Wall clock time and date at job start Wed Apr 1 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34489 * 126.47085 * 2 1 4 4 N 1.30859 * 109.16271 * 180.25564 * 3 2 1 5 5 C 1.33323 * 109.68244 * 359.75777 * 4 3 2 6 6 C 1.36662 * 107.78769 * 0.02562 * 5 4 3 7 7 C 1.46760 * 126.84532 * 179.97438 * 6 5 4 8 8 O 1.21684 * 119.99825 * 184.90978 * 7 6 5 9 9 N 1.34771 * 120.00260 * 4.90271 * 7 6 5 10 10 C 1.46498 * 120.00506 * 174.55191 * 9 7 6 11 11 C 1.50697 * 109.47763 * 180.02562 * 10 9 7 12 12 C 1.29823 * 118.55710 * 94.99436 * 11 10 9 13 13 C 1.50140 * 123.28636 * 180.11724 * 12 11 10 14 14 N 1.46842 * 110.27286 * 343.21162 * 13 12 11 15 15 C 1.46902 * 110.99727 * 287.53293 * 14 13 12 16 16 C 1.50697 * 109.47468 * 293.95757 * 15 14 13 17 17 O 1.21291 * 119.99913 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00041 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00294 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99563 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00139 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99564 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99989 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47324 * 89.99843 * 23 21 19 25 25 H 1.48499 * 109.46769 * 209.99445 * 23 21 19 26 26 H 1.48491 * 109.47290 * 329.99707 * 23 21 19 27 27 C 1.47238 * 110.20872 * 50.92702 * 14 13 12 28 28 C 1.50304 * 118.55102 * 275.23717 * 11 10 9 29 29 H 1.08994 * 109.47447 * 272.02124 * 1 2 3 30 30 H 1.09005 * 109.47173 * 32.02194 * 1 2 3 31 31 H 1.09005 * 109.47394 * 152.01917 * 1 2 3 32 32 H 1.08003 * 125.42055 * 0.04973 * 3 2 1 33 33 H 1.07998 * 126.10434 * 180.02562 * 5 4 3 34 34 H 0.97004 * 120.00204 * 354.54784 * 9 7 6 35 35 H 1.09000 * 109.47180 * 59.99427 * 10 9 7 36 36 H 1.09004 * 109.46778 * 300.00542 * 10 9 7 37 37 H 1.08004 * 118.35179 * 0.40085 * 12 11 10 38 38 H 1.08997 * 109.33589 * 103.45423 * 13 12 11 39 39 H 1.09003 * 109.33689 * 223.12693 * 13 12 11 40 40 H 1.08997 * 109.47073 * 53.96199 * 15 14 13 41 41 H 1.09006 * 109.46805 * 173.95258 * 15 14 13 42 42 H 0.97007 * 119.99842 * 359.97438 * 18 16 15 43 43 H 0.97008 * 119.99357 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.63789 * 50.88708 * 27 14 13 45 45 H 1.09001 * 109.63695 * 171.29354 * 27 14 13 46 46 H 1.09006 * 109.56181 * 43.50522 * 28 11 10 47 47 H 1.09008 * 109.24766 * 283.69109 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0815 0.0000 4 7 3.5138 0.6922 -0.0055 5 6 3.5690 -0.6399 -0.0039 6 6 2.2862 -1.1109 0.0023 7 6 1.8649 -2.5167 0.0056 8 8 0.6840 -2.7982 -0.0790 9 7 2.7858 -3.4960 0.1021 10 6 2.3601 -4.8924 0.2256 11 6 3.5735 -5.7813 0.3169 12 6 4.0047 -6.1241 1.4925 13 6 5.2036 -7.0022 1.7067 14 7 5.5431 -7.7112 0.4664 15 6 4.5637 -8.7677 0.1790 16 6 4.6516 -9.8359 1.2383 17 8 5.4512 -9.7276 2.1439 18 7 3.8418 -10.9117 1.1794 19 6 3.9215 -11.8833 2.1434 20 1 4.6329 -11.7864 2.9502 21 6 3.0862 -12.9921 2.0829 22 7 3.1630 -13.9236 3.0067 23 14 1.8553 -13.1592 0.6878 24 1 2.4862 -13.8829 -0.4450 25 1 0.6703 -13.9184 1.1617 26 1 1.4308 -11.8092 0.2379 27 6 5.6374 -6.7601 -0.6537 28 6 4.2345 -6.2276 -0.9571 29 1 -0.3634 0.0362 1.0270 30 1 -0.3634 0.8713 -0.5449 31 1 -0.3634 -0.9076 -0.4822 32 1 1.9288 2.1080 0.0008 33 1 4.4672 -1.2396 -0.0071 34 1 3.7305 -3.2764 0.0897 35 1 1.7700 -5.1709 -0.6475 36 1 1.7556 -5.0097 1.1251 37 1 3.4717 -5.7631 2.3596 38 1 6.0500 -6.3884 2.0148 39 1 4.9828 -7.7304 2.4871 40 1 3.5604 -8.3417 0.1750 41 1 4.7766 -9.2049 -0.7966 42 1 3.2021 -10.9981 0.4553 43 1 2.5796 -14.6975 2.9646 44 1 6.2914 -5.9330 -0.3778 45 1 6.0381 -7.2668 -1.5317 46 1 4.3074 -5.3852 -1.6450 47 1 3.6379 -7.0173 -1.4140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279591251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:25 Heat of formation + Delta-G solvation = 0.339579 kcal Electronic energy + Delta-G solvation = -29768.518092 eV Core-core repulsion = 25566.145693 eV Total energy + Delta-G solvation = -4202.372398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.22302 -41.27115 -40.39674 -39.42812 -36.60320 -35.92199 -35.00696 -33.81476 -33.66824 -31.81405 -31.23217 -29.76803 -28.02400 -27.44570 -26.13937 -24.65176 -23.95107 -22.91315 -22.29221 -21.36399 -21.20202 -20.35099 -19.21493 -18.27530 -17.89628 -17.29716 -17.20604 -17.08547 -16.77293 -16.58130 -16.07492 -15.99773 -15.56806 -15.42277 -15.19758 -15.03442 -14.93446 -14.75414 -14.43587 -14.40226 -14.05943 -13.92813 -13.85196 -13.65527 -13.60161 -13.11209 -13.00678 -12.94733 -12.53574 -12.40114 -12.12800 -11.97118 -11.63188 -11.57370 -11.45729 -11.02187 -10.77187 -10.35924 -10.30176 -10.22493 -9.91028 -9.65779 -9.14577 -8.40068 -6.00132 0.23362 0.87905 1.30097 1.35468 1.43940 1.57813 1.79582 1.98650 2.23317 2.24611 2.39975 2.69997 3.15832 3.26386 3.51979 3.66060 3.75429 3.79265 3.93609 4.05122 4.07543 4.21029 4.27364 4.33761 4.38695 4.41585 4.45679 4.47701 4.58780 4.66681 4.68749 4.75910 4.79334 4.98797 5.05965 5.10696 5.12272 5.23193 5.42342 5.46801 5.54780 5.81516 5.93902 6.05819 6.10040 6.22904 6.36508 6.61666 6.84214 6.90643 7.03757 7.42306 7.99705 8.77543 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018362 B = 0.002021 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.502399 B =13850.305575 C =14706.055026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.433 5.433 3 C 0.217 3.783 4 N -0.532 5.532 5 C 0.042 3.958 6 C -0.114 4.114 7 C 0.593 3.407 8 O -0.581 6.581 9 N -0.697 5.697 10 C 0.168 3.832 11 C -0.139 4.139 12 C -0.153 4.153 13 C 0.077 3.923 14 N -0.527 5.527 15 C 0.053 3.947 16 C 0.452 3.548 17 O -0.605 6.605 18 N -0.594 5.594 19 C -0.324 4.324 20 H 0.056 0.944 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.256 1.256 25 H -0.277 1.277 26 H -0.233 1.233 27 C 0.054 3.946 28 C -0.116 4.116 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.252 0.748 33 H 0.198 0.802 34 H 0.416 0.584 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.119 0.881 42 H 0.388 0.612 43 H 0.278 0.722 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.540 30.771 -14.173 34.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.113 5.113 3 C -0.065 4.065 4 N -0.250 5.250 5 C -0.113 4.113 6 C -0.231 4.231 7 C 0.381 3.619 8 O -0.463 6.463 9 N -0.348 5.348 10 C 0.045 3.955 11 C -0.140 4.140 12 C -0.174 4.174 13 C -0.051 4.051 14 N -0.249 5.249 15 C -0.078 4.078 16 C 0.240 3.760 17 O -0.489 6.489 18 N -0.236 5.236 19 C -0.453 4.453 20 H 0.074 0.926 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.783 3.217 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.156 1.156 27 C -0.073 4.073 28 C -0.154 4.154 29 H 0.104 0.896 30 H 0.142 0.858 31 H 0.102 0.898 32 H 0.268 0.732 33 H 0.215 0.785 34 H 0.253 0.747 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.137 0.863 42 H 0.223 0.777 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.119 0.881 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.958 30.714 -13.465 33.900 hybrid contribution -1.804 -0.952 0.096 2.042 sum -6.762 29.762 -13.369 33.320 Atomic orbital electron populations 1.22457 0.73970 1.06397 1.05006 1.45516 1.09257 1.05573 1.50983 1.25996 0.84877 0.94923 1.00669 1.70205 1.20504 1.12501 1.21807 1.23053 0.95635 0.91511 1.01055 1.20731 0.92310 0.88741 1.21294 1.16979 0.85187 0.83893 0.75821 1.90779 1.18397 1.84533 1.52603 1.45556 1.10143 1.05544 1.73606 1.20229 0.94398 0.78646 1.02212 1.20875 0.97522 1.00194 0.95415 1.22985 0.98265 0.98151 0.98005 1.21131 0.95355 0.95386 0.93253 1.62253 1.46908 1.11794 1.03968 1.21836 0.96526 0.91752 0.97724 1.20945 0.82391 0.84049 0.88660 1.90516 1.40355 1.79027 1.38990 1.42060 1.35846 1.20041 1.25627 1.18986 1.20697 0.99978 1.05670 0.92586 1.26094 1.00085 0.94452 1.00872 1.69810 1.40567 1.11039 1.36182 0.85391 0.77818 0.80431 0.78063 1.18053 1.20181 1.15634 1.22454 0.96071 0.95220 0.93594 1.21090 0.97015 1.02474 0.94798 0.89562 0.85846 0.89764 0.73192 0.78495 0.74688 0.90601 0.92089 0.87289 0.88608 0.91499 0.90807 0.86322 0.77672 0.91247 0.89036 0.88644 0.88054 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 10.79 127.77 1.38 1.96 16 2 N -0.43 -6.06 3.17 -539.81 -1.71 -7.77 16 3 C 0.22 2.53 12.52 180.33 2.26 4.79 16 4 N -0.53 -9.13 11.20 -199.56 -2.24 -11.36 16 5 C 0.04 0.66 11.37 84.10 0.96 1.62 16 6 C -0.11 -1.99 6.91 40.01 0.28 -1.71 16 7 C 0.59 11.86 7.78 86.47 0.67 12.53 16 8 O -0.58 -15.30 14.83 -4.30 -0.06 -15.36 16 9 N -0.70 -10.69 5.53 -470.75 -2.61 -13.30 16 10 C 0.17 2.95 5.73 85.63 0.49 3.44 16 11 C -0.14 -2.43 4.60 -15.40 -0.07 -2.50 16 12 C -0.15 -3.37 8.96 26.68 0.24 -3.13 16 13 C 0.08 2.17 5.57 85.39 0.48 2.65 16 14 N -0.53 -14.63 4.77 -905.51 -4.32 -18.95 16 15 C 0.05 1.58 4.55 85.56 0.39 1.97 16 16 C 0.45 20.16 7.38 87.66 0.65 20.81 16 17 O -0.60 -32.87 13.99 -3.06 -0.04 -32.91 16 18 N -0.59 -27.95 5.09 -306.99 -1.56 -29.51 16 19 C -0.32 -18.97 10.16 84.04 0.85 -18.12 16 20 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 21 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 22 N -0.94 -56.63 13.96 21.66 0.30 -56.33 16 23 Si 0.96 39.03 27.74 68.60 1.90 40.93 16 24 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 25 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 27 C 0.05 0.93 6.03 86.27 0.52 1.45 16 28 C -0.12 -1.64 5.26 29.75 0.16 -1.49 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.12 0.22 8.14 -2.38 -0.02 0.20 16 31 H 0.08 1.22 6.30 -2.38 -0.02 1.21 16 32 H 0.25 0.48 8.06 -2.91 -0.02 0.45 16 33 H 0.20 1.91 7.46 -2.91 -0.02 1.89 16 34 H 0.42 4.39 7.41 -92.71 -0.69 3.70 16 35 H 0.08 1.38 8.13 -2.39 -0.02 1.36 16 36 H 0.06 1.26 7.85 -2.38 -0.02 1.24 16 37 H 0.11 2.39 7.81 -2.91 -0.02 2.37 16 38 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.07 2.56 5.76 -2.39 -0.01 2.54 16 40 H 0.07 1.96 5.99 -2.39 -0.01 1.94 16 41 H 0.12 2.90 8.09 -2.38 -0.02 2.88 16 42 H 0.39 15.20 5.76 -92.70 -0.53 14.67 16 43 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 44 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 45 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 47 H 0.08 1.18 7.13 -2.38 -0.02 1.16 16 Total: -1.00 -85.76 384.37 -0.88 -86.64 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -0.25 Total: 34.11 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 9.71 Total: 23.81 kcal Atomic # 7 Polarization: -125.09 SS G_CDS: -12.13 Total: -137.22 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -0.11 Total: -48.27 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 1.90 Total: 40.93 kcal Total: -85.76 -0.88 -86.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279591251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.982 kcal (2) G-P(sol) polarization free energy of solvation -85.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds