Wall clock time and date at job start Wed Apr 1 2020 05:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34489 * 126.47085 * 2 1 4 4 N 1.30859 * 109.16271 * 180.25564 * 3 2 1 5 5 C 1.33323 * 109.68244 * 359.75777 * 4 3 2 6 6 C 1.36662 * 107.78769 * 0.02562 * 5 4 3 7 7 C 1.46760 * 126.84532 * 179.97438 * 6 5 4 8 8 O 1.21684 * 119.99825 * 184.90978 * 7 6 5 9 9 N 1.34771 * 120.00260 * 4.90271 * 7 6 5 10 10 C 1.46498 * 120.00506 * 174.55191 * 9 7 6 11 11 C 1.50697 * 109.47763 * 180.02562 * 10 9 7 12 12 C 1.29823 * 118.55710 * 94.99436 * 11 10 9 13 13 C 1.50140 * 123.28636 * 180.11724 * 12 11 10 14 14 N 1.46842 * 110.27286 * 343.21162 * 13 12 11 15 15 C 1.46902 * 110.99727 * 287.53293 * 14 13 12 16 16 C 1.50697 * 109.47468 * 293.95757 * 15 14 13 17 17 O 1.21291 * 119.99913 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00041 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00294 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99563 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00139 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99564 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99989 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47324 * 89.99843 * 23 21 19 25 25 H 1.48499 * 109.46769 * 209.99445 * 23 21 19 26 26 H 1.48491 * 109.47290 * 329.99707 * 23 21 19 27 27 C 1.47238 * 110.20872 * 50.92702 * 14 13 12 28 28 C 1.50304 * 118.55102 * 275.23717 * 11 10 9 29 29 H 1.08994 * 109.47447 * 272.02124 * 1 2 3 30 30 H 1.09005 * 109.47173 * 32.02194 * 1 2 3 31 31 H 1.09005 * 109.47394 * 152.01917 * 1 2 3 32 32 H 1.08003 * 125.42055 * 0.04973 * 3 2 1 33 33 H 1.07998 * 126.10434 * 180.02562 * 5 4 3 34 34 H 0.97004 * 120.00204 * 354.54784 * 9 7 6 35 35 H 1.09000 * 109.47180 * 59.99427 * 10 9 7 36 36 H 1.09004 * 109.46778 * 300.00542 * 10 9 7 37 37 H 1.08004 * 118.35179 * 0.40085 * 12 11 10 38 38 H 1.08997 * 109.33589 * 103.45423 * 13 12 11 39 39 H 1.09003 * 109.33689 * 223.12693 * 13 12 11 40 40 H 1.08997 * 109.47073 * 53.96199 * 15 14 13 41 41 H 1.09006 * 109.46805 * 173.95258 * 15 14 13 42 42 H 0.97007 * 119.99842 * 359.97438 * 18 16 15 43 43 H 0.97008 * 119.99357 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.63789 * 50.88708 * 27 14 13 45 45 H 1.09001 * 109.63695 * 171.29354 * 27 14 13 46 46 H 1.09006 * 109.56181 * 43.50522 * 28 11 10 47 47 H 1.09008 * 109.24766 * 283.69109 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0815 0.0000 4 7 3.5138 0.6922 -0.0055 5 6 3.5690 -0.6399 -0.0039 6 6 2.2862 -1.1109 0.0023 7 6 1.8649 -2.5167 0.0056 8 8 0.6840 -2.7982 -0.0790 9 7 2.7858 -3.4960 0.1021 10 6 2.3601 -4.8924 0.2256 11 6 3.5735 -5.7813 0.3169 12 6 4.0047 -6.1241 1.4925 13 6 5.2036 -7.0022 1.7067 14 7 5.5431 -7.7112 0.4664 15 6 4.5637 -8.7677 0.1790 16 6 4.6516 -9.8359 1.2383 17 8 5.4512 -9.7276 2.1439 18 7 3.8418 -10.9117 1.1794 19 6 3.9215 -11.8833 2.1434 20 1 4.6329 -11.7864 2.9502 21 6 3.0862 -12.9921 2.0829 22 7 3.1630 -13.9236 3.0067 23 14 1.8553 -13.1592 0.6878 24 1 2.4862 -13.8829 -0.4450 25 1 0.6703 -13.9184 1.1617 26 1 1.4308 -11.8092 0.2379 27 6 5.6374 -6.7601 -0.6537 28 6 4.2345 -6.2276 -0.9571 29 1 -0.3634 0.0362 1.0270 30 1 -0.3634 0.8713 -0.5449 31 1 -0.3634 -0.9076 -0.4822 32 1 1.9288 2.1080 0.0008 33 1 4.4672 -1.2396 -0.0071 34 1 3.7305 -3.2764 0.0897 35 1 1.7700 -5.1709 -0.6475 36 1 1.7556 -5.0097 1.1251 37 1 3.4717 -5.7631 2.3596 38 1 6.0500 -6.3884 2.0148 39 1 4.9828 -7.7304 2.4871 40 1 3.5604 -8.3417 0.1750 41 1 4.7766 -9.2049 -0.7966 42 1 3.2021 -10.9981 0.4553 43 1 2.5796 -14.6975 2.9646 44 1 6.2914 -5.9330 -0.3778 45 1 6.0381 -7.2668 -1.5317 46 1 4.3074 -5.3852 -1.6450 47 1 3.6379 -7.0173 -1.4140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279591251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:26 Heat of formation + Delta-G solvation = 28.462451 kcal Electronic energy + Delta-G solvation = -29767.298592 eV Core-core repulsion = 25566.145693 eV Total energy + Delta-G solvation = -4201.152899 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.64494 -40.20730 -39.42296 -37.87200 -35.68671 -34.45154 -33.96946 -32.82164 -31.67963 -30.91243 -30.51723 -28.51289 -27.56045 -26.35890 -24.47740 -23.72101 -23.17781 -21.99116 -21.61811 -20.57080 -19.48314 -18.73010 -18.36460 -17.18987 -16.67247 -16.50230 -16.44252 -16.27510 -15.52233 -15.25939 -14.95407 -14.88160 -14.60034 -14.36035 -14.33666 -14.03097 -13.88150 -13.72836 -13.41077 -13.28357 -13.20417 -13.01297 -12.59987 -12.55501 -12.25494 -12.19631 -11.79209 -11.49285 -11.31064 -10.96847 -10.85635 -10.78832 -10.59472 -10.31162 -10.19436 -9.97950 -9.56324 -9.52997 -9.05518 -9.04860 -8.55724 -8.17986 -8.00004 -6.31376 -3.82612 0.86641 1.70416 2.15208 2.40168 2.93803 3.02414 3.06679 3.08015 3.15029 3.73562 3.93680 4.06839 4.10138 4.24681 4.33550 4.49251 4.55884 4.60932 4.70999 4.79741 4.91333 4.99432 5.06879 5.08364 5.20801 5.29678 5.38685 5.40322 5.51446 5.58525 5.65407 5.69138 5.80704 5.85600 5.88319 5.95403 5.97035 6.03370 6.16587 6.34290 6.54158 6.73440 7.05444 7.15718 7.23714 7.41961 7.58280 7.75680 8.14459 8.59907 8.95055 9.42481 9.83133 10.81689 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018362 B = 0.002021 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.502399 B =13850.305575 C =14706.055026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.427 5.427 3 C 0.206 3.794 4 N -0.497 5.497 5 C 0.039 3.961 6 C -0.088 4.088 7 C 0.594 3.406 8 O -0.547 6.547 9 N -0.709 5.709 10 C 0.163 3.837 11 C -0.165 4.165 12 C -0.137 4.137 13 C 0.070 3.930 14 N -0.503 5.503 15 C 0.038 3.962 16 C 0.453 3.547 17 O -0.561 6.561 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.052 3.948 28 C -0.118 4.118 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.213 0.787 33 H 0.179 0.821 34 H 0.404 0.596 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.241 28.088 -10.496 30.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.107 5.107 3 C -0.077 4.077 4 N -0.214 5.214 5 C -0.115 4.115 6 C -0.205 4.205 7 C 0.380 3.620 8 O -0.426 6.426 9 N -0.360 5.360 10 C 0.040 3.960 11 C -0.166 4.166 12 C -0.158 4.158 13 C -0.058 4.058 14 N -0.225 5.225 15 C -0.094 4.094 16 C 0.239 3.761 17 O -0.443 6.443 18 N -0.230 5.230 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.705 3.295 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.076 4.076 28 C -0.156 4.156 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.230 0.770 33 H 0.196 0.804 34 H 0.239 0.761 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.107 0.893 39 H 0.133 0.867 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.688 27.998 -9.772 29.883 hybrid contribution -2.337 -0.246 -1.143 2.613 sum -6.026 27.753 -10.915 30.425 Atomic orbital electron populations 1.22346 0.75139 1.05966 1.04376 1.45285 1.08416 1.05768 1.51272 1.25192 0.85551 0.93690 1.03227 1.70174 1.19029 1.12099 1.20137 1.22670 0.95157 0.91401 1.02319 1.20770 0.91601 0.88879 1.19222 1.16784 0.85564 0.83168 0.76454 1.90796 1.17013 1.83982 1.50788 1.45722 1.09689 1.06280 1.74340 1.20356 0.94742 0.78134 1.02735 1.20813 0.98484 1.01799 0.95512 1.23247 0.98400 0.97017 0.97146 1.21408 0.93830 0.96181 0.94371 1.62299 1.47073 1.10643 1.02462 1.21947 0.94883 0.93195 0.99366 1.19663 0.84364 0.83786 0.88334 1.90527 1.38845 1.78088 1.36847 1.42220 1.34602 1.20344 1.25846 1.19420 1.20799 0.97626 1.05404 0.86254 1.25039 0.97939 0.95762 0.97449 1.69626 1.39028 1.10087 1.33381 0.86683 0.81715 0.78555 0.82512 1.19602 1.20214 1.19530 1.22329 0.94880 0.95626 0.94801 1.21046 0.98100 1.01337 0.95160 0.90054 0.89283 0.87468 0.77027 0.80425 0.76075 0.90692 0.90836 0.87199 0.89289 0.86720 0.92761 0.89336 0.79754 0.91636 0.90356 0.90146 0.90703 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 10.79 59.85 0.65 0.99 16 2 N -0.43 -3.37 3.17 -121.97 -0.39 -3.76 16 3 C 0.21 1.46 12.52 -90.58 -1.13 0.33 16 4 N -0.50 -4.76 11.20 -14.43 -0.16 -4.92 16 5 C 0.04 0.34 11.37 -17.47 -0.20 0.14 16 6 C -0.09 -0.82 6.91 -82.15 -0.57 -1.39 16 7 C 0.59 6.25 7.78 -12.82 -0.10 6.15 16 8 O -0.55 -7.31 14.83 5.20 0.08 -7.23 16 9 N -0.71 -6.11 5.53 -62.78 -0.35 -6.45 16 10 C 0.16 1.59 5.73 -5.20 -0.03 1.56 16 11 C -0.17 -1.65 4.60 -100.93 -0.46 -2.12 16 12 C -0.14 -1.58 8.96 -35.97 -0.32 -1.90 16 13 C 0.07 0.99 5.57 -5.28 -0.03 0.96 16 14 N -0.50 -7.40 4.77 -237.56 -1.13 -8.53 16 15 C 0.04 0.60 4.55 -4.98 -0.02 0.58 16 16 C 0.45 9.98 7.38 -10.99 -0.08 9.90 16 17 O -0.56 -14.46 13.99 5.55 0.08 -14.38 16 18 N -0.59 -13.85 5.09 -10.97 -0.06 -13.90 16 19 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 20 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.62 13.96 55.50 0.77 -24.84 16 23 Si 0.88 19.30 27.74 -169.99 -4.71 14.58 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -5.40 6.52 56.52 0.37 -5.04 16 27 C 0.05 0.55 6.03 -3.59 -0.02 0.53 16 28 C -0.12 -1.09 5.26 -28.03 -0.15 -1.23 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.11 0.80 6.30 -51.93 -0.33 0.48 16 32 H 0.21 0.60 8.06 -52.48 -0.42 0.18 16 33 H 0.18 1.06 7.46 -52.49 -0.39 0.66 16 34 H 0.40 2.64 7.41 -40.82 -0.30 2.34 16 35 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 36 H 0.07 0.79 7.85 -51.93 -0.41 0.39 16 37 H 0.11 1.20 7.81 -52.48 -0.41 0.79 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.11 2.06 5.76 -51.93 -0.30 1.76 16 40 H 0.05 0.80 5.99 -51.93 -0.31 0.49 16 41 H 0.09 1.26 8.09 -51.93 -0.42 0.84 16 42 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.08 0.73 8.08 -51.93 -0.42 0.32 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.74 7.13 -51.92 -0.37 0.37 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -35.96 384.37 -9.21 -45.17 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -6.41 Total: 11.60 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -2.72 Total: 6.88 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -1.31 Total: -62.41 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.15 Total: -21.61 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.96 -9.21 -45.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279591251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.630 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds