Wall clock time and date at job start Wed Apr 1 2020 05:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28442 * 125.18950 * 2 1 4 4 C 1.30869 * 110.92401 * 180.02562 * 3 2 1 5 5 C 1.39671 * 107.86513 * 359.77314 * 4 3 2 6 6 C 1.36598 * 125.18893 * 180.02562 * 2 1 3 7 7 C 1.47164 * 126.88411 * 359.94122 * 6 2 1 8 8 O 1.21623 * 119.99802 * 2.96752 * 7 6 2 9 9 N 1.34781 * 119.99776 * 182.96646 * 7 6 2 10 10 C 1.46499 * 119.99793 * 174.89287 * 9 7 6 11 11 C 1.50694 * 109.47433 * 179.97438 * 10 9 7 12 12 C 1.29824 * 118.55662 * 94.99507 * 11 10 9 13 13 C 1.50139 * 123.28747 * 180.11446 * 12 11 10 14 14 N 1.46845 * 110.27672 * 343.21667 * 13 12 11 15 15 C 1.46902 * 110.99462 * 287.53321 * 14 13 12 16 16 C 1.50693 * 109.47502 * 293.95206 * 15 14 13 17 17 O 1.21297 * 120.00064 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00114 * 180.02562 * 16 15 14 19 19 C 1.37093 * 119.99858 * 180.02562 * 18 16 15 20 20 H 1.07994 * 120.00394 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99830 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99972 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00008 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.46951 * 90.00181 * 23 21 19 25 25 H 1.48501 * 109.46868 * 210.00346 * 23 21 19 26 26 H 1.48502 * 109.47296 * 330.00090 * 23 21 19 27 27 C 1.47234 * 110.20774 * 50.92181 * 14 13 12 28 28 C 1.50307 * 118.55249 * 275.23781 * 11 10 9 29 29 H 1.09000 * 109.47240 * 265.10895 * 1 2 3 30 30 H 1.09004 * 109.46759 * 25.10812 * 1 2 3 31 31 H 1.08996 * 109.47196 * 145.10713 * 1 2 3 32 32 H 1.08006 * 126.06748 * 180.02562 * 4 3 2 33 33 H 1.07996 * 127.32268 * 180.22592 * 5 4 3 34 34 H 0.96995 * 120.00397 * 354.89162 * 9 7 6 35 35 H 1.09001 * 109.47344 * 59.99723 * 10 9 7 36 36 H 1.08998 * 109.47428 * 300.00216 * 10 9 7 37 37 H 1.08003 * 118.35422 * 0.40507 * 12 11 10 38 38 H 1.09002 * 109.33821 * 103.46020 * 13 12 11 39 39 H 1.09005 * 109.33826 * 223.12987 * 13 12 11 40 40 H 1.09003 * 109.46975 * 53.95777 * 15 14 13 41 41 H 1.09000 * 109.46634 * 173.94973 * 15 14 13 42 42 H 0.97001 * 119.99860 * 0.02562 * 18 16 15 43 43 H 0.97005 * 119.99813 * 180.02562 * 22 21 19 44 44 H 1.09001 * 109.63395 * 50.89048 * 27 14 13 45 45 H 1.08994 * 109.64127 * 171.29379 * 27 14 13 46 46 H 1.09000 * 109.55880 * 43.50920 * 28 11 10 47 47 H 1.08995 * 109.24833 * 283.69245 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7272 -0.0005 5 6 3.5612 -0.6667 0.0043 6 6 2.2521 -1.1164 -0.0005 7 6 1.7992 -2.5165 0.0001 8 8 0.6111 -2.7713 -0.0534 9 7 2.7009 -3.5165 0.0599 10 6 2.2482 -4.9052 0.1734 11 6 3.4440 -5.8210 0.2209 12 6 3.8967 -6.1909 1.3801 13 6 5.0812 -7.0975 1.5510 14 7 5.3745 -7.7945 0.2922 15 6 4.3656 -8.8253 0.0139 16 6 4.4566 -9.9113 1.0547 17 8 5.2807 -9.8341 1.9414 18 7 3.6225 -10.9686 1.0002 19 6 3.7050 -11.9563 1.9473 20 1 4.4386 -11.8875 2.7368 21 6 2.8454 -13.0466 1.8908 22 7 2.9241 -13.9931 2.7990 23 14 1.5768 -13.1660 0.5248 24 1 2.1641 -13.8844 -0.6345 25 1 0.3882 -13.9080 1.0167 26 1 1.1698 -11.8005 0.1065 27 6 5.4615 -6.8286 -0.8156 28 6 4.0634 -6.2617 -1.0758 29 1 -0.3634 -0.0876 1.0239 30 1 -0.3633 0.9306 -0.4361 31 1 -0.3633 -0.8429 -0.5878 32 1 4.3049 1.4166 -0.0003 33 1 4.4594 -1.2663 0.0087 34 1 3.6495 -3.3167 0.0277 35 1 1.6315 -5.1579 -0.6891 36 1 1.6632 -5.0233 1.0854 37 1 3.3933 -5.8321 2.2657 38 1 5.9482 -6.5068 1.8469 39 1 4.8641 -7.8328 2.3259 40 1 3.3719 -8.3780 0.0415 41 1 4.5447 -9.2518 -0.9730 42 1 2.9638 -11.0306 0.2908 43 1 2.3242 -14.7544 2.7593 44 1 6.1399 -6.0198 -0.5439 45 1 5.8293 -7.3299 -1.7107 46 1 4.1374 -5.4106 -1.7527 47 1 3.4387 -7.0313 -1.5291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279511057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:14 Heat of formation + Delta-G solvation = 45.718956 kcal Electronic energy + Delta-G solvation = -29776.931538 eV Core-core repulsion = 25576.526937 eV Total energy + Delta-G solvation = -4200.404601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -42.92053 -40.25572 -39.50684 -37.88932 -35.69121 -34.03137 -33.73697 -32.84580 -31.69398 -31.20558 -30.92272 -28.61284 -27.52442 -26.43481 -24.49936 -23.74749 -23.23958 -22.06534 -21.61589 -20.52045 -19.50190 -18.82260 -18.40388 -17.17365 -16.72047 -16.62264 -16.42500 -16.09995 -15.56013 -15.32674 -15.03505 -14.94193 -14.54038 -14.36020 -14.18400 -14.01299 -13.90327 -13.80225 -13.31945 -13.22060 -13.03958 -12.78127 -12.61666 -12.56771 -12.28364 -12.21141 -11.80923 -11.51195 -11.32287 -11.25494 -10.98062 -10.81087 -10.60211 -10.57077 -9.98743 -9.74080 -9.57090 -9.48927 -9.39067 -9.07836 -8.57144 -8.18938 -8.01765 -6.32154 -3.83460 0.83054 1.67246 2.08320 2.19807 2.79834 2.98572 3.01775 3.06068 3.14500 3.72357 3.91793 4.09389 4.11743 4.17145 4.45707 4.53304 4.67987 4.76718 4.78271 4.84679 4.97217 5.04587 5.10573 5.18011 5.20300 5.26852 5.29256 5.36446 5.40515 5.49601 5.57178 5.67392 5.78519 5.83539 5.86045 5.93422 5.95622 6.04505 6.14471 6.26870 6.31960 6.71073 6.99391 7.13742 7.21756 7.57349 7.59159 7.70990 8.13521 8.58976 8.94172 9.41569 9.82074 10.80873 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.002020 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.719811 B =13856.956205 C =14715.403779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.257 5.257 3 N -0.278 5.278 4 C -0.003 4.003 5 C -0.188 4.188 6 C -0.039 4.039 7 C 0.590 3.410 8 O -0.541 6.541 9 N -0.706 5.706 10 C 0.161 3.839 11 C -0.166 4.166 12 C -0.137 4.137 13 C 0.070 3.930 14 N -0.503 5.503 15 C 0.038 3.962 16 C 0.452 3.548 17 O -0.561 6.561 18 N -0.590 5.590 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.052 3.948 28 C -0.118 4.118 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.188 0.812 33 H 0.162 0.838 34 H 0.405 0.595 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.364 26.962 -10.113 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.045 5.045 3 N -0.112 5.112 4 C -0.178 4.178 5 C -0.217 4.217 6 C -0.168 4.168 7 C 0.375 3.625 8 O -0.419 6.419 9 N -0.358 5.358 10 C 0.039 3.961 11 C -0.166 4.166 12 C -0.158 4.158 13 C -0.058 4.058 14 N -0.225 5.225 15 C -0.094 4.094 16 C 0.238 3.762 17 O -0.443 6.443 18 N -0.230 5.230 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.705 3.295 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.076 4.076 28 C -0.156 4.156 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.205 0.795 33 H 0.179 0.821 34 H 0.240 0.760 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.107 0.893 39 H 0.133 0.867 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.178 27.249 -9.390 28.904 hybrid contribution -1.023 -0.398 -1.097 1.552 sum -3.201 26.851 -10.487 29.004 Atomic orbital electron populations 1.22357 0.72360 1.05747 1.05034 1.45648 1.08002 1.01686 1.49133 1.73249 1.04481 1.13610 1.19817 1.23606 0.93479 0.95008 1.05737 1.22283 0.95542 0.95718 1.08153 1.21409 0.91577 0.89658 1.14143 1.16924 0.85753 0.83103 0.76694 1.90805 1.16100 1.84560 1.50411 1.45760 1.09883 1.06015 1.74119 1.20383 0.94732 0.78115 1.02874 1.20810 0.98723 1.01541 0.95560 1.23253 0.98205 0.97004 0.97320 1.21411 0.94218 0.96024 0.94144 1.62301 1.46386 1.11641 1.02141 1.21947 0.94524 0.93385 0.99537 1.19660 0.84416 0.83928 0.88169 1.90528 1.37936 1.78244 1.37624 1.42217 1.32623 1.20742 1.27396 1.19417 1.19146 0.97684 1.07026 0.86252 1.25041 0.97946 0.95741 0.97452 1.69623 1.38442 1.10157 1.33874 0.86685 0.81908 0.78512 0.82370 1.19600 1.20201 1.19524 1.22328 0.94933 0.95261 0.95104 1.21046 0.98386 1.01296 0.94920 0.89615 0.88663 0.87314 0.79499 0.82089 0.75972 0.90602 0.90718 0.87181 0.89301 0.86698 0.92755 0.89331 0.79751 0.91623 0.90389 0.90139 0.90724 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.71 59.84 0.64 1.25 16 2 N -0.26 -2.50 3.75 -63.88 -0.24 -2.74 16 3 N -0.28 -2.76 11.90 30.59 0.36 -2.40 16 4 C 0.00 -0.02 12.03 -17.43 -0.21 -0.23 16 5 C -0.19 -1.39 10.50 -38.98 -0.41 -1.80 16 6 C -0.04 -0.37 6.96 -82.06 -0.57 -0.94 16 7 C 0.59 6.11 7.80 -12.64 -0.10 6.01 16 8 O -0.54 -7.06 14.79 5.26 0.08 -6.98 16 9 N -0.71 -5.89 5.54 -62.65 -0.35 -6.24 16 10 C 0.16 1.53 5.73 -5.20 -0.03 1.50 16 11 C -0.17 -1.61 4.60 -100.93 -0.46 -2.07 16 12 C -0.14 -1.54 8.96 -35.97 -0.32 -1.86 16 13 C 0.07 0.97 5.57 -5.28 -0.03 0.94 16 14 N -0.50 -7.28 4.77 -237.56 -1.13 -8.41 16 15 C 0.04 0.60 4.55 -4.98 -0.02 0.57 16 16 C 0.45 9.90 7.38 -10.99 -0.08 9.82 16 17 O -0.56 -14.37 13.99 5.54 0.08 -14.29 16 18 N -0.59 -13.76 5.09 -10.97 -0.06 -13.82 16 19 C -0.30 -8.46 10.16 -14.93 -0.15 -8.61 16 20 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.53 13.96 55.50 0.77 -24.75 16 23 Si 0.88 19.21 27.74 -169.99 -4.71 14.50 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.37 6.52 56.52 0.37 -5.01 16 27 C 0.05 0.53 6.03 -3.59 -0.02 0.51 16 28 C -0.12 -1.06 5.26 -28.02 -0.15 -1.20 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.11 0.85 6.54 -51.93 -0.34 0.51 16 32 H 0.19 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.16 0.71 7.58 -52.49 -0.40 0.31 16 34 H 0.41 2.52 7.49 -40.82 -0.31 2.22 16 35 H 0.08 0.76 8.13 -51.93 -0.42 0.34 16 36 H 0.07 0.78 7.85 -51.93 -0.41 0.37 16 37 H 0.11 1.18 7.81 -52.48 -0.41 0.77 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.12 2.04 5.76 -51.93 -0.30 1.74 16 40 H 0.05 0.79 5.99 -51.93 -0.31 0.48 16 41 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 42 H 0.37 7.61 5.76 -40.82 -0.24 7.38 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.72 7.13 -51.93 -0.37 0.35 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -34.93 384.66 -7.84 -42.78 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -6.43 Total: 11.65 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -2.01 Total: 4.90 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.64 Total: -58.36 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: 0.16 Total: -21.27 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.93 -7.84 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279511057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.497 kcal (2) G-P(sol) polarization free energy of solvation -34.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds