Wall clock time and date at job start Wed Apr 1 2020 05:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35850 * 126.13540 * 2 1 4 4 N 1.30173 * 108.99961 * 179.73679 * 3 2 1 5 5 C 1.35752 * 108.87007 * 0.38558 * 4 3 2 6 6 C 1.47330 * 126.23664 * 179.87730 * 5 4 3 7 7 O 1.21619 * 119.99902 * 179.69085 * 6 5 4 8 8 N 1.34777 * 119.99434 * 359.69185 * 6 5 4 9 9 C 1.46505 * 119.99305 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46784 * 180.02562 * 9 8 6 11 11 C 1.29823 * 118.55903 * 94.99514 * 10 9 8 12 12 C 1.50140 * 123.28749 * 180.39016 * 11 10 9 13 13 N 1.46846 * 110.27590 * 342.93553 * 12 11 10 14 14 C 1.46899 * 111.00302 * 174.31282 * 13 12 11 15 15 C 1.50698 * 109.46987 * 66.03980 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47459 * 59.99812 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47211 * 300.00250 * 22 20 18 26 26 C 1.47239 * 110.20601 * 50.91850 * 13 12 11 27 27 C 1.50311 * 118.54939 * 275.02136 * 10 9 8 28 28 C 1.35382 * 126.13333 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47418 * 270.02094 * 1 2 3 30 30 H 1.08995 * 109.47406 * 30.02525 * 1 2 3 31 31 H 1.09002 * 109.46861 * 150.02168 * 1 2 3 32 32 H 1.07994 * 125.49325 * 359.97438 * 3 2 1 33 33 H 0.96995 * 120.00499 * 0.02562 * 8 6 5 34 34 H 1.08995 * 109.47150 * 60.00098 * 9 8 6 35 35 H 1.09003 * 109.47146 * 299.99438 * 9 8 6 36 36 H 1.08001 * 118.35167 * 0.37934 * 11 10 9 37 37 H 1.08998 * 109.34082 * 222.68723 * 12 11 10 38 38 H 1.09003 * 109.33334 * 103.17518 * 12 11 10 39 39 H 1.09003 * 109.46477 * 306.04469 * 14 13 12 40 40 H 1.08993 * 109.47002 * 186.04796 * 14 13 12 41 41 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 42 42 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.63934 * 50.89479 * 26 13 12 44 44 H 1.08999 * 109.63492 * 171.50188 * 26 13 12 45 45 H 1.09006 * 109.42858 * 283.57665 * 27 10 9 46 46 H 1.08998 * 109.43146 * 43.42197 * 27 10 9 47 47 H 1.08000 * 126.56418 * 0.03579 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0972 0.0000 4 7 3.5100 0.7136 0.0057 5 6 3.5511 -0.6433 0.0008 6 6 4.7653 -1.4778 0.0021 7 8 4.6698 -2.6902 0.0030 8 7 5.9817 -0.8974 0.0023 9 6 7.1891 -1.7273 0.0041 10 6 8.4078 -0.8409 0.0045 11 6 8.9671 -0.5552 1.1408 12 6 10.1783 0.3232 1.2653 13 7 10.8466 0.4559 -0.0356 14 6 11.9543 1.4180 0.0372 15 6 13.0320 0.8759 0.9404 16 8 12.8913 -0.2058 1.4708 17 7 14.1525 1.5926 1.1578 18 6 15.1305 1.1019 1.9839 19 1 15.0049 0.1391 2.4568 20 6 16.2832 1.8433 2.2127 21 7 16.4357 3.0151 1.6376 22 14 17.6160 1.1745 3.3376 23 1 18.1195 -0.1138 2.7972 24 1 18.7333 2.1496 3.4156 25 1 17.0545 0.9561 4.6950 26 6 9.8741 0.8480 -1.0692 27 6 8.9221 -0.3259 -1.3107 28 6 2.2633 -1.0934 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.9257 2.1221 -0.0004 33 1 6.0579 0.0695 0.0019 34 1 7.1981 -2.3576 -0.8851 35 1 7.1969 -2.3555 0.8949 36 1 8.5394 -0.9701 2.0416 37 1 10.8706 -0.1162 1.9834 38 1 9.8745 1.3091 1.6171 39 1 11.5880 2.3641 0.4359 40 1 12.3627 1.5780 -0.9606 41 1 14.2651 2.4575 0.7333 42 1 17.2405 3.5325 1.7970 43 1 9.3071 1.7145 -0.7290 44 1 10.3992 1.0900 -1.9932 45 1 9.4545 -1.1234 -1.8291 46 1 8.0837 0.0068 -1.9226 47 1 1.9421 -2.1245 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279527155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:41 Heat of formation + Delta-G solvation = 17.730476 kcal Electronic energy + Delta-G solvation = -28908.609680 eV Core-core repulsion = 24706.991408 eV Total energy + Delta-G solvation = -4201.618272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.57372 -39.67005 -39.00199 -37.66348 -35.36581 -34.62968 -33.87314 -32.81614 -31.19311 -30.66865 -30.27020 -28.66039 -27.61360 -25.91906 -24.30233 -23.54708 -23.05524 -21.80845 -21.52012 -20.33560 -19.18154 -18.50308 -17.84571 -17.38572 -16.50582 -16.37680 -16.17441 -16.04289 -15.40508 -15.20937 -14.80004 -14.67474 -14.52852 -14.22851 -14.11560 -13.80356 -13.78885 -13.59611 -13.56906 -13.37241 -13.21360 -12.78525 -12.55491 -12.19102 -12.08753 -11.79257 -11.46114 -11.28193 -11.02908 -10.79731 -10.73302 -10.42812 -10.39000 -10.24910 -10.22919 -10.17357 -9.44709 -9.23137 -8.93530 -8.79293 -8.41811 -7.94181 -7.78042 -6.38316 -3.78966 1.23987 2.04452 2.04932 2.21789 3.22846 3.28274 3.32863 3.35694 3.36861 3.94040 4.03856 4.04517 4.09762 4.28683 4.32098 4.44985 4.65467 4.72610 4.80570 4.82641 5.06812 5.08930 5.27291 5.33723 5.41089 5.50387 5.55388 5.62763 5.63847 5.73615 5.77158 5.86489 6.00050 6.00964 6.01898 6.19775 6.29563 6.34442 6.41937 6.51976 6.54686 7.01455 7.26089 7.38770 7.41621 7.57487 7.58420 8.10009 8.14386 8.65758 9.21718 9.58279 10.10424 10.79390 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027616 B = 0.001568 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.649466 B =17850.027432 C =18064.420415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.462 5.462 3 C 0.185 3.815 4 N -0.463 5.463 5 C -0.062 4.062 6 C 0.601 3.399 7 O -0.549 6.549 8 N -0.709 5.709 9 C 0.159 3.841 10 C -0.154 4.154 11 C -0.107 4.107 12 C 0.073 3.927 13 N -0.509 5.509 14 C 0.045 3.955 15 C 0.444 3.556 16 O -0.577 6.577 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.050 3.950 27 C -0.070 4.070 28 C 0.032 3.968 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.212 0.788 33 H 0.409 0.591 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.034 0.966 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.387 -0.405 -6.319 33.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.144 5.144 3 C -0.099 4.099 4 N -0.181 5.181 5 C -0.191 4.191 6 C 0.387 3.613 7 O -0.427 6.427 8 N -0.360 5.360 9 C 0.036 3.964 10 C -0.155 4.155 11 C -0.127 4.127 12 C -0.054 4.054 13 N -0.233 5.233 14 C -0.087 4.087 15 C 0.229 3.771 16 O -0.461 6.461 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.078 4.078 27 C -0.108 4.108 28 C -0.107 4.107 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.229 0.771 33 H 0.245 0.755 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.052 0.948 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -31.590 -1.821 -6.073 32.220 hybrid contribution -0.304 1.147 0.520 1.296 sum -31.894 -0.674 -5.554 32.381 Atomic orbital electron populations 1.22163 0.75712 1.05231 1.04160 1.45370 1.08314 1.06934 1.53768 1.25224 0.85143 0.93633 1.05865 1.70616 1.19576 1.10380 1.17571 1.20604 0.93220 0.90542 1.14736 1.16906 0.82001 0.86317 0.76030 1.90799 1.86919 1.13422 1.51537 1.45901 1.04763 1.11184 1.74126 1.20352 0.81165 0.92145 1.02713 1.20827 0.97184 1.01711 0.95792 1.22329 0.95574 0.97415 0.97332 1.21247 0.94126 0.97287 0.92722 1.62039 1.08606 1.47072 1.05586 1.21906 0.92517 0.93321 1.00932 1.19751 0.84111 0.86996 0.86218 1.90481 1.79661 1.22217 1.53768 1.41859 1.15772 1.19659 1.42830 1.19656 0.95983 1.04586 1.22616 0.87965 1.25246 0.98696 0.95592 0.98369 1.69606 1.28887 1.11952 1.43955 0.85925 0.79698 0.78397 0.80230 1.19900 1.21022 1.19959 1.22217 0.93691 0.95890 0.96029 1.20391 0.97748 0.98112 0.94535 1.22622 0.90224 0.93246 1.04594 0.89994 0.88925 0.89204 0.77133 0.75546 0.90859 0.90984 0.87177 0.86521 0.94198 0.93449 0.89210 0.77502 0.91874 0.94809 0.90470 0.90106 0.91146 0.79464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.05 11.15 59.85 0.67 0.72 16 2 N -0.46 -2.49 3.13 -125.78 -0.39 -2.89 16 3 C 0.19 1.20 12.55 -89.90 -1.13 0.08 16 4 N -0.46 -4.72 11.01 -11.03 -0.12 -4.84 16 5 C -0.06 -0.68 6.98 -83.09 -0.58 -1.26 16 6 C 0.60 7.84 7.81 -12.56 -0.10 7.74 16 7 O -0.55 -8.56 16.88 5.26 0.09 -8.48 16 8 N -0.71 -8.38 5.55 -62.59 -0.35 -8.73 16 9 C 0.16 1.93 5.72 -5.19 -0.03 1.90 16 10 C -0.15 -1.97 5.26 -100.92 -0.53 -2.50 16 11 C -0.11 -1.51 9.50 -35.97 -0.34 -1.85 16 12 C 0.07 1.22 5.22 -5.28 -0.03 1.19 16 13 N -0.51 -8.68 4.46 -237.58 -1.06 -9.74 16 14 C 0.04 0.81 5.44 -4.98 -0.03 0.78 16 15 C 0.44 10.52 7.54 -10.99 -0.08 10.44 16 16 O -0.58 -15.58 13.88 5.55 0.08 -15.50 16 17 N -0.56 -14.36 5.29 -10.96 -0.06 -14.41 16 18 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 22 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.05 0.66 5.59 -3.61 -0.02 0.64 16 27 C -0.07 -0.85 6.04 -28.04 -0.17 -1.02 16 28 C 0.03 0.26 11.26 -16.64 -0.19 0.07 16 29 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 30 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 31 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.21 0.52 8.06 -52.49 -0.42 0.10 16 33 H 0.41 4.56 8.18 -40.82 -0.33 4.22 16 34 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 35 H 0.07 0.91 7.85 -51.93 -0.41 0.51 16 36 H 0.11 1.43 7.81 -52.49 -0.41 1.02 16 37 H 0.12 2.35 5.98 -51.93 -0.31 2.04 16 38 H 0.04 0.63 8.06 -51.93 -0.42 0.21 16 39 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16 40 H 0.09 1.46 7.94 -51.93 -0.41 1.05 16 41 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 44 H 0.08 0.93 7.92 -51.93 -0.41 0.52 16 45 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.19 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -35.97 397.52 -9.67 -45.65 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -6.76 Total: 11.77 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -2.80 Total: 8.92 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -1.25 Total: -64.53 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.17 Total: -23.98 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.97 -9.67 -45.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279527155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.378 kcal (2) G-P(sol) polarization free energy of solvation -35.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds