Wall clock time and date at job start Wed Apr 1 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 119.99806 * 2 1 4 4 O 1.21517 * 120.00306 * 175.81904 * 3 2 1 5 5 C 1.48132 * 120.00082 * 355.80805 * 3 2 1 6 6 C 1.40112 * 121.14664 * 209.66524 * 5 3 2 7 7 C 1.38510 * 117.81888 * 179.74536 * 6 5 3 8 8 N 1.31911 * 119.97030 * 0.53963 * 7 6 5 9 9 N 1.28283 * 122.52021 * 359.71992 * 8 7 6 10 10 C 1.31923 * 122.32050 * 0.02562 * 9 8 7 11 11 C 1.46500 * 120.00454 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.47165 * 183.48984 * 11 2 1 13 13 C 1.53005 * 109.46835 * 63.48660 * 11 2 1 14 14 N 1.46898 * 109.46967 * 55.00363 * 13 11 2 15 15 C 1.46897 * 110.99726 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.47010 * 179.97438 * 15 14 13 17 17 O 1.21289 * 120.00122 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00115 * 180.02562 * 16 15 14 19 19 C 1.37096 * 120.00430 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99915 * 359.97438 * 19 18 16 21 21 C 1.38953 * 120.00474 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99845 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00063 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47202 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47037 * 119.99628 * 23 21 19 26 26 H 1.48503 * 109.46633 * 239.99560 * 23 21 19 27 27 C 1.53003 * 109.47152 * 303.48849 * 11 2 1 28 28 C 1.52997 * 117.49942 * 253.14710 * 27 11 2 29 29 C 1.52998 * 117.49694 * 184.48686 * 27 11 2 30 30 H 1.09004 * 109.46819 * 264.50750 * 1 2 3 31 31 H 1.08991 * 109.47473 * 24.50810 * 1 2 3 32 32 H 1.09003 * 109.47044 * 144.51703 * 1 2 3 33 33 H 1.07996 * 121.08787 * 359.97438 * 6 5 3 34 34 H 1.08002 * 120.01575 * 180.23898 * 7 6 5 35 35 H 1.08004 * 120.17317 * 179.97438 * 10 9 8 36 36 H 1.08998 * 109.47136 * 294.99699 * 13 11 2 37 37 H 1.09003 * 109.46807 * 175.00082 * 13 11 2 38 38 H 1.00896 * 111.00386 * 56.04539 * 14 13 11 39 39 H 1.08997 * 109.47652 * 299.99828 * 15 14 13 40 40 H 1.08997 * 109.47500 * 60.00071 * 15 14 13 41 41 H 0.97007 * 119.99955 * 359.97438 * 18 16 15 42 42 H 0.96998 * 120.00502 * 180.02562 * 22 21 19 43 43 H 1.08998 * 115.54766 * 38.81799 * 27 11 2 44 44 H 1.08999 * 117.49919 * 0.02562 * 28 27 11 45 45 H 1.08998 * 117.49923 * 145.01891 * 28 27 11 46 46 H 1.09006 * 117.49491 * 214.97445 * 29 27 11 47 47 H 1.08992 * 117.50330 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3515 1.1687 0.0767 5 6 1.4011 2.4484 -0.0938 6 6 1.9789 3.5751 -0.6935 7 6 1.2253 4.7360 -0.7487 8 7 0.0099 4.7576 -0.2365 9 7 -0.5229 3.7311 0.3186 10 6 0.1074 2.5765 0.4185 11 6 2.1975 -1.2687 0.0006 12 1 3.2675 -1.0703 0.0630 13 6 1.8949 -2.0329 -1.2899 14 7 2.2004 -1.1806 -2.4468 15 6 1.9218 -1.8833 -3.7064 16 6 2.2459 -0.9795 -4.8680 17 8 2.6669 0.1399 -4.6664 18 7 2.0668 -1.4148 -6.1309 19 6 2.3621 -0.5929 -7.1877 20 1 2.7378 0.4037 -7.0082 21 6 2.1770 -1.0415 -8.4897 22 7 1.7194 -2.2538 -8.7081 23 14 2.5801 0.0783 -9.9296 24 1 3.0760 1.3817 -9.4193 25 1 3.6269 -0.5550 -10.7712 26 1 1.3571 0.2984 -10.7427 27 6 1.7633 -2.1078 1.2040 28 6 2.7490 -2.2384 2.3668 29 6 2.4929 -3.4313 1.4425 30 1 -0.3633 -0.0984 1.0230 31 1 -0.3634 0.9350 -0.4263 32 1 -0.3633 -0.8368 -0.5965 33 1 2.9777 3.5386 -1.1026 34 1 1.6345 5.6244 -1.2066 35 1 -0.3743 1.7344 0.8933 36 1 0.8406 -2.3087 -1.3101 37 1 2.5070 -2.9339 -1.3307 38 1 3.1561 -0.8587 -2.4164 39 1 2.5344 -2.7830 -3.7637 40 1 0.8678 -2.1584 -3.7436 41 1 1.7297 -2.3100 -6.2921 42 1 1.5905 -2.5672 -9.6170 43 1 0.7014 -2.0677 1.4465 44 1 3.7067 -1.7261 2.2747 45 1 2.3356 -2.2845 3.3743 46 1 1.9110 -4.2618 1.8424 47 1 3.2819 -3.7045 0.7419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277703634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:42 Heat of formation + Delta-G solvation = 19.314115 kcal Electronic energy + Delta-G solvation = -30564.177584 eV Core-core repulsion = 26362.627984 eV Total energy + Delta-G solvation = -4201.549601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.42875 -40.95769 -40.12829 -38.82743 -36.75416 -36.26528 -35.73268 -34.27347 -33.68898 -33.27778 -30.82093 -28.37883 -28.04209 -26.55009 -25.65903 -25.51253 -23.78065 -22.92170 -21.93127 -21.20332 -20.53035 -19.90268 -19.28092 -18.33913 -17.95801 -17.69325 -17.60962 -17.01008 -16.79617 -16.43837 -16.04740 -15.90454 -15.74074 -15.63382 -15.32724 -15.15252 -14.74069 -14.57871 -14.51077 -14.28093 -13.98786 -13.64950 -13.47864 -13.11428 -13.06007 -12.81349 -12.79471 -12.43496 -12.38781 -12.14363 -12.08130 -11.89245 -11.68369 -11.53588 -11.32960 -11.26015 -11.07914 -11.00854 -10.65695 -10.38073 -10.03389 -9.68534 -9.35106 -8.49203 -5.97684 -0.72737 -0.20600 1.34232 1.39801 1.52374 1.53582 1.79922 2.03352 2.26715 2.49992 2.74320 2.98891 3.01420 3.18147 3.18236 3.36201 3.46391 3.49997 3.72345 3.78336 3.92623 4.08124 4.12271 4.19544 4.26926 4.28804 4.31452 4.43340 4.47403 4.52283 4.54749 4.62599 4.66370 4.72288 4.82609 4.85636 4.94687 5.04239 5.07107 5.23998 5.29475 5.38664 5.45609 5.84877 6.07187 6.20595 6.26879 6.58054 6.94166 7.10845 7.51774 7.54204 8.10023 8.68357 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008700 B = 0.003096 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.551325 B = 9041.140268 C =11500.304644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.572 5.572 3 C 0.566 3.434 4 O -0.569 6.569 5 C -0.136 4.136 6 C -0.067 4.067 7 C 0.046 3.954 8 N -0.257 5.257 9 N -0.268 5.268 10 C 0.062 3.938 11 C 0.178 3.822 12 H 0.076 0.924 13 C 0.053 3.947 14 N -0.677 5.677 15 C 0.068 3.932 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.572 5.572 19 C -0.333 4.333 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.270 1.270 27 C -0.162 4.162 28 C -0.180 4.180 29 C -0.160 4.160 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.161 0.839 34 H 0.212 0.788 35 H 0.221 0.779 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.335 0.665 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.132 0.868 44 H 0.078 0.922 45 H 0.108 0.892 46 H 0.116 0.884 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.169 -2.128 22.283 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.301 5.301 3 C 0.353 3.647 4 O -0.448 6.448 5 C -0.150 4.150 6 C -0.097 4.097 7 C -0.118 4.118 8 N -0.098 5.098 9 N -0.108 5.108 10 C -0.102 4.102 11 C 0.074 3.926 12 H 0.094 0.906 13 C -0.077 4.077 14 N -0.308 5.308 15 C -0.064 4.064 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.463 4.463 20 H 0.094 0.906 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.195 1.195 27 C -0.181 4.181 28 C -0.217 4.217 29 C -0.198 4.198 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.179 0.821 34 H 0.228 0.772 35 H 0.237 0.763 36 H 0.115 0.885 37 H 0.074 0.926 38 H 0.153 0.847 39 H 0.083 0.917 40 H 0.126 0.874 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.149 0.851 44 H 0.096 0.904 45 H 0.127 0.873 46 H 0.134 0.866 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.328 -0.321 22.597 23.219 hybrid contribution 2.354 -1.272 -1.605 3.120 sum -2.974 -1.592 20.992 21.261 Atomic orbital electron populations 1.22705 0.77873 1.04859 1.03910 1.47382 1.08000 1.04377 1.70335 1.18031 0.86457 0.83870 0.76293 1.90755 1.14815 1.87394 1.51880 1.21244 0.96764 0.95788 1.01232 1.22824 1.01922 0.91953 0.92961 1.24806 0.91209 0.99731 0.96083 1.72780 1.10850 1.21082 1.05087 1.73024 1.29541 0.96869 1.11374 1.25652 0.90795 0.98586 0.95166 1.20647 0.96544 0.81923 0.93477 0.90614 1.22405 1.03141 0.93939 0.88197 1.60049 1.30577 1.39718 1.00506 1.21517 1.03201 0.94006 0.87706 1.20943 0.83053 0.88915 0.84735 1.90501 1.51887 1.23214 1.85479 1.41923 1.58239 1.16280 1.04535 1.19662 1.42684 0.98258 0.85681 0.90621 1.25999 0.96470 0.98005 1.00618 1.69665 1.45561 1.17597 1.23162 0.84913 0.78350 0.77904 0.77438 1.19972 1.19506 1.19513 1.22458 0.99605 0.99868 0.96164 1.23041 1.00082 1.02682 0.95929 1.23021 1.02842 0.91488 1.02402 0.88111 0.90373 0.89165 0.82120 0.77174 0.76315 0.88524 0.92615 0.84693 0.91668 0.87389 0.76945 0.91267 0.85064 0.90355 0.87346 0.86564 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.63 7.77 127.77 0.99 1.63 16 2 N -0.57 -11.66 2.49 -825.68 -2.05 -13.71 16 3 C 0.57 15.31 7.51 86.87 0.65 15.96 16 4 O -0.57 -19.47 16.16 -3.77 -0.06 -19.53 16 5 C -0.14 -3.34 5.55 -19.83 -0.11 -3.45 16 6 C -0.07 -1.61 9.81 22.79 0.22 -1.39 16 7 C 0.05 0.99 11.30 84.75 0.96 1.95 16 8 N -0.26 -6.63 11.48 -57.33 -0.66 -7.28 16 9 N -0.27 -6.70 11.49 -56.53 -0.65 -7.35 16 10 C 0.06 1.28 8.81 85.04 0.75 2.03 16 11 C 0.18 3.42 2.47 44.99 0.11 3.53 16 12 H 0.08 1.91 6.70 -2.39 -0.02 1.90 16 13 C 0.05 1.04 4.82 86.31 0.42 1.46 16 14 N -0.68 -20.39 5.85 -517.94 -3.03 -23.42 16 15 C 0.07 2.22 6.17 85.56 0.53 2.74 16 16 C 0.44 20.58 7.82 87.66 0.69 21.27 16 17 O -0.62 -34.87 15.78 -3.06 -0.05 -34.92 16 18 N -0.57 -29.17 5.29 -306.98 -1.62 -30.80 16 19 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 20 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 21 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 22 N -0.92 -49.25 13.05 21.66 0.28 -48.96 16 23 Si 0.99 43.03 29.55 68.60 2.03 45.06 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 C -0.16 -2.05 5.11 -10.79 -0.06 -2.10 16 28 C -0.18 -2.39 10.18 30.62 0.31 -2.08 16 29 C -0.16 -1.77 9.88 30.62 0.30 -1.47 16 30 H 0.10 0.61 7.34 -2.38 -0.02 0.59 16 31 H 0.08 1.21 4.53 -2.39 -0.01 1.20 16 32 H 0.09 1.07 6.74 -2.39 -0.02 1.06 16 33 H 0.16 3.82 8.03 -2.91 -0.02 3.79 16 34 H 0.21 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.22 2.80 4.77 -2.91 -0.01 2.79 16 36 H 0.10 1.57 7.02 -2.39 -0.02 1.55 16 37 H 0.06 0.99 7.78 -2.39 -0.02 0.97 16 38 H 0.34 11.86 8.43 -89.70 -0.76 11.11 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 41 H 0.40 19.07 7.90 -92.70 -0.73 18.33 16 42 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 43 H 0.13 1.14 7.26 -2.39 -0.02 1.13 16 44 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 45 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 47 H 0.09 1.13 7.95 -2.39 -0.02 1.11 16 Total: -1.00 -78.02 393.42 0.78 -77.23 By element: Atomic # 1 Polarization: 42.34 SS G_CDS: -0.45 Total: 41.90 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 7.04 Total: 21.79 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -7.73 Total: -131.53 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: -0.11 Total: -54.45 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -78.02 0.78 -77.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277703634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.548 kcal (2) G-P(sol) polarization free energy of solvation -78.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds