Wall clock time and date at job start Wed Apr 1 2020 06:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 O 1.42908 * 109.46767 * 65.00309 * 4 3 2 6 6 C 1.42901 * 113.99991 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47178 * 180.02562 * 6 5 4 8 8 N 1.46492 * 109.47132 * 64.99812 * 7 6 5 9 9 C 1.36942 * 119.99784 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00309 * 359.97438 * 9 8 7 11 11 C 1.38816 * 119.99851 * 180.02562 * 9 8 7 12 12 N 1.31620 * 120.00014 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99855 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47141 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46676 * 120.00167 * 13 11 9 16 16 H 1.48499 * 109.46961 * 239.99738 * 13 11 9 17 17 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 18 18 O 1.21283 * 119.99750 * 180.02562 * 17 2 1 19 19 C 1.50702 * 119.99928 * 0.28128 * 17 2 1 20 20 N 1.46491 * 109.46957 * 179.72354 * 19 17 2 21 21 N 1.39836 * 125.38961 * 269.69002 * 20 19 17 22 22 C 1.30234 * 110.09780 * 179.83752 * 21 20 19 23 23 C 1.45858 * 107.65499 * 0.41731 * 22 21 20 24 24 C 1.39993 * 134.26435 * 179.71875 * 23 22 21 25 25 C 1.37014 * 118.15997 * 180.02562 * 24 23 22 26 26 C 1.38803 * 119.64641 * 359.97438 * 25 24 23 27 27 N 1.31508 * 121.58988 * 359.97438 * 26 25 24 28 28 C 1.32767 * 121.47131 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 30 30 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 31 31 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 32 32 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 33 33 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 34 34 H 1.08999 * 109.47279 * 184.99887 * 4 3 2 35 35 H 1.09001 * 109.47410 * 305.00590 * 4 3 2 36 36 H 1.08998 * 109.46739 * 300.00029 * 6 5 4 37 37 H 1.08997 * 109.47178 * 59.99650 * 6 5 4 38 38 H 1.09001 * 109.46942 * 185.00206 * 7 6 5 39 39 H 1.08999 * 109.46667 * 305.00076 * 7 6 5 40 40 H 0.96997 * 120.00397 * 359.97438 * 8 7 6 41 41 H 0.96997 * 119.99638 * 180.02562 * 12 11 9 42 42 H 1.09004 * 109.46965 * 299.72211 * 19 17 2 43 43 H 1.08994 * 109.46990 * 59.72065 * 19 17 2 44 44 H 1.08001 * 126.17486 * 180.15318 * 22 21 20 45 45 H 1.08003 * 120.92029 * 0.03842 * 24 23 22 46 46 H 1.07995 * 120.18073 * 180.02562 * 25 24 23 47 47 H 1.08000 * 119.20717 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 8 1.2060 1.9934 -2.0815 6 6 1.3324 2.4162 -3.4406 7 6 -0.0566 2.6905 -4.0207 8 7 -0.6646 3.8227 -3.3175 9 6 -1.9169 4.2529 -3.6667 10 1 -2.4561 3.7578 -4.4607 11 6 -2.4928 5.3261 -3.0007 12 7 -1.8351 5.9305 -2.0341 13 14 -4.2008 5.9135 -3.4775 14 1 -4.7220 5.0730 -4.5853 15 1 -5.1066 5.8046 -2.3058 16 1 -4.1318 7.3293 -3.9199 17 6 2.1390 -1.1672 0.0005 18 8 3.3518 -1.1671 0.0010 19 6 1.3855 -2.4723 -0.0053 20 7 2.3376 -3.5857 -0.0102 21 7 2.8593 -4.2001 -1.1528 22 6 3.6797 -5.1530 -0.8135 23 6 3.7189 -5.2049 0.6436 24 6 4.3956 -6.0013 1.5751 25 6 4.1840 -5.7599 2.9071 26 6 3.3173 -4.7464 3.2919 27 7 2.6884 -4.0046 2.4066 28 6 2.8536 -4.1919 1.1026 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3632 -0.8900 -0.5138 32 1 1.6083 2.0285 0.5137 33 1 3.1499 1.1385 0.5139 34 1 3.0732 2.6064 -1.4438 35 1 2.9643 0.9131 -1.9815 36 1 1.9300 3.3268 -3.4838 37 1 1.8207 1.6333 -4.0208 38 1 0.0327 2.9268 -5.0810 39 1 -0.6829 1.8071 -3.8967 40 1 -0.1805 4.2672 -2.6041 41 1 -2.2377 6.6802 -1.5685 42 1 0.7588 -2.5340 0.8844 43 1 0.7590 -2.5261 -0.8955 44 1 4.2284 -5.7924 -1.4891 45 1 5.0661 -6.7842 1.2526 46 1 4.6896 -6.3544 3.6536 47 1 3.1554 -4.5625 4.3437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279430076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:14 Heat of formation + Delta-G solvation = 51.807980 kcal Electronic energy + Delta-G solvation = -29747.551079 eV Core-core repulsion = 25547.410518 eV Total energy + Delta-G solvation = -4200.140561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.86575 -39.99496 -38.36121 -37.70565 -35.63770 -34.40086 -34.12331 -32.23744 -31.48725 -30.46396 -30.09366 -27.86124 -27.46577 -26.25482 -24.28729 -23.52429 -23.28596 -22.81181 -21.28789 -21.12098 -19.45577 -17.99971 -17.57208 -17.36263 -17.15057 -16.52297 -16.41684 -16.20882 -15.79993 -15.43689 -15.19238 -14.68056 -14.39453 -14.32892 -13.99541 -13.71456 -13.59563 -13.23218 -13.09199 -12.94308 -12.89601 -12.77516 -12.68155 -12.40335 -12.33904 -11.79787 -11.65155 -11.36220 -11.27871 -11.04707 -10.91010 -10.80882 -10.48798 -10.06518 -9.98156 -9.79086 -9.70203 -9.29967 -9.23234 -8.87220 -8.72899 -8.59767 -6.87687 -5.73040 -3.01070 0.46897 0.98403 1.72229 2.16714 2.41623 2.91597 3.44445 3.48257 3.50005 3.52343 3.84622 3.96285 4.00857 4.27439 4.32194 4.45138 4.61916 4.64453 4.78542 4.82952 5.02823 5.11195 5.15738 5.19718 5.26230 5.29768 5.45555 5.50310 5.56273 5.58848 5.63832 5.72922 5.77413 5.84704 5.91220 5.92754 6.01184 6.17778 6.35483 6.38442 6.48539 6.61798 6.75589 7.14413 7.22381 7.58847 7.60853 7.72518 7.97906 8.45612 9.57222 10.15907 10.51988 11.49819 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021766 B = 0.001896 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.094860 B =14766.447262 C =14996.605449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.600 5.600 3 C 0.121 3.879 4 C 0.046 3.954 5 O -0.371 6.371 6 C 0.059 3.941 7 C 0.155 3.845 8 N -0.727 5.727 9 C -0.237 4.237 10 H 0.070 0.930 11 C -0.015 4.015 12 N -0.932 5.932 13 Si 0.906 3.094 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.292 1.292 17 C 0.499 3.501 18 O -0.533 6.533 19 C 0.126 3.874 20 N -0.376 5.376 21 N -0.226 5.226 22 C 0.084 3.916 23 C -0.228 4.228 24 C 0.006 3.994 25 C -0.220 4.220 26 C 0.169 3.831 27 N -0.502 5.502 28 C 0.325 3.675 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.048 0.952 37 H 0.042 0.958 38 H 0.032 0.968 39 H 0.025 0.975 40 H 0.387 0.613 41 H 0.253 0.747 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.202 0.798 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.098 -25.913 9.635 30.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.333 5.333 3 C -0.001 4.001 4 C -0.033 4.033 5 O -0.290 6.290 6 C -0.018 4.018 7 C 0.027 3.973 8 N -0.372 5.372 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.211 4.211 12 N -0.581 5.581 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 C 0.284 3.716 18 O -0.409 6.409 19 C 0.001 3.999 20 N -0.165 5.165 21 N -0.037 5.037 22 C -0.115 4.115 23 C -0.238 4.238 24 C -0.022 4.022 25 C -0.242 4.242 26 C 0.000 4.000 27 N -0.216 5.216 28 C 0.086 3.914 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.043 0.957 40 H 0.221 0.779 41 H 0.063 0.937 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.219 0.781 45 H 0.157 0.843 46 H 0.158 0.842 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.132 -24.443 8.834 28.683 hybrid contribution 0.305 -0.305 0.196 0.474 sum 12.437 -24.748 9.030 29.132 Atomic orbital electron populations 1.22010 0.78157 1.04988 1.01934 1.47727 1.07767 1.05303 1.72528 1.21568 0.98241 0.84539 0.95799 1.22840 0.87596 0.99046 0.93771 1.87984 1.27768 1.87518 1.25707 1.22777 0.99267 0.97435 0.82327 1.20682 0.90205 0.91864 0.94509 1.42296 1.17749 1.34842 1.42294 1.19285 0.92612 1.10675 1.14281 0.91221 1.24737 0.98635 0.98942 0.98797 1.69683 1.37641 1.24881 1.25874 0.86126 0.84324 0.78307 0.77494 1.20610 1.21909 1.21948 1.20782 0.88387 0.85530 0.76864 1.90720 1.13634 1.87087 1.49460 1.21500 0.89544 0.82103 1.06763 1.47612 1.39596 1.28977 1.00354 1.76767 1.11407 1.08386 1.07127 1.25056 0.97197 0.96568 0.92723 1.20510 1.05710 1.02875 0.94750 1.20770 0.94191 0.95482 0.91787 1.21641 1.03735 1.02256 0.96584 1.22744 0.89800 0.89078 0.98381 1.66743 1.26821 1.28986 0.99068 1.18934 0.92899 0.91528 0.88019 0.92343 0.88236 0.91501 0.88884 0.88815 0.92547 0.93636 0.93413 0.94026 0.95092 0.95674 0.77941 0.93660 0.85735 0.85661 0.78132 0.84269 0.84159 0.81821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 10.07 59.85 0.60 1.40 16 2 N -0.60 -7.78 2.84 -181.57 -0.52 -8.30 16 3 C 0.12 1.62 5.81 -4.04 -0.02 1.59 16 4 C 0.05 0.67 6.28 37.16 0.23 0.90 16 5 O -0.37 -6.47 9.11 -35.23 -0.32 -6.79 16 6 C 0.06 1.02 6.07 37.16 0.23 1.24 16 7 C 0.16 3.21 6.64 -4.05 -0.03 3.19 16 8 N -0.73 -18.83 5.55 -59.91 -0.33 -19.16 16 9 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 12 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 13 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 C 0.50 7.02 7.74 -10.98 -0.09 6.94 16 18 O -0.53 -9.46 16.01 5.55 0.09 -9.38 16 19 C 0.13 1.44 5.44 -5.20 -0.03 1.41 16 20 N -0.38 -4.93 3.13 -61.61 -0.19 -5.12 16 21 N -0.23 -2.86 12.40 31.85 0.39 -2.47 16 22 C 0.08 0.80 12.29 -15.18 -0.19 0.62 16 23 C -0.23 -2.37 6.38 -105.18 -0.67 -3.04 16 24 C 0.01 0.04 10.18 -39.37 -0.40 -0.36 16 25 C -0.22 -1.43 10.04 -39.82 -0.40 -1.82 16 26 C 0.17 1.40 11.15 -17.48 -0.19 1.20 16 27 N -0.50 -6.01 10.40 -12.34 -0.13 -6.14 16 28 C 0.32 4.15 7.97 -156.11 -1.24 2.91 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.10 1.37 7.11 -51.93 -0.37 1.00 16 31 H 0.07 0.60 6.43 -51.93 -0.33 0.26 16 32 H 0.09 1.20 8.07 -51.93 -0.42 0.78 16 33 H 0.09 1.24 7.42 -51.93 -0.39 0.85 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.39 10.62 7.67 -40.82 -0.31 10.31 16 41 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.12 1.17 8.11 -51.93 -0.42 0.75 16 43 H 0.13 1.19 7.40 -51.93 -0.38 0.81 16 44 H 0.20 1.01 8.06 -52.49 -0.42 0.58 16 45 H 0.14 0.53 8.06 -52.48 -0.42 0.10 16 46 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 47 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 402.49 15.07 6.07 6.07 Total: -1.00 -38.18 402.49 -8.51 -46.69 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.82 Total: 6.03 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -2.45 Total: 8.76 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -0.05 Total: -68.88 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.23 Total: -16.16 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -38.18 -8.51 -46.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279430076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.497 kcal (2) G-P(sol) polarization free energy of solvation -38.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds