Wall clock time and date at job start Wed Apr 1 2020 05:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28442 * 125.18950 * 2 1 4 4 C 1.30869 * 110.92401 * 180.02562 * 3 2 1 5 5 C 1.39671 * 107.86513 * 359.77314 * 4 3 2 6 6 C 1.36598 * 125.18893 * 180.02562 * 2 1 3 7 7 C 1.47164 * 126.88411 * 359.94122 * 6 2 1 8 8 O 1.21623 * 119.99802 * 2.96752 * 7 6 2 9 9 N 1.34781 * 119.99776 * 182.96646 * 7 6 2 10 10 C 1.46499 * 119.99793 * 174.89287 * 9 7 6 11 11 C 1.50694 * 109.47433 * 179.97438 * 10 9 7 12 12 C 1.29824 * 118.55662 * 94.99507 * 11 10 9 13 13 C 1.50139 * 123.28747 * 180.11446 * 12 11 10 14 14 N 1.46845 * 110.27672 * 343.21667 * 13 12 11 15 15 C 1.46902 * 110.99462 * 287.53321 * 14 13 12 16 16 C 1.50693 * 109.47502 * 293.95206 * 15 14 13 17 17 O 1.21297 * 120.00064 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00114 * 180.02562 * 16 15 14 19 19 C 1.37093 * 119.99858 * 180.02562 * 18 16 15 20 20 H 1.07994 * 120.00394 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99830 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99972 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00008 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.46951 * 90.00181 * 23 21 19 25 25 H 1.48501 * 109.46868 * 210.00346 * 23 21 19 26 26 H 1.48502 * 109.47296 * 330.00090 * 23 21 19 27 27 C 1.47234 * 110.20774 * 50.92181 * 14 13 12 28 28 C 1.50307 * 118.55249 * 275.23781 * 11 10 9 29 29 H 1.09000 * 109.47240 * 265.10895 * 1 2 3 30 30 H 1.09004 * 109.46759 * 25.10812 * 1 2 3 31 31 H 1.08996 * 109.47196 * 145.10713 * 1 2 3 32 32 H 1.08006 * 126.06748 * 180.02562 * 4 3 2 33 33 H 1.07996 * 127.32268 * 180.22592 * 5 4 3 34 34 H 0.96995 * 120.00397 * 354.89162 * 9 7 6 35 35 H 1.09001 * 109.47344 * 59.99723 * 10 9 7 36 36 H 1.08998 * 109.47428 * 300.00216 * 10 9 7 37 37 H 1.08003 * 118.35422 * 0.40507 * 12 11 10 38 38 H 1.09002 * 109.33821 * 103.46020 * 13 12 11 39 39 H 1.09005 * 109.33826 * 223.12987 * 13 12 11 40 40 H 1.09003 * 109.46975 * 53.95777 * 15 14 13 41 41 H 1.09000 * 109.46634 * 173.94973 * 15 14 13 42 42 H 0.97001 * 119.99860 * 0.02562 * 18 16 15 43 43 H 0.97005 * 119.99813 * 180.02562 * 22 21 19 44 44 H 1.09001 * 109.63395 * 50.89048 * 27 14 13 45 45 H 1.08994 * 109.64127 * 171.29379 * 27 14 13 46 46 H 1.09000 * 109.55880 * 43.50920 * 28 11 10 47 47 H 1.08995 * 109.24833 * 283.69245 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7272 -0.0005 5 6 3.5612 -0.6667 0.0043 6 6 2.2521 -1.1164 -0.0005 7 6 1.7992 -2.5165 0.0001 8 8 0.6111 -2.7713 -0.0534 9 7 2.7009 -3.5165 0.0599 10 6 2.2482 -4.9052 0.1734 11 6 3.4440 -5.8210 0.2209 12 6 3.8967 -6.1909 1.3801 13 6 5.0812 -7.0975 1.5510 14 7 5.3745 -7.7945 0.2922 15 6 4.3656 -8.8253 0.0139 16 6 4.4566 -9.9113 1.0547 17 8 5.2807 -9.8341 1.9414 18 7 3.6225 -10.9686 1.0002 19 6 3.7050 -11.9563 1.9473 20 1 4.4386 -11.8875 2.7368 21 6 2.8454 -13.0466 1.8908 22 7 2.9241 -13.9931 2.7990 23 14 1.5768 -13.1660 0.5248 24 1 2.1641 -13.8844 -0.6345 25 1 0.3882 -13.9080 1.0167 26 1 1.1698 -11.8005 0.1065 27 6 5.4615 -6.8286 -0.8156 28 6 4.0634 -6.2617 -1.0758 29 1 -0.3634 -0.0876 1.0239 30 1 -0.3633 0.9306 -0.4361 31 1 -0.3633 -0.8429 -0.5878 32 1 4.3049 1.4166 -0.0003 33 1 4.4594 -1.2663 0.0087 34 1 3.6495 -3.3167 0.0277 35 1 1.6315 -5.1579 -0.6891 36 1 1.6632 -5.0233 1.0854 37 1 3.3933 -5.8321 2.2657 38 1 5.9482 -6.5068 1.8469 39 1 4.8641 -7.8328 2.3259 40 1 3.3719 -8.3780 0.0415 41 1 4.5447 -9.2518 -0.9730 42 1 2.9638 -11.0306 0.2908 43 1 2.3242 -14.7544 2.7593 44 1 6.1399 -6.0198 -0.5439 45 1 5.8293 -7.3299 -1.7107 46 1 4.1374 -5.4106 -1.7527 47 1 3.4387 -7.0313 -1.5291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279511057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:00 Heat of formation + Delta-G solvation = 17.294054 kcal Electronic energy + Delta-G solvation = -29778.164134 eV Core-core repulsion = 25576.526937 eV Total energy + Delta-G solvation = -4201.637197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -43.53266 -41.27789 -40.47821 -39.43445 -36.60405 -35.91406 -34.40783 -33.78169 -33.65124 -31.92996 -31.78044 -29.86115 -28.11212 -27.48735 -26.15820 -24.65802 -23.99800 -22.95955 -22.35485 -21.34263 -21.16128 -20.35177 -19.35983 -18.25428 -17.88938 -17.38502 -17.35040 -16.93207 -16.76787 -16.54258 -16.15071 -16.02746 -15.58648 -15.48109 -15.21285 -14.95696 -14.76799 -14.72334 -14.47617 -14.42375 -14.06208 -13.92410 -13.76567 -13.63272 -13.30640 -13.10811 -13.00248 -12.94361 -12.52885 -12.39778 -12.12129 -11.96803 -11.87963 -11.62327 -11.45954 -11.36768 -10.47493 -10.35146 -10.22145 -10.12101 -10.02331 -9.90412 -9.13721 -8.39726 -5.99782 0.16459 0.87225 1.30395 1.35759 1.44248 1.46286 1.61654 1.99105 2.09369 2.23620 2.28977 2.70697 3.16248 3.27033 3.51667 3.60630 3.66342 3.76341 4.08241 4.12093 4.21783 4.25373 4.28165 4.34926 4.39766 4.46409 4.48200 4.56807 4.58348 4.64908 4.69395 4.77173 4.80347 4.83093 4.99918 5.06937 5.12821 5.20848 5.47479 5.52014 5.55133 5.68685 5.82191 5.94352 6.10704 6.24014 6.32581 6.62025 6.91067 6.94343 7.04849 7.42770 8.00158 8.77846 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018384 B = 0.002020 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.719811 B =13856.956205 C =14715.403779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.271 5.271 3 N -0.303 5.303 4 C -0.007 4.007 5 C -0.175 4.175 6 C -0.062 4.062 7 C 0.590 3.410 8 O -0.574 6.574 9 N -0.692 5.692 10 C 0.166 3.834 11 C -0.139 4.139 12 C -0.153 4.153 13 C 0.076 3.924 14 N -0.527 5.527 15 C 0.053 3.947 16 C 0.452 3.548 17 O -0.605 6.605 18 N -0.594 5.594 19 C -0.324 4.324 20 H 0.056 0.944 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.962 3.038 24 H -0.256 1.256 25 H -0.277 1.277 26 H -0.233 1.233 27 C 0.054 3.946 28 C -0.116 4.116 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.217 0.783 33 H 0.193 0.807 34 H 0.418 0.582 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.119 0.881 42 H 0.388 0.612 43 H 0.278 0.722 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.102 0.898 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 29.153 -13.713 32.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.059 5.059 3 N -0.137 5.137 4 C -0.182 4.182 5 C -0.204 4.204 6 C -0.191 4.191 7 C 0.376 3.624 8 O -0.455 6.455 9 N -0.344 5.344 10 C 0.043 3.957 11 C -0.140 4.140 12 C -0.173 4.173 13 C -0.051 4.051 14 N -0.249 5.249 15 C -0.078 4.078 16 C 0.240 3.760 17 O -0.489 6.489 18 N -0.236 5.236 19 C -0.453 4.453 20 H 0.074 0.926 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.783 3.217 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.156 1.156 27 C -0.073 4.073 28 C -0.154 4.154 29 H 0.107 0.893 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.234 0.766 33 H 0.210 0.790 34 H 0.255 0.745 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.137 0.863 42 H 0.223 0.777 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.120 0.880 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.599 29.478 -13.008 32.325 hybrid contribution -0.711 -0.985 0.116 1.220 sum -3.310 28.493 -12.892 31.449 Atomic orbital electron populations 1.22421 0.71828 1.06211 1.05224 1.45862 1.08617 1.01749 1.49642 1.73232 1.05594 1.14143 1.20685 1.24220 0.93530 0.95889 1.04559 1.22711 0.95671 0.95865 1.06126 1.21517 0.92606 0.89254 1.15691 1.17076 0.85426 0.83718 0.76145 1.90789 1.17515 1.85056 1.52100 1.45573 1.10345 1.05193 1.73278 1.20267 0.94437 0.78560 1.02410 1.20866 0.97651 0.99992 0.95492 1.22989 0.98148 0.98023 0.98184 1.21135 0.95787 0.95234 0.92987 1.62254 1.46157 1.12907 1.03628 1.21834 0.96179 0.91820 0.98008 1.20955 0.82474 0.84244 0.88375 1.90518 1.39461 1.79199 1.39715 1.42061 1.33907 1.20400 1.27223 1.18983 1.18878 1.00080 1.07363 0.92569 1.26094 1.00315 0.94429 1.00672 1.69807 1.40020 1.11158 1.36627 0.85396 0.77720 0.80486 0.78130 1.18061 1.20228 1.15599 1.22456 0.96159 0.94810 0.93903 1.21092 0.97325 1.02443 0.94533 0.89335 0.87066 0.88201 0.76610 0.79013 0.74461 0.90451 0.91922 0.87254 0.88530 0.91553 0.90790 0.86347 0.77676 0.91255 0.88936 0.88700 0.87986 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 10.71 127.77 1.37 2.54 16 2 N -0.27 -5.00 3.75 -356.02 -1.33 -6.33 16 3 N -0.30 -5.57 11.90 -57.13 -0.68 -6.25 16 4 C -0.01 -0.09 12.03 85.18 1.02 0.93 16 5 C -0.17 -2.07 10.50 22.66 0.24 -1.83 16 6 C -0.06 -1.08 6.96 40.79 0.28 -0.80 16 7 C 0.59 11.28 7.80 86.59 0.68 11.95 16 8 O -0.57 -14.60 14.79 -4.11 -0.06 -14.66 16 9 N -0.69 -9.68 5.54 -470.38 -2.60 -12.29 16 10 C 0.17 2.72 5.73 85.63 0.49 3.21 16 11 C -0.14 -2.27 4.60 -15.40 -0.07 -2.34 16 12 C -0.15 -3.20 8.96 26.68 0.24 -2.96 16 13 C 0.08 2.10 5.57 85.39 0.48 2.57 16 14 N -0.53 -14.18 4.77 -905.50 -4.32 -18.50 16 15 C 0.05 1.55 4.55 85.55 0.39 1.94 16 16 C 0.45 19.92 7.38 87.65 0.65 20.56 16 17 O -0.60 -32.53 13.99 -3.08 -0.04 -32.58 16 18 N -0.59 -27.71 5.09 -306.99 -1.56 -29.27 16 19 C -0.32 -18.84 10.16 84.04 0.85 -17.99 16 20 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 21 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 22 N -0.94 -56.42 13.96 21.66 0.30 -56.12 16 23 Si 0.96 38.79 27.74 68.60 1.90 40.70 16 24 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 25 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 26 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 27 C 0.05 0.88 6.03 86.27 0.52 1.40 16 28 C -0.12 -1.53 5.26 29.76 0.16 -1.37 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 1.58 6.54 -2.39 -0.02 1.56 16 32 H 0.22 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.19 0.86 7.58 -2.91 -0.02 0.84 16 34 H 0.42 3.67 7.49 -92.71 -0.69 2.98 16 35 H 0.08 1.32 8.13 -2.39 -0.02 1.30 16 36 H 0.06 1.22 7.85 -2.39 -0.02 1.20 16 37 H 0.11 2.28 7.81 -2.91 -0.02 2.26 16 38 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.07 2.48 5.76 -2.38 -0.01 2.47 16 40 H 0.07 1.91 5.99 -2.39 -0.01 1.90 16 41 H 0.12 2.82 8.09 -2.39 -0.02 2.80 16 42 H 0.39 15.05 5.76 -92.71 -0.53 14.51 16 43 H 0.28 15.36 8.31 -92.70 -0.77 14.59 16 44 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 45 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.08 1.10 7.13 -2.39 -0.02 1.08 16 Total: -1.00 -83.20 384.66 -0.90 -84.11 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: -0.26 Total: 33.83 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 7.76 Total: 17.37 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -10.20 Total: -128.77 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -0.10 Total: -47.23 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.90 Total: 40.70 kcal Total: -83.20 -0.90 -84.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279511057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.400 kcal (2) G-P(sol) polarization free energy of solvation -83.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds