Wall clock time and date at job start Wed Apr 1 2020 05:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99865 * 2 1 4 4 C 1.53000 * 109.47213 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46875 * 65.00670 * 4 3 2 6 6 C 1.36939 * 119.99753 * 269.99863 * 5 4 3 7 7 H 1.08006 * 120.00130 * 142.64549 * 6 5 4 8 8 C 1.38814 * 120.00186 * 322.64090 * 6 5 4 9 9 N 1.31616 * 119.99871 * 157.14133 * 8 6 5 10 10 Si 1.86800 * 120.00037 * 337.14770 * 8 6 5 11 11 H 1.48499 * 109.46973 * 95.36450 * 10 8 6 12 12 H 1.48492 * 109.46949 * 215.36518 * 10 8 6 13 13 H 1.48497 * 109.46725 * 335.36621 * 10 8 6 14 14 C 1.46496 * 120.00418 * 89.99804 * 5 4 3 15 15 C 1.52994 * 109.47474 * 266.85028 * 14 5 4 16 16 N 1.46502 * 109.47657 * 179.05121 * 15 14 5 17 17 C 1.34776 * 119.99899 * 180.02562 * 16 15 14 18 18 O 1.21569 * 120.00313 * 359.71579 * 17 16 15 19 19 C 1.47722 * 119.99262 * 180.02562 * 17 16 15 20 20 C 1.40250 * 119.86655 * 359.71223 * 19 17 16 21 21 C 1.36264 * 120.45412 * 179.97438 * 20 19 17 22 22 C 1.39316 * 120.14601 * 0.05030 * 21 20 19 23 23 C 1.40707 * 120.20015 * 359.97438 * 22 21 20 24 24 C 1.38889 * 119.85713 * 179.44892 * 19 17 16 25 25 N 1.35426 * 107.59156 * 179.97438 * 23 22 21 26 26 N 1.28652 * 110.12715 * 359.97438 * 25 23 22 27 27 N 1.37268 * 133.71436 * 179.97438 * 22 21 20 28 28 C 1.46503 * 126.65733 * 0.02908 * 27 22 21 29 29 H 1.08998 * 109.47358 * 59.99685 * 1 2 3 30 30 H 1.09004 * 109.46721 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46851 * 299.99397 * 1 2 3 32 32 H 1.09000 * 109.46791 * 60.00698 * 3 2 1 33 33 H 1.08997 * 109.47655 * 300.00596 * 3 2 1 34 34 H 1.08999 * 109.47209 * 305.00779 * 4 3 2 35 35 H 1.08998 * 109.47224 * 185.00018 * 4 3 2 36 36 H 0.97001 * 119.99848 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.47257 * 146.84332 * 14 5 4 38 38 H 1.09007 * 109.46716 * 26.85010 * 14 5 4 39 39 H 1.09005 * 109.47243 * 59.04835 * 15 14 5 40 40 H 1.08999 * 109.47169 * 299.05333 * 15 14 5 41 41 H 0.96995 * 119.99335 * 359.97438 * 16 15 14 42 42 H 1.08003 * 119.77529 * 0.02562 * 20 19 17 43 43 H 1.08003 * 119.92709 * 180.02562 * 21 20 19 44 44 H 1.07991 * 120.22147 * 0.02562 * 24 19 17 45 45 H 1.08990 * 109.47273 * 89.99140 * 28 27 22 46 46 H 1.09000 * 109.46896 * 209.99880 * 28 27 22 47 47 H 1.09002 * 109.46497 * 329.99298 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5647 -1.2528 6 6 4.0967 -0.7968 -1.3371 7 1 3.8247 -1.3077 -2.2489 8 6 4.5692 -1.5201 -0.2506 9 7 4.2798 -2.7989 -0.1354 10 14 5.6156 -0.6786 1.0480 11 1 4.7513 -0.2436 2.1745 12 1 6.6412 -1.6284 1.5490 13 1 6.2859 0.5051 0.4526 14 6 4.2862 1.4009 -2.4148 15 6 3.0423 1.5323 -3.2959 16 7 3.3464 2.3871 -4.4461 17 6 2.3939 2.6461 -5.3637 18 8 1.2838 2.1663 -5.2397 19 6 2.7009 3.5076 -6.5238 20 6 3.9826 4.0593 -6.6643 21 6 4.2790 4.8551 -7.7299 22 6 3.3077 5.1286 -8.6905 23 6 2.0162 4.5843 -8.5660 24 6 1.7205 3.7633 -7.4738 25 7 1.2886 5.0103 -9.6258 26 7 2.0081 5.7605 -10.3838 27 7 3.2975 5.8721 -9.8443 28 6 4.4165 6.6350 -10.4032 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6886 1.8463 0.8901 33 1 1.6885 1.8465 -0.8899 34 1 3.8514 0.5682 0.8408 35 1 3.9784 2.1766 0.0889 36 1 4.6102 -3.3045 0.6236 37 1 5.0910 0.9413 -2.9886 38 1 4.5988 2.3894 -2.0779 39 1 2.2324 1.9765 -2.7171 40 1 2.7395 0.5456 -3.6464 41 1 4.2331 2.7671 -4.5468 42 1 4.7403 3.8513 -5.9232 43 1 5.2690 5.2752 -7.8298 44 1 0.7350 3.3350 -7.3668 45 1 4.9900 5.9982 -11.0765 46 1 4.0318 7.4932 -10.9541 47 1 5.0600 6.9812 -9.5943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279044130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:58 Heat of formation + Delta-G solvation = 73.692816 kcal Electronic energy + Delta-G solvation = -29795.447573 eV Core-core repulsion = 25596.256010 eV Total energy + Delta-G solvation = -4199.191563 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.46348 -39.85934 -37.60738 -37.28805 -35.91869 -35.13927 -34.35148 -31.69457 -31.15517 -30.97202 -29.59429 -28.06789 -27.68124 -25.63412 -24.88977 -23.77880 -23.39655 -22.04642 -21.57759 -20.90124 -20.42479 -18.42880 -17.81816 -16.85613 -16.73831 -16.54596 -16.16581 -15.89054 -15.35817 -15.13399 -14.96376 -14.66963 -14.61922 -14.22046 -14.02685 -13.89751 -13.69454 -13.63636 -13.35514 -13.16425 -12.71924 -12.60506 -12.49151 -12.25064 -12.11480 -11.88789 -11.67588 -11.19054 -11.16125 -11.10174 -10.99249 -10.71455 -10.63992 -10.26675 -9.96110 -9.75653 -9.55220 -9.33981 -8.95682 -8.78633 -8.63042 -8.43242 -6.88043 -5.89412 -3.32219 0.06217 0.52163 1.62566 1.77960 2.67322 3.13722 3.35221 3.48560 3.51621 3.53996 3.67225 3.91418 4.16492 4.40711 4.50114 4.54153 4.58573 4.62232 4.70948 4.74846 4.84908 4.97219 5.04226 5.42805 5.45821 5.53726 5.62544 5.66340 5.74364 5.77734 5.81231 5.87016 5.94966 6.02228 6.03808 6.11190 6.14898 6.17467 6.21859 6.31971 6.52115 6.54736 6.73244 6.80660 7.56976 7.60826 7.98310 8.13556 8.28872 8.45749 8.99960 9.78329 10.11629 11.26215 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018732 B = 0.002132 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.430425 B =13131.988138 C =13970.071904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.346 6.346 3 C 0.044 3.956 4 C 0.132 3.868 5 N -0.591 5.591 6 C -0.259 4.259 7 H 0.077 0.923 8 C 0.046 3.954 9 N -0.893 5.893 10 Si 0.874 3.126 11 H -0.286 1.286 12 H -0.303 1.303 13 H -0.272 1.272 14 C 0.140 3.860 15 C 0.095 3.905 16 N -0.718 5.718 17 C 0.556 3.444 18 O -0.534 6.534 19 C -0.145 4.145 20 C -0.038 4.038 21 C -0.128 4.128 22 C 0.103 3.897 23 C -0.028 4.028 24 C 0.034 3.966 25 N -0.207 5.207 26 N -0.009 5.009 27 N -0.399 5.399 28 C 0.099 3.901 29 H 0.031 0.969 30 H 0.078 0.922 31 H 0.025 0.975 32 H 0.027 0.973 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.261 0.739 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.395 0.605 42 H 0.144 0.856 43 H 0.138 0.862 44 H 0.154 0.846 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.778 20.557 -14.736 25.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C -0.036 4.036 4 C 0.006 3.994 5 N -0.312 5.312 6 C -0.387 4.387 7 H 0.094 0.906 8 C -0.155 4.155 9 N -0.533 5.533 10 Si 0.704 3.296 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.197 1.197 14 C 0.012 3.988 15 C -0.030 4.030 16 N -0.369 5.369 17 C 0.342 3.658 18 O -0.412 6.412 19 C -0.152 4.152 20 C -0.060 4.060 21 C -0.150 4.150 22 C -0.019 4.019 23 C -0.151 4.151 24 C 0.011 3.989 25 N -0.086 5.086 26 N 0.011 4.989 27 N -0.194 5.194 28 C -0.043 4.043 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.230 0.770 42 H 0.161 0.839 43 H 0.156 0.844 44 H 0.172 0.828 45 H 0.102 0.898 46 H 0.116 0.884 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.283 20.306 -15.728 25.717 hybrid contribution 1.442 0.688 1.406 2.128 sum 2.725 20.994 -14.322 25.559 Atomic orbital electron populations 1.22651 0.83688 1.01930 0.98346 1.88295 1.16998 1.26284 1.94799 1.23328 0.97247 0.85296 0.97704 1.21396 0.90504 0.96557 0.90922 1.43891 1.76172 1.03861 1.07288 1.18557 1.38608 0.79509 1.02042 0.90582 1.25319 0.97814 0.94807 0.97554 1.69893 1.44590 1.08358 1.30462 0.86993 0.81134 0.79251 0.82183 1.21464 1.23134 1.19656 1.21007 0.93717 0.94482 0.89568 1.22463 1.00844 0.94173 0.85484 1.45978 1.14140 1.51506 1.25320 1.17967 0.84969 0.80733 0.82100 1.90814 1.22130 1.51799 1.76442 1.19815 0.94579 1.03159 0.97659 1.20968 0.95544 0.93191 0.96285 1.19686 0.98354 1.03069 0.93892 1.19496 0.97185 0.95457 0.89748 1.19802 0.90962 1.05961 0.98388 1.20607 1.00105 0.90394 0.87786 1.74884 1.24650 1.07107 1.01962 1.81653 0.86137 1.14010 1.17125 1.50127 1.11725 1.39391 1.18107 1.22031 0.85539 0.96253 1.00430 0.95051 0.90295 0.95642 0.95470 0.94295 0.91777 0.92705 0.92921 0.92006 0.93943 0.91967 0.90813 0.77024 0.83864 0.84414 0.82804 0.89817 0.88393 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.35 -7.80 10.18 -35.23 -0.36 -8.16 16 3 C 0.04 0.84 6.28 37.16 0.23 1.08 16 4 C 0.13 2.73 4.98 -4.04 -0.02 2.71 16 5 N -0.59 -13.09 2.06 -173.24 -0.36 -13.44 16 6 C -0.26 -6.98 9.42 -15.06 -0.14 -7.12 16 7 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 8 C 0.05 1.30 5.30 -17.43 -0.09 1.21 16 9 N -0.89 -27.16 13.97 55.49 0.78 -26.38 16 10 Si 0.87 21.64 25.07 -169.99 -4.26 17.38 16 11 H -0.29 -7.01 6.66 56.52 0.38 -6.63 16 12 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.14 2.40 5.83 -4.05 -0.02 2.38 16 15 C 0.10 1.59 5.99 -4.04 -0.02 1.57 16 16 N -0.72 -9.16 5.50 -61.29 -0.34 -9.50 16 17 C 0.56 7.87 7.76 -12.39 -0.10 7.77 16 18 O -0.53 -9.86 16.31 5.31 0.09 -9.78 16 19 C -0.15 -1.60 5.87 -105.03 -0.62 -2.21 16 20 C -0.04 -0.28 9.46 -39.54 -0.37 -0.66 16 21 C -0.13 -0.87 9.97 -39.89 -0.40 -1.27 16 22 C 0.10 0.97 6.93 -84.10 -0.58 0.39 16 23 C -0.03 -0.33 7.26 -84.77 -0.62 -0.94 16 24 C 0.03 0.40 9.65 -38.76 -0.37 0.03 16 25 N -0.21 -2.69 12.40 32.15 0.40 -2.29 16 26 N -0.01 -0.10 13.72 60.35 0.83 0.72 16 27 N -0.40 -3.42 4.11 -65.43 -0.27 -3.69 16 28 C 0.10 0.32 11.52 59.85 0.69 1.01 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.71 6.30 -51.93 -0.33 0.38 16 34 H 0.06 1.50 3.28 -51.93 -0.17 1.33 16 35 H 0.05 0.95 7.87 -51.93 -0.41 0.54 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 38 H 0.04 0.61 7.86 -51.93 -0.41 0.20 16 39 H 0.06 1.11 6.30 -51.93 -0.33 0.79 16 40 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.40 3.56 6.47 -40.82 -0.26 3.29 16 42 H 0.14 0.67 6.36 -52.48 -0.33 0.33 16 43 H 0.14 0.48 8.06 -52.48 -0.42 0.05 16 44 H 0.15 1.88 7.62 -52.49 -0.40 1.48 16 45 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 LS Contribution 391.10 15.07 5.89 5.89 Total: -1.00 -36.81 391.10 -5.37 -42.18 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.45 Total: -0.53 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -1.32 Total: 7.60 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 1.04 Total: -54.59 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.27 Total: -17.93 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.26 Total: 17.38 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.81 -5.37 -42.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279044130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.876 kcal (2) G-P(sol) polarization free energy of solvation -36.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds