * 179.70876 * 3 2 1 5 5 C 1.33319 * 109.68353 * 0.26523 * 4 3 2 6 6 C 1.36668 * 107.78571 * 0.02562 * 5 4 3 7 7 C 1.46766 * 126.84426 * 180.02562 * 6 5 4 8 8 O 1.21683 * 119.99878 * 174.99324 * 7 6 5 9 9 N 1.34772 * 120.00060 * 354.99403 * 7 6 5 10 10 C 1.46500 * 120.00445 * 185.08607 * 9 7 6 11 11 C 1.52990 * 109.47565 * 180.02562 * 10 9 7 12 12 H 1.09005 * 115.51749 * 330.41866 * 11 10 9 13 13 C 1.53000 * 117.44546 * 185.00108 * 11 10 9 14 14 H 1.09001 * 119.52587 * 4.09050 * 13 11 10 15 15 C 1.54384 * 118.13256 * 160.68036 * 13 11 10 16 16 N 1.48554 * 104.59315 * 87.22868 * 15 13 11 17 17 C 1.46898 * 111.00278 * 200.96123 * 16 15 13 18 18 C 1.50695 * 109.47297 * 285.42514 * 17 16 15 19 19 O 1.21291 * 119.99920 * 359.97438 * 18 17 16 20 20 N 1.34779 * 120.00033 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99647 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00441 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99901 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99993 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00272 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47398 * 89.99328 * 25 23 21 27 27 H 1.48501 * 109.47349 * 209.99519 * 25 23 21 28 28 H 1.48502 * 109.47230 * 329.99415 * 25 23 21 29 29 C 1.48563 * 104.22584 * 320.51800 * 16 15 13 30 30 C 1.53000 * 117.44827 * 115.77276 * 11 10 9 31 31 H 1.08994 * 119.52466 * 355.90894 * 30 11 10 32 32 H 1.09000 * 109.47062 * 95.43533 * 1 2 3 33 33 H 1.09001 * 109.47230 * 215.43562 * 1 2 3 34 34 H 1.09004 * 109.47446 * 335.43552 * 1 2 3 35 35 H 1.08002 * 125.42312 * 359.97032 * 3 2 1 36 36 H 1.08003 * 126.11146 * 179.97438 * 5 4 3 37 37 H 0.97004 * 120.00362 * 5.09153 * 9 7 6 38 38 H 1.09005 * 109.46667 * 300.00376 * 10 9 7 39 39 H 1.08997 * 109.46861 * 59.99934 * 10 9 7 40 40 H 1.09002 * 110.41423 * 206.01143 * 15 13 11 41 41 H 1.09006 * 110.40951 * 328.45626 * 15 13 11 42 42 H 1.09007 * 109.46763 * 45.42399 * 17 16 15 43 43 H 1.08999 * 109.47718 * 165.41613 * 17 16 15 44 44 H 0.96996 * 120.00531 * 359.97438 * 20 18 17 45 45 H 0.97000 * 120.00151 * 180.02562 * 24 23 21 46 46 H 1.08994 * 110.41350 * 280.70843 * 29 16 15 47 47 H 1.09001 * 110.41491 * 158.25508 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2644 1.0815 0.0000 4 7 3.5137 0.6922 0.0063 5 6 3.5690 -0.6398 0.0047 6 6 2.2861 -1.1109 -0.0035 7 6 1.8649 -2.5168 -0.0075 8 8 0.6841 -2.7983 0.0770 9 7 2.7858 -3.4960 -0.1047 10 6 2.3603 -4.8930 -0.2210 11 6 3.5922 -5.7953 -0.3149 12 1 4.4714 -5.3433 -0.7740 13 6 3.3566 -7.2870 -0.5606 14 1 2.3425 -7.6504 -0.7270 15 6 4.5307 -8.1295 -1.1037 16 7 5.2715 -8.5643 0.1083 17 6 6.6522 -8.9396 -0.2249 18 6 6.6556 -10.2773 -0.9186 19 8 5.6108 -10.8610 -1.1156 20 7 7.8198 -10.8257 -1.3191 21 6 7.8230 -12.0430 -1.9498 22 1 6.8927 -12.5628 -2.1252 23 6 9.0232 -12.6087 -2.3623 24 7 10.1553 -11.9765 -2.1484 25 14 9.0277 -14.2676 -3.2209 26 1 8.9049 -14.0665 -4.6871 27 1 10.2985 -14.9758 -2.9231 28 1 7.8830 -15.0795 -2.7351 29 6 5.2432 -7.3759 0.9994 30 6 3.8253 -6.7912 0.8230 31 1 3.1601 -6.7856 1.6864 32 1 -0.3633 -0.0973 -1.0230 33 1 -0.3634 -0.8373 0.5958 34 1 -0.3634 0.9347 0.4272 35 1 1.9288 2.1080 -0.0005 36 1 4.4672 -1.2396 0.0084 37 1 3.7305 -3.2758 -0.0977 38 1 1.7745 -5.1685 0.6561 39 1 1.7516 -5.0140 -1.1171 40 1 4.1565 -8.9946 -1.6513 41 1 5.1711 -7.5217 -1.7430 42 1 7.0840 -8.1870 -0.8847 43 1 7.2423 -9.0027 0.6894 44 1 8.6555 -10.3592 -1.1613 45 1 10.9932 -12.3712 -2.4367 46 1 5.9949 -6.6502 0.6892 47 1 5.4054 -7.6735 2.0354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276690711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:31 Heat of formation + Delta-G solvation = 38.480082 kcal Electronic energy + Delta-G solvation = -28812.383211 eV Core-core repulsion = 24611.664709 eV Total energy + Delta-G solvation = -4200.718502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.67182 -40.31546 -39.46793 -37.98279 -35.72499 -34.56804 -34.03260 -33.53566 -31.22655 -30.80894 -28.55781 -28.31304 -27.58859 -26.46447 -24.50619 -23.31325 -22.04286 -21.63752 -21.08116 -20.35490 -20.09112 -19.11081 -18.41786 -17.83576 -16.68749 -16.52142 -16.51119 -16.02553 -15.58816 -15.31152 -15.01518 -14.67956 -14.53694 -14.47088 -14.23614 -13.86778 -13.78840 -13.54404 -13.45084 -13.35385 -13.24792 -12.96636 -12.73326 -12.30022 -11.92314 -11.56384 -11.40100 -11.35198 -11.14461 -10.94147 -10.88139 -10.38808 -10.37168 -10.23064 -10.21426 -10.13814 -10.02441 -9.51870 -9.48235 -9.07454 -8.50782 -8.01716 -7.93934 -6.40690 -3.81403 0.83587 1.97061 2.37468 2.80015 2.90494 3.18462 3.27090 3.32984 3.39037 3.90370 3.97129 4.03803 4.17968 4.19485 4.28599 4.33651 4.51779 4.57601 4.69581 4.82280 4.87485 4.89656 5.00461 5.04508 5.11493 5.23031 5.25315 5.32762 5.37319 5.54334 5.60020 5.62454 5.75896 5.80315 5.83806 5.94876 6.01512 6.04691 6.10749 6.27821 6.37372 6.51407 6.98614 7.04908 7.18522 7.39373 7.56195 7.70904 8.07354 8.63185 9.19490 9.55753 10.07875 10.77147 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026288 B = 0.001516 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.850572 B =18460.007988 C =18948.374568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.427 5.427 3 C 0.206 3.794 4 N -0.497 5.497 5 C 0.040 3.960 6 C -0.089 4.089 7 C 0.595 3.405 8 O -0.546 6.546 9 N -0.712 5.712 10 C 0.158 3.842 11 C -0.146 4.146 12 H 0.108 0.892 13 C -0.141 4.141 14 H 0.121 0.879 15 C 0.067 3.933 16 N -0.484 5.484 17 C 0.034 3.966 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.058 3.942 30 C -0.154 4.154 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.214 0.786 36 H 0.179 0.821 37 H 0.405 0.595 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.041 0.959 42 H 0.051 0.949 43 H 0.090 0.910 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.043 0.957 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.542 26.249 5.582 30.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.108 5.108 3 C -0.076 4.076 4 N -0.215 5.215 5 C -0.115 4.115 6 C -0.206 4.206 7 C 0.382 3.618 8 O -0.425 6.425 9 N -0.364 5.364 10 C 0.035 3.965 11 C -0.165 4.165 12 H 0.126 0.874 13 C -0.161 4.161 14 H 0.138 0.862 15 C -0.061 4.061 16 N -0.207 5.207 17 C -0.097 4.097 18 C 0.230 3.770 19 O -0.460 6.460 20 N -0.203 5.203 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.070 4.070 30 C -0.172 4.172 31 H 0.137 0.863 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.230 0.770 36 H 0.196 0.804 37 H 0.240 0.760 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.662 25.582 5.706 30.534 hybrid contribution 0.864 -0.182 -0.707 1.132 sum -14.798 25.400 4.999 29.818 Atomic orbital electron populations 1.22288 0.75110 1.05304 1.04715 1.45284 1.08418 1.05777 1.51283 1.25204 0.85536 0.93675 1.03156 1.70176 1.19037 1.12116 1.20121 1.22686 0.95168 0.91414 1.02228 1.20749 0.91598 0.88857 1.19369 1.16729 0.85502 0.83153 0.76413 1.90809 1.16982 1.84043 1.50656 1.45600 1.09774 1.06392 1.74606 1.20857 0.94947 0.77995 1.02742 1.22648 0.99258 0.91444 1.03125 0.87421 1.23509 1.00638 0.92244 0.99691 0.86152 1.22685 0.92935 0.98227 0.92225 1.65282 1.12626 1.30984 1.11852 1.22056 0.90028 0.97113 1.00547 1.19688 0.84877 0.87593 0.84804 1.90513 1.31573 1.63935 1.59976 1.41859 1.07014 1.19462 1.51957 1.19698 0.94798 0.95350 1.32939 0.87933 1.25249 0.94697 0.99890 0.98116 1.69611 0.97950 1.39369 1.47486 0.85862 0.77683 0.81470 0.79296 1.20463 1.20945 1.19419 1.22678 0.93829 0.91328 0.99117 1.23577 0.98452 1.02307 0.92905 0.86313 0.90016 0.87945 0.89164 0.77004 0.80382 0.75995 0.90613 0.90453 0.87963 0.94113 0.93150 0.89223 0.77539 0.91914 0.93834 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.32 10.59 59.85 0.63 0.95 16 2 N -0.43 -3.11 3.17 -121.97 -0.39 -3.50 16 3 C 0.21 1.37 12.52 -90.58 -1.13 0.23 16 4 N -0.50 -4.57 11.20 -14.43 -0.16 -4.73 16 5 C 0.04 0.32 11.37 -17.47 -0.20 0.13 16 6 C -0.09 -0.78 6.91 -82.14 -0.57 -1.34 16 7 C 0.60 5.74 7.78 -12.82 -0.10 5.64 16 8 O -0.55 -6.76 15.00 5.20 0.08 -6.68 16 9 N -0.71 -5.37 5.54 -61.60 -0.34 -5.71 16 10 C 0.16 1.29 5.96 -4.05 -0.02 1.27 16 11 C -0.15 -1.26 5.39 -90.63 -0.49 -1.75 16 12 H 0.11 0.87 8.04 -51.93 -0.42 0.45 16 13 C -0.14 -1.61 6.84 -89.24 -0.61 -2.22 16 14 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 15 C 0.07 1.00 5.73 -2.18 -0.01 0.99 16 16 N -0.48 -7.86 4.98 -231.40 -1.15 -9.01 16 17 C 0.03 0.60 5.32 -4.98 -0.03 0.57 16 18 C 0.45 10.46 7.63 -10.99 -0.08 10.37 16 19 O -0.58 -15.56 14.80 5.55 0.08 -15.48 16 20 N -0.57 -14.28 5.29 -10.96 -0.06 -14.34 16 21 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 25 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 29 C 0.06 0.70 6.26 -2.18 -0.01 0.68 16 30 C -0.15 -1.57 6.74 -89.24 -0.60 -2.17 16 31 H 0.12 1.12 8.12 -51.93 -0.42 0.70 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.67 6.71 -51.93 -0.35 0.32 16 34 H 0.09 0.14 8.13 -51.93 -0.42 -0.28 16 35 H 0.21 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.18 0.95 7.46 -52.48 -0.39 0.56 16 37 H 0.40 2.14 7.35 -40.82 -0.30 1.84 16 38 H 0.08 0.67 7.94 -51.93 -0.41 0.26 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 1.85 7.24 -51.93 -0.38 1.47 16 41 H 0.04 0.59 7.75 -51.93 -0.40 0.18 16 42 H 0.05 0.80 7.77 -51.93 -0.40 0.39 16 43 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 44 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.04 0.47 8.00 -51.93 -0.42 0.06 16 47 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 394.68 15.07 5.95 5.95 Total: -1.00 -35.81 394.68 -10.43 -46.24 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -6.68 Total: 9.59 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -3.47 Total: 5.40 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -1.38 Total: -61.04 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.16 Total: -22.16 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.81 -10.43 -46.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276690711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.724 kcal (2) G-P(sol) polarization free energy of solvation -35.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds