Wall clock time and date at job start Wed Apr 1 2020 05:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35850 * 126.13540 * 2 1 4 4 N 1.30173 * 108.99961 * 179.73679 * 3 2 1 5 5 C 1.35752 * 108.87007 * 0.38558 * 4 3 2 6 6 C 1.47330 * 126.23664 * 179.87730 * 5 4 3 7 7 O 1.21619 * 119.99902 * 179.69085 * 6 5 4 8 8 N 1.34777 * 119.99434 * 359.69185 * 6 5 4 9 9 C 1.46505 * 119.99305 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46784 * 180.02562 * 9 8 6 11 11 C 1.29823 * 118.55903 * 94.99514 * 10 9 8 12 12 C 1.50140 * 123.28749 * 180.39016 * 11 10 9 13 13 N 1.46846 * 110.27590 * 342.93553 * 12 11 10 14 14 C 1.46899 * 111.00302 * 174.31282 * 13 12 11 15 15 C 1.50698 * 109.46987 * 66.03980 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47459 * 59.99812 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47211 * 300.00250 * 22 20 18 26 26 C 1.47239 * 110.20601 * 50.91850 * 13 12 11 27 27 C 1.50311 * 118.54939 * 275.02136 * 10 9 8 28 28 C 1.35382 * 126.13333 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47418 * 270.02094 * 1 2 3 30 30 H 1.08995 * 109.47406 * 30.02525 * 1 2 3 31 31 H 1.09002 * 109.46861 * 150.02168 * 1 2 3 32 32 H 1.07994 * 125.49325 * 359.97438 * 3 2 1 33 33 H 0.96995 * 120.00499 * 0.02562 * 8 6 5 34 34 H 1.08995 * 109.47150 * 60.00098 * 9 8 6 35 35 H 1.09003 * 109.47146 * 299.99438 * 9 8 6 36 36 H 1.08001 * 118.35167 * 0.37934 * 11 10 9 37 37 H 1.08998 * 109.34082 * 222.68723 * 12 11 10 38 38 H 1.09003 * 109.33334 * 103.17518 * 12 11 10 39 39 H 1.09003 * 109.46477 * 306.04469 * 14 13 12 40 40 H 1.08993 * 109.47002 * 186.04796 * 14 13 12 41 41 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 42 42 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.63934 * 50.89479 * 26 13 12 44 44 H 1.08999 * 109.63492 * 171.50188 * 26 13 12 45 45 H 1.09006 * 109.42858 * 283.57665 * 27 10 9 46 46 H 1.08998 * 109.43146 * 43.42197 * 27 10 9 47 47 H 1.08000 * 126.56418 * 0.03579 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0972 0.0000 4 7 3.5100 0.7136 0.0057 5 6 3.5511 -0.6433 0.0008 6 6 4.7653 -1.4778 0.0021 7 8 4.6698 -2.6902 0.0030 8 7 5.9817 -0.8974 0.0023 9 6 7.1891 -1.7273 0.0041 10 6 8.4078 -0.8409 0.0045 11 6 8.9671 -0.5552 1.1408 12 6 10.1783 0.3232 1.2653 13 7 10.8466 0.4559 -0.0356 14 6 11.9543 1.4180 0.0372 15 6 13.0320 0.8759 0.9404 16 8 12.8913 -0.2058 1.4708 17 7 14.1525 1.5926 1.1578 18 6 15.1305 1.1019 1.9839 19 1 15.0049 0.1391 2.4568 20 6 16.2832 1.8433 2.2127 21 7 16.4357 3.0151 1.6376 22 14 17.6160 1.1745 3.3376 23 1 18.1195 -0.1138 2.7972 24 1 18.7333 2.1496 3.4156 25 1 17.0545 0.9561 4.6950 26 6 9.8741 0.8480 -1.0692 27 6 8.9221 -0.3259 -1.3107 28 6 2.2633 -1.0934 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.9257 2.1221 -0.0004 33 1 6.0579 0.0695 0.0019 34 1 7.1981 -2.3576 -0.8851 35 1 7.1969 -2.3555 0.8949 36 1 8.5394 -0.9701 2.0416 37 1 10.8706 -0.1162 1.9834 38 1 9.8745 1.3091 1.6171 39 1 11.5880 2.3641 0.4359 40 1 12.3627 1.5780 -0.9606 41 1 14.2651 2.4575 0.7333 42 1 17.2405 3.5325 1.7970 43 1 9.3071 1.7145 -0.7290 44 1 10.3992 1.0900 -1.9932 45 1 9.4545 -1.1234 -1.8291 46 1 8.0837 0.0068 -1.9226 47 1 1.9421 -2.1245 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279527155.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:40 Heat of formation + Delta-G solvation = -8.815567 kcal Electronic energy + Delta-G solvation = -28909.760803 eV Core-core repulsion = 24706.991408 eV Total energy + Delta-G solvation = -4202.769395 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.11251 -40.84377 -40.29754 -39.24378 -36.57644 -35.83948 -35.08929 -33.96961 -33.21951 -31.78526 -30.92294 -29.80054 -28.22725 -27.25518 -25.86310 -24.72732 -23.94633 -22.87716 -22.06501 -21.18274 -21.03496 -19.86649 -19.20709 -18.41845 -17.76692 -17.23841 -17.14960 -16.90335 -16.63203 -16.58059 -16.17353 -15.84183 -15.64466 -15.44854 -15.29202 -15.11029 -14.82660 -14.66241 -14.53527 -14.11596 -13.87142 -13.74956 -13.55576 -13.49098 -13.43100 -13.24527 -12.97046 -12.89577 -12.48782 -12.41732 -12.11557 -12.08003 -11.50239 -11.44256 -11.43362 -11.13210 -10.71904 -10.26204 -10.17870 -9.99155 -9.88571 -9.60321 -9.17521 -8.44383 -5.92793 0.56049 1.02256 1.40734 1.42372 1.44883 1.53182 1.78704 2.08160 2.29964 2.48644 2.52726 2.78887 3.22372 3.40687 3.44732 3.58135 3.81734 3.89497 4.01106 4.18592 4.21313 4.29551 4.37302 4.41476 4.43971 4.47244 4.50724 4.54701 4.59816 4.64438 4.69596 4.77955 4.79406 4.95859 5.06602 5.08285 5.19065 5.36434 5.40535 5.42424 5.43642 5.86969 5.97402 6.11057 6.14192 6.21781 6.48319 6.63679 6.86250 7.15548 7.21236 7.59318 8.15727 8.72768 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027616 B = 0.001568 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.649466 B =17850.027432 C =18064.420415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.454 5.454 3 C 0.194 3.806 4 N -0.499 5.499 5 C -0.101 4.101 6 C 0.597 3.403 7 O -0.585 6.585 8 N -0.703 5.703 9 C 0.165 3.835 10 C -0.135 4.135 11 C -0.125 4.125 12 C 0.079 3.921 13 N -0.529 5.529 14 C 0.057 3.943 15 C 0.441 3.559 16 O -0.615 6.615 17 N -0.574 5.574 18 C -0.333 4.333 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.273 1.273 26 C 0.051 3.949 27 C -0.070 4.070 28 C 0.039 3.961 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.251 0.749 33 H 0.413 0.587 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.115 0.885 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.114 0.886 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.047 0.953 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.626 0.979 -7.398 35.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.134 5.134 3 C -0.091 4.091 4 N -0.218 5.218 5 C -0.229 4.229 6 C 0.385 3.615 7 O -0.466 6.466 8 N -0.353 5.353 9 C 0.042 3.958 10 C -0.136 4.136 11 C -0.145 4.145 12 C -0.048 4.048 13 N -0.255 5.255 14 C -0.074 4.074 15 C 0.228 3.772 16 O -0.501 6.501 17 N -0.212 5.212 18 C -0.463 4.463 19 H 0.096 0.904 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.076 4.076 27 C -0.107 4.107 28 C -0.103 4.103 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.119 0.881 32 H 0.267 0.733 33 H 0.250 0.750 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.133 0.867 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.132 0.868 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.113 0.887 45 H 0.097 0.903 46 H 0.114 0.886 47 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -33.863 -0.393 -7.172 34.616 hybrid contribution 0.226 0.730 0.821 1.122 sum -33.637 0.337 -6.351 34.233 Atomic orbital electron populations 1.22541 0.72695 1.07077 1.05524 1.45640 1.09970 1.05745 1.52054 1.25990 0.84352 0.95235 1.03481 1.70535 1.21927 1.09967 1.19402 1.20460 0.93267 0.91191 1.18021 1.17279 0.82821 0.86182 0.75174 1.90761 1.87481 1.14896 1.53437 1.45807 1.04423 1.11252 1.73791 1.20237 0.81193 0.92006 1.02387 1.20928 0.96571 1.00278 0.95784 1.22217 0.95440 0.98520 0.98306 1.21019 0.93956 0.97790 0.92032 1.61986 1.09543 1.47465 1.06459 1.21786 0.91226 0.93848 1.00569 1.20802 0.84443 0.86213 0.85733 1.90465 1.80463 1.24003 1.55162 1.41920 1.16143 1.20047 1.43055 1.19621 0.97792 1.04465 1.24412 0.90407 1.26000 1.00102 0.95718 0.99328 1.69666 1.29573 1.12471 1.44405 0.85011 0.77244 0.77989 0.78216 1.19829 1.19442 1.19808 1.22338 0.93224 0.96686 0.95394 1.20456 0.98325 0.97764 0.94153 1.22828 0.89838 0.94497 1.03145 0.88808 0.86462 0.88119 0.73348 0.75028 0.90721 0.91859 0.86710 0.90761 0.93592 0.91373 0.86842 0.77012 0.91347 0.93486 0.88711 0.90307 0.88640 0.78354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.12 11.15 127.77 1.42 1.31 16 2 N -0.45 -3.77 3.13 -551.85 -1.73 -5.49 16 3 C 0.19 2.04 12.55 180.10 2.26 4.30 16 4 N -0.50 -9.63 11.01 -188.81 -2.08 -11.71 16 5 C -0.10 -2.20 6.98 40.51 0.28 -1.92 16 6 C 0.60 15.81 7.81 86.64 0.68 16.49 16 7 O -0.58 -18.75 16.88 -4.09 -0.07 -18.82 16 8 N -0.70 -16.55 5.55 -470.18 -2.61 -19.16 16 9 C 0.16 3.99 5.72 85.63 0.49 4.48 16 10 C -0.13 -3.36 5.26 -15.40 -0.08 -3.44 16 11 C -0.13 -3.58 9.50 26.68 0.25 -3.33 16 12 C 0.08 2.70 5.22 85.39 0.45 3.15 16 13 N -0.53 -17.69 4.46 -905.56 -4.04 -21.73 16 14 C 0.06 2.00 5.44 85.56 0.47 2.47 16 15 C 0.44 21.34 7.54 87.66 0.66 22.00 16 16 O -0.61 -34.57 13.88 -3.07 -0.04 -34.61 16 17 N -0.57 -29.84 5.29 -306.98 -1.62 -31.47 16 18 C -0.33 -19.19 9.68 84.04 0.81 -18.37 16 19 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 20 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 21 N -0.92 -50.05 13.05 21.66 0.28 -49.76 16 22 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 C 0.05 1.23 5.59 86.26 0.48 1.71 16 27 C -0.07 -1.55 6.04 29.75 0.18 -1.37 16 28 C 0.04 0.58 11.26 83.72 0.94 1.53 16 29 H 0.09 -0.33 8.14 -2.39 -0.02 -0.34 16 30 H 0.12 -0.74 8.14 -2.39 -0.02 -0.76 16 31 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.25 0.28 8.06 -2.91 -0.02 0.26 16 33 H 0.41 9.01 8.18 -92.71 -0.76 8.25 16 34 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16 35 H 0.06 1.65 7.85 -2.39 -0.02 1.63 16 36 H 0.11 3.10 7.81 -2.91 -0.02 3.07 16 37 H 0.07 3.17 5.98 -2.39 -0.01 3.15 16 38 H 0.05 1.46 8.06 -2.39 -0.02 1.44 16 39 H 0.07 2.14 8.06 -2.39 -0.02 2.12 16 40 H 0.11 3.47 7.94 -2.39 -0.02 3.45 16 41 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 42 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 43 H 0.05 1.04 8.08 -2.39 -0.02 1.02 16 44 H 0.09 1.98 7.92 -2.39 -0.02 1.96 16 45 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 46 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.20 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -81.13 397.52 -0.58 -81.72 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -0.48 Total: 36.63 kcal Atomic # 6 Polarization: 19.05 SS G_CDS: 9.76 Total: 28.82 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -11.79 Total: -139.32 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -0.11 Total: -53.43 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -81.13 -0.58 -81.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279527155.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.900 kcal (2) G-P(sol) polarization free energy of solvation -81.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds