Wall clock time and date at job start Wed Apr 1 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 119.99806 * 2 1 4 4 O 1.21517 * 120.00306 * 175.81904 * 3 2 1 5 5 C 1.48132 * 120.00082 * 355.80805 * 3 2 1 6 6 C 1.40112 * 121.14664 * 209.66524 * 5 3 2 7 7 C 1.38510 * 117.81888 * 179.74536 * 6 5 3 8 8 N 1.31911 * 119.97030 * 0.53963 * 7 6 5 9 9 N 1.28283 * 122.52021 * 359.71992 * 8 7 6 10 10 C 1.31923 * 122.32050 * 0.02562 * 9 8 7 11 11 C 1.46500 * 120.00454 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.47165 * 183.48984 * 11 2 1 13 13 C 1.53005 * 109.46835 * 63.48660 * 11 2 1 14 14 N 1.46898 * 109.46967 * 55.00363 * 13 11 2 15 15 C 1.46897 * 110.99726 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.47010 * 179.97438 * 15 14 13 17 17 O 1.21289 * 120.00122 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00115 * 180.02562 * 16 15 14 19 19 C 1.37096 * 120.00430 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99915 * 359.97438 * 19 18 16 21 21 C 1.38953 * 120.00474 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99845 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00063 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47202 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47037 * 119.99628 * 23 21 19 26 26 H 1.48503 * 109.46633 * 239.99560 * 23 21 19 27 27 C 1.53003 * 109.47152 * 303.48849 * 11 2 1 28 28 C 1.52997 * 117.49942 * 253.14710 * 27 11 2 29 29 C 1.52998 * 117.49694 * 184.48686 * 27 11 2 30 30 H 1.09004 * 109.46819 * 264.50750 * 1 2 3 31 31 H 1.08991 * 109.47473 * 24.50810 * 1 2 3 32 32 H 1.09003 * 109.47044 * 144.51703 * 1 2 3 33 33 H 1.07996 * 121.08787 * 359.97438 * 6 5 3 34 34 H 1.08002 * 120.01575 * 180.23898 * 7 6 5 35 35 H 1.08004 * 120.17317 * 179.97438 * 10 9 8 36 36 H 1.08998 * 109.47136 * 294.99699 * 13 11 2 37 37 H 1.09003 * 109.46807 * 175.00082 * 13 11 2 38 38 H 1.00896 * 111.00386 * 56.04539 * 14 13 11 39 39 H 1.08997 * 109.47652 * 299.99828 * 15 14 13 40 40 H 1.08997 * 109.47500 * 60.00071 * 15 14 13 41 41 H 0.97007 * 119.99955 * 359.97438 * 18 16 15 42 42 H 0.96998 * 120.00502 * 180.02562 * 22 21 19 43 43 H 1.08998 * 115.54766 * 38.81799 * 27 11 2 44 44 H 1.08999 * 117.49919 * 0.02562 * 28 27 11 45 45 H 1.08998 * 117.49923 * 145.01891 * 28 27 11 46 46 H 1.09006 * 117.49491 * 214.97445 * 29 27 11 47 47 H 1.08992 * 117.50330 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3515 1.1687 0.0767 5 6 1.4011 2.4484 -0.0938 6 6 1.9789 3.5751 -0.6935 7 6 1.2253 4.7360 -0.7487 8 7 0.0099 4.7576 -0.2365 9 7 -0.5229 3.7311 0.3186 10 6 0.1074 2.5765 0.4185 11 6 2.1975 -1.2687 0.0006 12 1 3.2675 -1.0703 0.0630 13 6 1.8949 -2.0329 -1.2899 14 7 2.2004 -1.1806 -2.4468 15 6 1.9218 -1.8833 -3.7064 16 6 2.2459 -0.9795 -4.8680 17 8 2.6669 0.1399 -4.6664 18 7 2.0668 -1.4148 -6.1309 19 6 2.3621 -0.5929 -7.1877 20 1 2.7378 0.4037 -7.0082 21 6 2.1770 -1.0415 -8.4897 22 7 1.7194 -2.2538 -8.7081 23 14 2.5801 0.0783 -9.9296 24 1 3.0760 1.3817 -9.4193 25 1 3.6269 -0.5550 -10.7712 26 1 1.3571 0.2984 -10.7427 27 6 1.7633 -2.1078 1.2040 28 6 2.7490 -2.2384 2.3668 29 6 2.4929 -3.4313 1.4425 30 1 -0.3633 -0.0984 1.0230 31 1 -0.3634 0.9350 -0.4263 32 1 -0.3633 -0.8368 -0.5965 33 1 2.9777 3.5386 -1.1026 34 1 1.6345 5.6244 -1.2066 35 1 -0.3743 1.7344 0.8933 36 1 0.8406 -2.3087 -1.3101 37 1 2.5070 -2.9339 -1.3307 38 1 3.1561 -0.8587 -2.4164 39 1 2.5344 -2.7830 -3.7637 40 1 0.8678 -2.1584 -3.7436 41 1 1.7297 -2.3100 -6.2921 42 1 1.5905 -2.5672 -9.6170 43 1 0.7014 -2.0677 1.4465 44 1 3.7067 -1.7261 2.2747 45 1 2.3356 -2.2845 3.3743 46 1 1.9110 -4.2618 1.8424 47 1 3.2819 -3.7045 0.7419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277703634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:45 Heat of formation + Delta-G solvation = 45.433062 kcal Electronic energy + Delta-G solvation = -30563.044982 eV Core-core repulsion = 26362.627984 eV Total energy + Delta-G solvation = -4200.416998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.52383 -40.04749 -38.35699 -37.92193 -35.82165 -35.03687 -33.87178 -33.32834 -32.77924 -31.25792 -29.77337 -27.52586 -26.66884 -25.33865 -24.64937 -24.18728 -22.94957 -22.18446 -21.11853 -19.89819 -19.18833 -18.37691 -17.91274 -17.44644 -16.94415 -16.81526 -16.21631 -15.93245 -15.54972 -15.05866 -15.01683 -14.74887 -14.57888 -14.43921 -14.08102 -13.82003 -13.73801 -13.45433 -13.35946 -13.22665 -12.98594 -12.32835 -12.19574 -12.00276 -11.81466 -11.59523 -11.52182 -11.26414 -11.07706 -11.06201 -10.82621 -10.53437 -10.40051 -10.36673 -10.35465 -10.24916 -10.19679 -9.71508 -9.54627 -8.86014 -8.48671 -8.11459 -7.98789 -6.44551 -3.85322 0.21374 0.65319 2.47448 2.67289 3.14273 3.25031 3.32176 3.38927 3.48123 3.83480 3.87495 3.95334 4.05425 4.18603 4.24010 4.34464 4.51908 4.59579 4.65505 4.68485 4.81098 4.92545 5.03404 5.04243 5.06865 5.16020 5.22594 5.24529 5.33991 5.38750 5.41601 5.56194 5.58653 5.59735 5.70346 5.74561 5.82638 5.88575 5.90223 5.92662 6.21067 6.27915 7.09415 7.12839 7.52726 7.57050 7.89744 8.03592 8.42325 8.58295 9.15350 9.51322 10.02735 10.73254 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008700 B = 0.003096 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.551325 B = 9041.140268 C =11500.304644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.578 5.578 3 C 0.574 3.426 4 O -0.526 6.526 5 C -0.122 4.122 6 C -0.054 4.054 7 C 0.040 3.960 8 N -0.233 5.233 9 N -0.247 5.247 10 C 0.050 3.950 11 C 0.176 3.824 12 H 0.103 0.897 13 C 0.049 3.951 14 N -0.665 5.665 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.281 1.281 27 C -0.165 4.165 28 C -0.174 4.174 29 C -0.170 4.170 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.162 0.838 34 H 0.180 0.820 35 H 0.190 0.810 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.350 0.650 39 H 0.043 0.957 40 H 0.084 0.916 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 -0.582 21.569 21.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.308 5.308 3 C 0.361 3.639 4 O -0.403 6.403 5 C -0.137 4.137 6 C -0.084 4.084 7 C -0.124 4.124 8 N -0.075 5.075 9 N -0.088 5.088 10 C -0.114 4.114 11 C 0.072 3.928 12 H 0.121 0.879 13 C -0.081 4.081 14 N -0.297 5.297 15 C -0.081 4.081 16 C 0.226 3.774 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.185 4.185 28 C -0.211 4.211 29 C -0.207 4.207 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.180 0.820 34 H 0.198 0.802 35 H 0.206 0.794 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.170 0.830 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.128 0.872 44 H 0.115 0.885 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.722 1.275 21.866 22.217 hybrid contribution 1.848 -1.713 -1.420 2.892 sum -1.874 -0.438 20.446 20.537 Atomic orbital electron populations 1.22436 0.79854 1.04883 1.01371 1.47250 1.06750 1.04950 1.71874 1.17791 0.86789 0.82877 0.76469 1.90783 1.13102 1.86765 1.49602 1.21137 0.95975 0.96023 1.00528 1.22639 1.01666 0.91374 0.92754 1.24384 0.92053 0.99044 0.96878 1.72850 1.09918 1.20477 1.04234 1.73090 1.28820 0.96297 1.10613 1.25265 0.91611 0.98435 0.96104 1.20675 0.97828 0.81825 0.92445 0.87894 1.22291 1.01785 0.94155 0.89897 1.60029 1.31525 1.38372 0.99790 1.21658 1.01556 0.95090 0.89754 1.19796 0.85095 0.88727 0.83819 1.90528 1.50468 1.20905 1.84703 1.41867 1.57644 1.16328 1.04201 1.19745 1.40625 0.98467 0.83985 0.87924 1.25259 0.97185 0.96625 0.98853 1.69616 1.45743 1.16764 1.22189 0.85810 0.78048 0.80027 0.80535 1.19213 1.20730 1.20712 1.22519 0.98592 0.99841 0.97503 1.23028 1.00767 1.02178 0.95122 1.22946 1.03200 0.91443 1.03123 0.91916 0.89550 0.90108 0.82005 0.80249 0.79386 0.90559 0.94043 0.83032 0.93912 0.89742 0.77504 0.91914 0.87202 0.88514 0.88754 0.88443 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 7.77 59.84 0.47 0.92 16 2 N -0.58 -6.23 2.49 -174.94 -0.43 -6.67 16 3 C 0.57 7.65 7.51 -12.20 -0.09 7.56 16 4 O -0.53 -8.55 16.16 5.35 0.09 -8.47 16 5 C -0.12 -1.49 5.55 -104.57 -0.58 -2.07 16 6 C -0.05 -0.64 9.81 -38.78 -0.38 -1.02 16 7 C 0.04 0.44 11.30 -17.42 -0.20 0.24 16 8 N -0.23 -3.03 11.48 30.53 0.35 -2.68 16 9 N -0.25 -3.16 11.49 30.78 0.35 -2.81 16 10 C 0.05 0.53 8.81 -16.95 -0.15 0.38 16 11 C 0.18 1.81 2.47 -67.93 -0.17 1.64 16 12 H 0.10 1.27 6.70 -51.93 -0.35 0.92 16 13 C 0.05 0.54 4.82 -3.82 -0.02 0.53 16 14 N -0.66 -10.29 5.85 -115.06 -0.67 -10.96 16 15 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 16 C 0.44 10.29 7.82 -10.99 -0.09 10.20 16 17 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 18 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 20 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 23 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 C -0.17 -1.27 5.11 -90.62 -0.46 -1.73 16 28 C -0.17 -1.30 10.18 -26.69 -0.27 -1.57 16 29 C -0.17 -1.17 9.88 -26.69 -0.26 -1.43 16 30 H 0.06 0.32 7.34 -51.93 -0.38 -0.06 16 31 H 0.09 0.76 4.53 -51.93 -0.24 0.52 16 32 H 0.08 0.63 6.74 -51.93 -0.35 0.28 16 33 H 0.16 1.79 8.03 -52.49 -0.42 1.37 16 34 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.19 1.42 4.77 -52.48 -0.25 1.17 16 36 H 0.08 0.77 7.02 -51.93 -0.36 0.40 16 37 H 0.04 0.42 7.78 -51.93 -0.40 0.02 16 38 H 0.35 6.08 8.43 -39.29 -0.33 5.75 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.11 0.72 7.26 -51.93 -0.38 0.35 16 44 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.10 0.69 7.95 -51.93 -0.41 0.28 16 LS Contribution 393.42 15.07 5.93 5.93 Total: -1.00 -34.69 393.42 -7.37 -42.07 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -6.24 Total: 14.65 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -2.47 Total: 6.54 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: 0.26 Total: -61.08 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: 0.17 Total: -24.13 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.69 -7.37 -42.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277703634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.502 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds