Wall clock time and date at job start Wed Apr 1 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34489 * 126.47053 * 2 1 4 4 N 1.30858 * 109.16328 * 179.70876 * 3 2 1 5 5 C 1.33319 * 109.68353 * 0.26523 * 4 3 2 6 6 C 1.36668 * 107.78571 * 0.02562 * 5 4 3 7 7 C 1.46766 * 126.84426 * 180.02562 * 6 5 4 8 8 O 1.21683 * 119.99878 * 174.99324 * 7 6 5 9 9 N 1.34772 * 120.00060 * 354.99403 * 7 6 5 10 10 C 1.46500 * 120.00445 * 185.08607 * 9 7 6 11 11 C 1.52990 * 109.47565 * 180.02562 * 10 9 7 12 12 H 1.09005 * 115.51749 * 330.41866 * 11 10 9 13 13 C 1.53000 * 117.44546 * 185.00108 * 11 10 9 14 14 H 1.09001 * 119.52587 * 4.09050 * 13 11 10 15 15 C 1.54384 * 118.13256 * 160.68036 * 13 11 10 16 16 N 1.48554 * 104.59315 * 87.22868 * 15 13 11 17 17 C 1.46898 * 111.00278 * 200.96123 * 16 15 13 18 18 C 1.50695 * 109.47297 * 285.42514 * 17 16 15 19 19 O 1.21291 * 119.99920 * 359.97438 * 18 17 16 20 20 N 1.34779 * 120.00033 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99647 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00441 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99901 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99993 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00272 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47398 * 89.99328 * 25 23 21 27 27 H 1.48501 * 109.47349 * 209.99519 * 25 23 21 28 28 H 1.48502 * 109.47230 * 329.99415 * 25 23 21 29 29 C 1.48563 * 104.22584 * 320.51800 * 16 15 13 30 30 C 1.53000 * 117.44827 * 115.77276 * 11 10 9 31 31 H 1.08994 * 119.52466 * 355.90894 * 30 11 10 32 32 H 1.09000 * 109.47062 * 95.43533 * 1 2 3 33 33 H 1.09001 * 109.47230 * 215.43562 * 1 2 3 34 34 H 1.09004 * 109.47446 * 335.43552 * 1 2 3 35 35 H 1.08002 * 125.42312 * 359.97032 * 3 2 1 36 36 H 1.08003 * 126.11146 * 179.97438 * 5 4 3 37 37 H 0.97004 * 120.00362 * 5.09153 * 9 7 6 38 38 H 1.09005 * 109.46667 * 300.00376 * 10 9 7 39 39 H 1.08997 * 109.46861 * 59.99934 * 10 9 7 40 40 H 1.09002 * 110.41423 * 206.01143 * 15 13 11 41 41 H 1.09006 * 110.40951 * 328.45626 * 15 13 11 42 42 H 1.09007 * 109.46763 * 45.42399 * 17 16 15 43 43 H 1.08999 * 109.47718 * 165.41613 * 17 16 15 44 44 H 0.96996 * 120.00531 * 359.97438 * 20 18 17 45 45 H 0.97000 * 120.00151 * 180.02562 * 24 23 21 46 46 H 1.08994 * 110.41350 * 280.70843 * 29 16 15 47 47 H 1.09001 * 110.41491 * 158.25508 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2644 1.0815 0.0000 4 7 3.5137 0.6922 0.0063 5 6 3.5690 -0.6398 0.0047 6 6 2.2861 -1.1109 -0.0035 7 6 1.8649 -2.5168 -0.0075 8 8 0.6841 -2.7983 0.0770 9 7 2.7858 -3.4960 -0.1047 10 6 2.3603 -4.8930 -0.2210 11 6 3.5922 -5.7953 -0.3149 12 1 4.4714 -5.3433 -0.7740 13 6 3.3566 -7.2870 -0.5606 14 1 2.3425 -7.6504 -0.7270 15 6 4.5307 -8.1295 -1.1037 16 7 5.2715 -8.5643 0.1083 17 6 6.6522 -8.9396 -0.2249 18 6 6.6556 -10.2773 -0.9186 19 8 5.6108 -10.8610 -1.1156 20 7 7.8198 -10.8257 -1.3191 21 6 7.8230 -12.0430 -1.9498 22 1 6.8927 -12.5628 -2.1252 23 6 9.0232 -12.6087 -2.3623 24 7 10.1553 -11.9765 -2.1484 25 14 9.0277 -14.2676 -3.2209 26 1 8.9049 -14.0665 -4.6871 27 1 10.2985 -14.9758 -2.9231 28 1 7.8830 -15.0795 -2.7351 29 6 5.2432 -7.3759 0.9994 30 6 3.8253 -6.7912 0.8230 31 1 3.1601 -6.7856 1.6864 32 1 -0.3633 -0.0973 -1.0230 33 1 -0.3634 -0.8373 0.5958 34 1 -0.3634 0.9347 0.4272 35 1 1.9288 2.1080 -0.0005 36 1 4.4672 -1.2396 0.0084 37 1 3.7305 -3.2758 -0.0977 38 1 1.7745 -5.1685 0.6561 39 1 1.7516 -5.0140 -1.1171 40 1 4.1565 -8.9946 -1.6513 41 1 5.1711 -7.5217 -1.7430 42 1 7.0840 -8.1870 -0.8847 43 1 7.2423 -9.0027 0.6894 44 1 8.6555 -10.3592 -1.1613 45 1 10.9932 -12.3712 -2.4367 46 1 5.9949 -6.6502 0.6892 47 1 5.4054 -7.6735 2.0354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276690711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:30 Heat of formation + Delta-G solvation = 12.042068 kcal Electronic energy + Delta-G solvation = -28813.529649 eV Core-core repulsion = 24611.664709 eV Total energy + Delta-G solvation = -4201.864940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.20016 -41.29698 -40.32814 -39.70420 -36.65529 -35.91438 -35.14192 -34.57999 -33.24414 -31.47899 -29.67263 -29.35592 -28.00296 -27.67821 -26.17758 -24.07055 -22.97995 -22.27412 -21.88423 -21.32705 -20.87250 -20.80711 -19.84622 -18.99173 -17.75137 -17.29699 -17.25453 -17.05797 -16.61953 -16.56032 -16.18219 -15.99793 -15.81296 -15.35555 -15.21292 -14.99172 -14.82110 -14.46337 -14.41290 -14.28669 -13.89611 -13.84183 -13.61016 -13.49135 -13.47729 -13.15786 -12.95512 -12.51620 -12.41485 -12.26952 -12.17060 -12.10370 -11.58904 -11.48469 -11.07753 -10.99897 -10.85627 -10.74739 -10.30714 -10.21628 -9.99585 -9.63143 -9.30850 -8.45737 -5.94254 0.25829 1.38167 1.41851 1.46145 1.54527 1.81624 2.07163 2.20215 2.27019 2.28960 2.56200 2.84920 3.21023 3.30515 3.47541 3.53250 3.67518 3.80686 3.94186 4.02330 4.06885 4.11768 4.14704 4.24981 4.30315 4.35737 4.42913 4.44218 4.50192 4.56138 4.59718 4.67951 4.69662 4.74918 4.96248 5.04894 5.11837 5.19948 5.25667 5.35134 5.41657 5.45130 5.85993 5.91596 6.07697 6.10133 6.38492 6.62266 6.86549 7.06739 7.14432 7.58078 8.14579 8.71674 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026288 B = 0.001516 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.850572 B =18460.007988 C =18948.374568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.433 5.433 3 C 0.217 3.783 4 N -0.534 5.534 5 C 0.041 3.959 6 C -0.114 4.114 7 C 0.594 3.406 8 O -0.581 6.581 9 N -0.701 5.701 10 C 0.163 3.837 11 C -0.111 4.111 12 H 0.123 0.877 13 C -0.158 4.158 14 H 0.121 0.879 15 C 0.067 3.933 16 N -0.512 5.512 17 C 0.048 3.952 18 C 0.441 3.559 19 O -0.618 6.618 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.274 1.274 29 C 0.059 3.941 30 C -0.147 4.147 31 H 0.131 0.869 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.252 0.748 36 H 0.199 0.801 37 H 0.417 0.583 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.064 0.936 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.101 28.510 6.099 32.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.113 5.113 3 C -0.065 4.065 4 N -0.252 5.252 5 C -0.114 4.114 6 C -0.231 4.231 7 C 0.382 3.618 8 O -0.462 6.462 9 N -0.352 5.352 10 C 0.040 3.960 11 C -0.130 4.130 12 H 0.141 0.859 13 C -0.177 4.177 14 H 0.139 0.861 15 C -0.060 4.060 16 N -0.237 5.237 17 C -0.084 4.084 18 C 0.228 3.772 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.463 4.463 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.199 1.199 29 C -0.068 4.068 30 C -0.166 4.166 31 H 0.148 0.852 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.144 0.856 35 H 0.268 0.732 36 H 0.216 0.784 37 H 0.255 0.745 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.129 0.871 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.189 27.866 6.235 32.343 hybrid contribution 0.684 -0.824 -0.850 1.367 sum -14.505 27.042 5.384 31.156 Atomic orbital electron populations 1.22407 0.73915 1.06326 1.04782 1.45516 1.09270 1.05580 1.50965 1.25993 0.84881 0.94919 1.00712 1.70202 1.20550 1.12610 1.21837 1.23085 0.95722 0.91489 1.01067 1.20748 0.92272 0.88808 1.21243 1.16912 0.85174 0.83838 0.75863 1.90791 1.18371 1.84572 1.52482 1.45467 1.10268 1.05742 1.73757 1.20732 0.94576 0.78262 1.02457 1.22536 0.99611 0.89733 1.01108 0.85925 1.23343 0.99366 0.94071 1.00962 0.86130 1.22519 0.94270 0.97206 0.92027 1.65202 1.11741 1.33878 1.12874 1.21897 0.91689 0.93694 1.01080 1.20807 0.83597 0.89234 0.83518 1.90485 1.32928 1.65666 1.61258 1.41925 1.07828 1.19114 1.52427 1.19646 0.94442 0.96989 1.35214 0.90489 1.26005 0.94003 1.03024 0.98150 1.69667 0.98332 1.40561 1.47553 0.84943 0.77840 0.77269 0.78371 1.19653 1.19490 1.19932 1.22748 0.95362 0.90210 0.98490 1.23636 0.97569 1.02449 0.92903 0.85156 0.89805 0.90027 0.85638 0.73235 0.78373 0.74502 0.90936 0.90894 0.92246 0.93510 0.90911 0.87102 0.77010 0.91328 0.91786 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 10.59 127.77 1.35 1.89 16 2 N -0.43 -5.63 3.17 -539.80 -1.71 -7.34 16 3 C 0.22 2.37 12.52 180.33 2.26 4.63 16 4 N -0.53 -8.84 11.20 -199.56 -2.24 -11.08 16 5 C 0.04 0.60 11.37 84.10 0.96 1.56 16 6 C -0.11 -1.86 6.91 40.01 0.28 -1.58 16 7 C 0.59 10.95 7.78 86.47 0.67 11.62 16 8 O -0.58 -14.31 15.00 -4.29 -0.06 -14.37 16 9 N -0.70 -9.31 5.54 -467.02 -2.59 -11.90 16 10 C 0.16 2.40 5.96 86.38 0.51 2.92 16 11 C -0.11 -1.66 5.39 -10.80 -0.06 -1.71 16 12 H 0.12 1.54 8.04 -2.38 -0.02 1.53 16 13 C -0.16 -3.47 6.84 -9.90 -0.07 -3.54 16 14 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 15 C 0.07 2.04 5.73 86.45 0.49 2.54 16 16 N -0.51 -16.27 4.98 -886.03 -4.41 -20.68 16 17 C 0.05 1.63 5.32 85.56 0.45 2.09 16 18 C 0.44 21.18 7.63 87.65 0.67 21.85 16 19 O -0.62 -34.77 14.80 -3.06 -0.05 -34.82 16 20 N -0.58 -29.67 5.29 -306.99 -1.62 -31.30 16 21 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 24 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 25 Si 0.99 43.20 29.55 68.60 2.03 45.23 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 29 C 0.06 1.26 6.26 86.45 0.54 1.80 16 30 C -0.15 -2.68 6.74 -9.90 -0.07 -2.74 16 31 H 0.13 2.12 8.12 -2.39 -0.02 2.10 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 1.05 6.71 -2.39 -0.02 1.03 16 34 H 0.13 0.06 8.13 -2.38 -0.02 0.04 16 35 H 0.25 0.32 8.06 -2.91 -0.02 0.29 16 36 H 0.20 1.70 7.46 -2.91 -0.02 1.67 16 37 H 0.42 3.36 7.35 -92.71 -0.68 2.68 16 38 H 0.07 1.17 7.94 -2.38 -0.02 1.16 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 2.29 7.24 -2.39 -0.02 2.27 16 41 H 0.05 1.32 7.75 -2.38 -0.02 1.30 16 42 H 0.07 2.16 7.77 -2.38 -0.02 2.15 16 43 H 0.11 3.31 8.08 -2.39 -0.02 3.29 16 44 H 0.40 19.29 7.90 -92.71 -0.73 18.55 16 45 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 46 H 0.06 1.14 8.00 -2.39 -0.02 1.12 16 47 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -80.42 394.68 -1.48 -81.90 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.39 Total: 30.88 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 9.28 Total: 22.86 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -12.29 Total: -131.67 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -0.11 Total: -49.19 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -80.42 -1.48 -81.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276690711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.940 kcal (2) G-P(sol) polarization free energy of solvation -80.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds