Wall clock time and date at job start Wed Apr 1 2020 05:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39906 * 125.75531 * 2 1 4 4 C 1.30355 * 109.14819 * 180.02562 * 3 2 1 5 5 C 1.41369 * 108.16392 * 0.02562 * 4 3 2 6 6 C 1.47012 * 126.48869 * 180.02562 * 5 4 3 7 7 O 1.21661 * 119.99656 * 234.60212 * 6 5 4 8 8 N 1.34773 * 120.00339 * 54.60364 * 6 5 4 9 9 C 1.46508 * 119.99788 * 5.53638 * 8 6 5 10 10 C 1.52994 * 109.47183 * 94.71508 * 9 8 6 11 11 O 1.42897 * 109.47252 * 65.00124 * 10 9 8 12 12 C 1.46498 * 120.00476 * 185.53542 * 8 6 5 13 13 C 1.52994 * 109.47082 * 89.99482 * 12 8 6 14 14 N 1.46506 * 109.47072 * 180.02562 * 13 12 8 15 15 C 1.36936 * 119.99896 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00051 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99756 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00194 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99991 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47091 * 59.99732 * 19 17 15 21 21 H 1.48492 * 109.47355 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47282 * 300.00411 * 19 17 15 23 23 C 1.34735 * 125.76162 * 180.02562 * 2 1 3 24 24 N 1.38993 * 126.40471 * 0.22854 * 23 2 1 25 25 C 1.36734 * 125.68592 * 134.38089 * 24 23 2 26 26 C 1.34793 * 108.18532 * 179.82469 * 25 24 23 27 27 C 1.41022 * 107.49901 * 0.42798 * 26 25 24 28 28 C 1.34789 * 107.50683 * 359.73059 * 27 26 25 29 29 H 1.09006 * 109.47024 * 269.95363 * 1 2 3 30 30 H 1.09004 * 109.47273 * 29.95374 * 1 2 3 31 31 H 1.09001 * 109.46968 * 149.95720 * 1 2 3 32 32 H 1.08000 * 125.92127 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.46736 * 214.71877 * 9 8 6 34 34 H 1.09002 * 109.46945 * 334.71021 * 9 8 6 35 35 H 1.08999 * 109.47063 * 185.00192 * 10 9 8 36 36 H 1.09004 * 109.47353 * 304.99939 * 10 9 8 37 37 H 0.96695 * 114.00352 * 180.02562 * 11 10 9 38 38 H 1.08997 * 109.47280 * 210.00324 * 12 8 6 39 39 H 1.09004 * 109.46930 * 330.00184 * 12 8 6 40 40 H 1.08997 * 109.47750 * 300.00554 * 13 12 8 41 41 H 1.09001 * 109.47389 * 60.00628 * 13 12 8 42 42 H 0.96999 * 119.99843 * 0.02562 * 14 13 12 43 43 H 0.96995 * 120.00022 * 180.02562 * 18 17 15 44 44 H 1.07999 * 125.90806 * 359.97438 * 25 24 23 45 45 H 1.07998 * 126.25040 * 180.15967 * 26 25 24 46 46 H 1.07998 * 126.24628 * 179.75030 * 27 26 25 47 47 H 1.08000 * 125.90504 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1354 0.0000 4 6 3.5317 0.7628 -0.0006 5 6 3.5701 -0.6504 -0.0015 6 6 4.7753 -1.4921 -0.0019 7 8 4.9247 -2.3402 -0.8613 8 7 5.7147 -1.3245 0.9498 9 6 5.4809 -0.3894 2.0532 10 6 4.9132 -1.1491 3.2538 11 8 5.8911 -2.0706 3.7401 12 6 6.9697 -2.0771 0.8811 13 6 8.0011 -1.2771 0.0831 14 7 9.2560 -2.0301 0.0139 15 6 10.3314 -1.5086 -0.6543 16 1 10.2545 -0.5423 -1.1307 17 6 11.5202 -2.2223 -0.7204 18 7 11.6138 -3.4000 -0.1403 19 14 12.9871 -1.5112 -1.6325 20 1 13.3778 -0.2201 -1.0114 21 1 14.1257 -2.4613 -1.5559 22 1 12.6241 -1.2863 -3.0548 23 6 2.2524 -1.0933 -0.0005 24 7 1.8267 -2.4165 -0.0055 25 6 2.3245 -3.4114 -0.8005 26 6 1.6626 -4.5500 -0.5133 27 6 0.7153 -4.2491 0.4871 28 6 0.8366 -2.9389 0.7794 29 1 -0.3633 -0.0008 1.0277 30 1 -0.3634 0.8904 -0.5131 31 1 -0.3633 -0.8896 -0.5145 32 1 4.3888 1.4198 -0.0011 33 1 6.4219 0.0835 2.3343 34 1 4.7704 0.3746 1.7376 35 1 4.6563 -0.4421 4.0427 36 1 4.0198 -1.6944 2.9495 37 1 5.5988 -2.5883 4.5027 38 1 7.3452 -2.2503 1.8896 39 1 6.7930 -3.0341 0.3899 40 1 7.6256 -1.1040 -0.9254 41 1 8.1779 -0.3202 0.5742 42 1 9.3249 -2.8981 0.4414 43 1 12.4446 -3.8985 -0.1861 44 1 3.1133 -3.3042 -1.5303 45 1 1.8249 -5.5154 -0.9695 46 1 0.0199 -4.9420 0.9371 47 1 0.2528 -2.3958 1.5078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279782576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:34 Heat of formation + Delta-G solvation = 85.053364 kcal Electronic energy + Delta-G solvation = -31215.515980 eV Core-core repulsion = 27016.817047 eV Total energy + Delta-G solvation = -4198.698933 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.47233 -40.83160 -39.46850 -37.15029 -35.49629 -34.41883 -33.95495 -33.04010 -31.43928 -29.49306 -29.31573 -29.06446 -27.90720 -26.90442 -24.01165 -23.33112 -22.68098 -22.14026 -21.50193 -20.45962 -20.25121 -19.25253 -18.21117 -17.75556 -17.09659 -16.93549 -16.50659 -16.00690 -15.65539 -15.17593 -14.75938 -14.55060 -14.43256 -14.29325 -14.07766 -13.75450 -13.73420 -13.44776 -13.37739 -13.09309 -13.07982 -12.95650 -12.64521 -12.59991 -12.37783 -12.13390 -11.65669 -11.43816 -11.12202 -10.85486 -10.82809 -10.54105 -10.29101 -10.17566 -10.07231 -9.81044 -9.63052 -9.34737 -8.78137 -8.67613 -8.48182 -8.37327 -6.83580 -5.67400 -2.96132 0.82334 1.48176 1.86082 2.14248 2.59297 2.79641 2.82877 3.20482 3.50575 3.54324 3.55957 3.94462 4.13936 4.43503 4.54556 4.58668 4.65648 4.69162 4.85398 4.87430 4.91494 5.00104 5.06721 5.15517 5.21654 5.29738 5.37275 5.43716 5.63566 5.65899 5.83121 5.94241 6.00554 6.02578 6.02853 6.07886 6.17315 6.34219 6.63472 6.65974 6.80582 6.86093 7.03302 7.06907 7.14164 7.49188 7.62404 7.77441 8.31681 8.51292 9.61858 10.19602 10.54802 11.55550 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013748 B = 0.002730 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.166663 B =10255.716641 C =10479.198401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.365 5.365 3 N -0.272 5.272 4 C 0.093 3.907 5 C -0.269 4.269 6 C 0.591 3.409 7 O -0.527 6.527 8 N -0.588 5.588 9 C 0.106 3.894 10 C 0.063 3.937 11 O -0.560 6.560 12 C 0.112 3.888 13 C 0.143 3.857 14 N -0.729 5.729 15 C -0.236 4.236 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.933 5.933 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.340 3.660 24 N -0.395 5.395 25 C 0.033 3.967 26 C -0.200 4.200 27 C -0.172 4.172 28 C -0.035 4.035 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.202 0.798 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.040 0.960 37 H 0.376 0.624 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.020 0.980 41 H 0.017 0.983 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.185 0.815 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.751 5.795 7.318 30.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.148 5.148 3 N -0.092 5.092 4 C -0.094 4.094 5 C -0.285 4.285 6 C 0.377 3.623 7 O -0.404 6.404 8 N -0.320 5.320 9 C -0.018 4.018 10 C -0.016 4.016 11 O -0.365 6.365 12 C -0.010 4.010 13 C 0.015 3.985 14 N -0.374 5.374 15 C -0.368 4.368 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.582 5.582 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C 0.119 3.881 24 N -0.074 5.074 25 C -0.092 4.092 26 C -0.223 4.223 27 C -0.197 4.197 28 C -0.159 4.159 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.219 0.781 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.223 0.777 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.038 0.962 41 H 0.034 0.966 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.202 0.798 45 H 0.164 0.836 46 H 0.161 0.839 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -29.078 6.994 6.279 30.559 hybrid contribution 0.903 -0.696 0.238 1.165 sum -28.175 6.298 6.517 29.597 Atomic orbital electron populations 1.22073 0.73307 1.05396 1.03979 1.48541 1.07170 1.02305 1.56736 1.77279 1.01829 1.05037 1.25079 1.23963 0.95412 0.92897 0.97101 1.19944 0.91639 0.94534 1.22432 1.17058 0.81449 0.82324 0.81449 1.90766 1.77790 1.34548 1.37263 1.47602 1.17631 1.43057 1.23671 1.21781 1.02902 0.91532 0.85612 1.22600 0.91156 0.92063 0.95800 1.86594 1.42021 1.56027 1.51860 1.21761 0.81601 0.95382 1.02264 1.20914 0.86796 0.94186 0.96640 1.42190 1.08032 1.21727 1.65406 1.19162 0.90162 1.01423 1.26015 0.91303 1.24738 0.98059 0.96871 1.01365 1.69655 1.26542 1.13210 1.48810 0.86252 0.82427 0.77811 0.79604 1.21326 1.21696 1.21287 1.17757 0.89279 0.80205 1.00896 1.40685 1.30824 1.03413 1.32436 1.22682 1.01738 0.86056 0.98753 1.21090 1.00352 0.98238 1.02643 1.21027 1.02628 0.94556 1.01503 1.21898 0.96719 0.95576 1.01746 0.90061 0.88170 0.89138 0.78140 0.88979 0.88913 0.93037 0.94168 0.77735 0.89097 0.89943 0.96231 0.96553 0.78206 0.93494 0.79839 0.83637 0.83936 0.82193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 10.57 59.85 0.63 1.14 16 2 N -0.36 -3.54 3.99 -66.65 -0.27 -3.81 16 3 N -0.27 -2.88 12.48 30.86 0.39 -2.49 16 4 C 0.09 0.98 9.88 -16.99 -0.17 0.81 16 5 C -0.27 -3.45 5.00 -104.86 -0.52 -3.98 16 6 C 0.59 9.41 7.23 -12.71 -0.09 9.32 16 7 O -0.53 -10.21 13.82 5.22 0.07 -10.14 16 8 N -0.59 -8.89 2.46 -175.11 -0.43 -9.32 16 9 C 0.11 1.20 5.80 -4.04 -0.02 1.18 16 10 C 0.06 0.64 7.39 37.15 0.27 0.92 16 11 O -0.56 -6.64 12.06 -35.23 -0.42 -7.07 16 12 C 0.11 2.08 5.38 -4.05 -0.02 2.06 16 13 C 0.14 3.15 6.58 -4.04 -0.03 3.12 16 14 N -0.73 -19.69 5.60 -59.91 -0.34 -20.03 16 15 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 16 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -29.20 13.06 55.49 0.72 -28.48 16 19 Si 0.91 23.14 29.55 -169.99 -5.02 18.11 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 C 0.34 4.00 7.12 -153.04 -1.09 2.91 16 24 N -0.40 -4.60 2.86 -62.23 -0.18 -4.78 16 25 C 0.03 0.44 10.13 -16.59 -0.17 0.27 16 26 C -0.20 -2.27 10.86 -39.75 -0.43 -2.70 16 27 C -0.17 -1.65 10.86 -39.75 -0.43 -2.08 16 28 C -0.04 -0.33 10.02 -16.59 -0.17 -0.50 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.46 7.48 -51.93 -0.39 0.07 16 32 H 0.20 1.60 7.82 -52.49 -0.41 1.19 16 33 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 34 H 0.09 0.85 4.70 -51.93 -0.24 0.61 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.38 2.82 9.12 45.56 0.42 3.23 16 38 H 0.09 1.70 6.70 -51.93 -0.35 1.35 16 39 H 0.08 1.71 7.35 -51.93 -0.38 1.33 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.38 10.85 7.67 -40.82 -0.31 10.54 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.18 2.74 6.18 -52.49 -0.32 2.41 16 45 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 46 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.16 1.02 7.93 -52.49 -0.42 0.60 16 LS Contribution 393.68 15.07 5.93 5.93 Total: -1.00 -37.62 393.68 -7.79 -45.40 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -5.76 Total: 11.79 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -2.48 Total: 4.87 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -0.10 Total: -68.90 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.35 Total: -17.21 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.62 -7.79 -45.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279782576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.454 kcal (2) G-P(sol) polarization free energy of solvation -37.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds