Wall clock time and date at job start Wed Apr 1 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 O 1.42908 * 109.46767 * 65.00309 * 4 3 2 6 6 C 1.42901 * 113.99991 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47178 * 180.02562 * 6 5 4 8 8 N 1.46492 * 109.47132 * 64.99812 * 7 6 5 9 9 C 1.36942 * 119.99784 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00309 * 359.97438 * 9 8 7 11 11 C 1.38816 * 119.99851 * 180.02562 * 9 8 7 12 12 N 1.31620 * 120.00014 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99855 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47141 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46676 * 120.00167 * 13 11 9 16 16 H 1.48499 * 109.46961 * 239.99738 * 13 11 9 17 17 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 18 18 O 1.21283 * 119.99750 * 180.02562 * 17 2 1 19 19 C 1.50702 * 119.99928 * 0.28128 * 17 2 1 20 20 N 1.46491 * 109.46957 * 179.72354 * 19 17 2 21 21 N 1.39836 * 125.38961 * 269.69002 * 20 19 17 22 22 C 1.30234 * 110.09780 * 179.83752 * 21 20 19 23 23 C 1.45858 * 107.65499 * 0.41731 * 22 21 20 24 24 C 1.39993 * 134.26435 * 179.71875 * 23 22 21 25 25 C 1.37014 * 118.15997 * 180.02562 * 24 23 22 26 26 C 1.38803 * 119.64641 * 359.97438 * 25 24 23 27 27 N 1.31508 * 121.58988 * 359.97438 * 26 25 24 28 28 C 1.32767 * 121.47131 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 30 30 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 31 31 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 32 32 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 33 33 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 34 34 H 1.08999 * 109.47279 * 184.99887 * 4 3 2 35 35 H 1.09001 * 109.47410 * 305.00590 * 4 3 2 36 36 H 1.08998 * 109.46739 * 300.00029 * 6 5 4 37 37 H 1.08997 * 109.47178 * 59.99650 * 6 5 4 38 38 H 1.09001 * 109.46942 * 185.00206 * 7 6 5 39 39 H 1.08999 * 109.46667 * 305.00076 * 7 6 5 40 40 H 0.96997 * 120.00397 * 359.97438 * 8 7 6 41 41 H 0.96997 * 119.99638 * 180.02562 * 12 11 9 42 42 H 1.09004 * 109.46965 * 299.72211 * 19 17 2 43 43 H 1.08994 * 109.46990 * 59.72065 * 19 17 2 44 44 H 1.08001 * 126.17486 * 180.15318 * 22 21 20 45 45 H 1.08003 * 120.92029 * 0.03842 * 24 23 22 46 46 H 1.07995 * 120.18073 * 180.02562 * 25 24 23 47 47 H 1.08000 * 119.20717 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 8 1.2060 1.9934 -2.0815 6 6 1.3324 2.4162 -3.4406 7 6 -0.0566 2.6905 -4.0207 8 7 -0.6646 3.8227 -3.3175 9 6 -1.9169 4.2529 -3.6667 10 1 -2.4561 3.7578 -4.4607 11 6 -2.4928 5.3261 -3.0007 12 7 -1.8351 5.9305 -2.0341 13 14 -4.2008 5.9135 -3.4775 14 1 -4.7220 5.0730 -4.5853 15 1 -5.1066 5.8046 -2.3058 16 1 -4.1318 7.3293 -3.9199 17 6 2.1390 -1.1672 0.0005 18 8 3.3518 -1.1671 0.0010 19 6 1.3855 -2.4723 -0.0053 20 7 2.3376 -3.5857 -0.0102 21 7 2.8593 -4.2001 -1.1528 22 6 3.6797 -5.1530 -0.8135 23 6 3.7189 -5.2049 0.6436 24 6 4.3956 -6.0013 1.5751 25 6 4.1840 -5.7599 2.9071 26 6 3.3173 -4.7464 3.2919 27 7 2.6884 -4.0046 2.4066 28 6 2.8536 -4.1919 1.1026 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3632 -0.8900 -0.5138 32 1 1.6083 2.0285 0.5137 33 1 3.1499 1.1385 0.5139 34 1 3.0732 2.6064 -1.4438 35 1 2.9643 0.9131 -1.9815 36 1 1.9300 3.3268 -3.4838 37 1 1.8207 1.6333 -4.0208 38 1 0.0327 2.9268 -5.0810 39 1 -0.6829 1.8071 -3.8967 40 1 -0.1805 4.2672 -2.6041 41 1 -2.2377 6.6802 -1.5685 42 1 0.7588 -2.5340 0.8844 43 1 0.7590 -2.5261 -0.8955 44 1 4.2284 -5.7924 -1.4891 45 1 5.0661 -6.7842 1.2526 46 1 4.6896 -6.3544 3.6536 47 1 3.1554 -4.5625 4.3437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279430076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:13 Heat of formation + Delta-G solvation = 24.957678 kcal Electronic energy + Delta-G solvation = -29748.715395 eV Core-core repulsion = 25547.410518 eV Total energy + Delta-G solvation = -4201.304877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.57753 -41.05163 -39.18552 -38.91515 -36.89346 -36.17123 -34.91520 -33.47654 -32.87160 -31.43893 -31.03575 -29.42129 -28.46091 -27.29145 -25.52602 -24.92823 -24.27876 -23.57317 -22.81484 -22.06845 -20.43573 -19.24665 -18.78657 -18.57183 -18.09811 -17.59835 -17.46925 -17.08186 -16.86572 -16.76731 -16.30224 -16.02556 -15.70621 -15.32496 -15.01510 -14.98015 -14.71263 -14.53893 -14.32183 -14.12488 -13.89745 -13.55306 -13.53776 -13.48245 -13.26870 -13.21520 -13.06352 -12.79409 -12.73766 -12.55254 -12.11345 -12.01653 -11.93299 -11.78954 -11.69520 -11.08494 -10.97558 -10.56597 -10.44863 -10.04230 -9.81064 -9.30936 -8.98009 -7.92686 -5.21361 -0.16129 0.35713 0.98415 1.35507 1.46603 1.48377 1.49161 1.59383 1.93805 2.57256 2.71022 2.83546 3.20651 3.28553 3.32767 3.41175 3.71264 3.84421 3.93205 3.97520 3.99568 4.06303 4.09956 4.19440 4.23870 4.29097 4.40432 4.43286 4.46452 4.47742 4.61091 4.64304 4.65835 4.75447 4.82573 4.95271 5.02346 5.11967 5.23660 5.33561 5.33984 5.50282 5.57830 5.81334 6.16581 6.27543 6.31308 6.41639 6.89891 6.95977 7.35503 8.10791 8.35617 9.31002 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021766 B = 0.001896 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.094860 B =14766.447262 C =14996.605449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.599 5.599 3 C 0.122 3.878 4 C 0.050 3.950 5 O -0.388 6.388 6 C 0.066 3.934 7 C 0.152 3.848 8 N -0.739 5.739 9 C -0.244 4.244 10 H 0.076 0.924 11 C -0.077 4.077 12 N -0.968 5.968 13 Si 0.974 3.026 14 H -0.266 1.266 15 H -0.293 1.293 16 H -0.294 1.294 17 C 0.497 3.503 18 O -0.576 6.576 19 C 0.129 3.871 20 N -0.394 5.394 21 N -0.270 5.270 22 C 0.095 3.905 23 C -0.249 4.249 24 C 0.009 3.991 25 C -0.213 4.213 26 C 0.159 3.841 27 N -0.539 5.539 28 C 0.291 3.709 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.025 0.975 40 H 0.375 0.625 41 H 0.250 0.750 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.242 0.758 45 H 0.178 0.822 46 H 0.180 0.820 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.470 -28.235 9.886 32.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.331 5.331 3 C -0.001 4.001 4 C -0.028 4.028 5 O -0.307 6.307 6 C -0.010 4.010 7 C 0.026 3.974 8 N -0.383 5.383 9 C -0.375 4.375 10 H 0.094 0.906 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.190 1.190 15 H -0.220 1.220 16 H -0.221 1.221 17 C 0.284 3.716 18 O -0.455 6.455 19 C 0.004 3.996 20 N -0.184 5.184 21 N -0.081 5.081 22 C -0.104 4.104 23 C -0.259 4.259 24 C -0.019 4.019 25 C -0.234 4.234 26 C -0.009 4.009 27 N -0.255 5.255 28 C 0.053 3.947 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.043 0.957 40 H 0.207 0.793 41 H 0.059 0.941 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.258 0.742 45 H 0.195 0.805 46 H 0.197 0.803 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 12.492 -26.805 9.064 30.931 hybrid contribution 0.296 0.294 0.195 0.461 sum 12.789 -26.510 9.259 30.856 Atomic orbital electron populations 1.22072 0.76957 1.04697 1.03130 1.47828 1.08493 1.04980 1.71805 1.21531 0.98491 0.85004 0.95104 1.22883 0.86652 0.99238 0.94000 1.87962 1.29318 1.87601 1.25835 1.22648 0.97234 0.98392 0.82761 1.20843 0.91763 0.90028 0.94762 1.42480 1.17308 1.36074 1.42390 1.19687 0.93536 1.10409 1.13905 0.90604 1.25576 1.02573 0.99536 0.99204 1.69841 1.39346 1.25476 1.27251 0.85059 0.79699 0.77542 0.77359 1.19031 1.21998 1.22136 1.21294 0.88019 0.86456 0.75788 1.90682 1.15515 1.87727 1.51594 1.21554 0.89379 0.80605 1.08069 1.47720 1.40431 1.29485 1.00753 1.76693 1.13420 1.10145 1.07809 1.25793 0.95732 0.95557 0.93279 1.20905 1.06163 1.03274 0.95525 1.21295 0.93648 0.95394 0.91534 1.22098 1.02559 1.01437 0.97288 1.23420 0.89351 0.88906 0.99193 1.66743 1.28664 1.30800 0.99307 1.19348 0.94150 0.92728 0.88431 0.90423 0.90907 0.89290 0.88581 0.88836 0.91584 0.94227 0.93491 0.91299 0.93990 0.95698 0.79279 0.94092 0.84255 0.84217 0.74224 0.80473 0.80308 0.79134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.61 10.07 127.77 1.29 2.90 16 2 N -0.60 -15.74 2.84 -846.74 -2.40 -18.14 16 3 C 0.12 3.32 5.81 86.38 0.50 3.82 16 4 C 0.05 1.47 6.28 71.98 0.45 1.92 16 5 O -0.39 -13.53 9.11 -148.98 -1.36 -14.89 16 6 C 0.07 2.25 6.07 71.98 0.44 2.69 16 7 C 0.15 6.23 6.64 86.38 0.57 6.80 16 8 N -0.74 -38.46 5.55 -343.46 -1.91 -40.37 16 9 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 10 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 11 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 12 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 13 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 16 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 17 C 0.50 14.35 7.74 87.66 0.68 15.03 16 18 O -0.58 -21.22 16.01 -3.04 -0.05 -21.27 16 19 C 0.13 2.99 5.44 85.64 0.47 3.46 16 20 N -0.39 -10.55 3.13 -348.82 -1.09 -11.64 16 21 N -0.27 -6.90 12.40 -53.15 -0.66 -7.56 16 22 C 0.09 1.74 12.29 86.90 1.07 2.80 16 23 C -0.25 -4.90 6.38 -20.23 -0.13 -5.03 16 24 C 0.01 0.11 10.18 22.41 0.23 0.34 16 25 C -0.21 -2.11 10.04 22.12 0.22 -1.89 16 26 C 0.16 2.38 11.15 84.88 0.95 3.33 16 27 N -0.54 -12.88 10.40 -192.95 -2.01 -14.89 16 28 C 0.29 7.49 7.97 134.12 1.07 8.56 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 2.04 7.11 -2.39 -0.02 2.02 16 31 H 0.09 1.53 6.43 -2.39 -0.02 1.51 16 32 H 0.10 2.54 8.07 -2.39 -0.02 2.52 16 33 H 0.09 2.56 7.42 -2.38 -0.02 2.54 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.38 20.98 7.67 -92.71 -0.71 20.27 16 41 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 42 H 0.14 2.66 8.11 -2.38 -0.02 2.64 16 43 H 0.14 2.67 7.40 -2.39 -0.02 2.65 16 44 H 0.24 1.86 8.06 -2.91 -0.02 1.84 16 45 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 46 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 47 H 0.19 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -84.85 402.49 2.23 -82.62 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.28 Total: 29.48 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 9.11 Total: 27.80 kcal Atomic # 7 Polarization: -144.38 SS G_CDS: -7.78 Total: -152.17 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.41 Total: -36.16 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -84.85 2.23 -82.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279430076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.580 kcal (2) G-P(sol) polarization free energy of solvation -84.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds