Wall clock time and date at job start Wed Apr 1 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46903 * 110.99875 * 2 1 4 4 C 1.50709 * 109.46624 * 66.04768 * 3 2 1 5 5 O 1.21289 * 120.00486 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99774 * 179.97438 * 4 3 2 7 7 C 1.37096 * 120.00383 * 180.02562 * 6 4 3 8 8 H 1.08001 * 119.99561 * 359.97438 * 7 6 4 9 9 C 1.38944 * 120.00260 * 179.97438 * 7 6 4 10 10 N 1.31410 * 120.00255 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99790 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47278 * 60.00363 * 11 9 7 13 13 H 1.48505 * 109.46956 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47373 * 299.99948 * 11 9 7 15 15 C 1.46900 * 110.99770 * 236.05040 * 2 1 3 16 16 C 1.52998 * 109.47056 * 293.95015 * 15 2 1 17 17 H 1.08996 * 110.00042 * 64.64731 * 16 15 2 18 18 C 1.54328 * 109.88281 * 185.74149 * 16 15 2 19 19 C 1.55147 * 102.94456 * 141.61070 * 18 16 15 20 20 C 1.55137 * 101.48717 * 324.33379 * 19 18 16 21 21 N 1.47025 * 109.88390 * 303.54857 * 16 15 2 22 22 C 1.34774 * 125.64782 * 61.60728 * 21 16 15 23 23 O 1.21525 * 119.99745 * 359.97438 * 22 21 16 24 24 C 1.48147 * 120.00224 * 180.02562 * 22 21 16 25 25 C 1.39720 * 120.18648 * 180.02562 * 24 22 21 26 26 C 1.38823 * 117.89741 * 180.02562 * 25 24 22 27 27 C 1.38569 * 118.07165 * 359.97438 * 26 25 24 28 28 N 1.32168 * 120.06411 * 0.28259 * 27 26 25 29 29 N 1.28346 * 122.30620 * 359.41227 * 28 27 26 30 30 H 1.09002 * 109.47064 * 183.95131 * 1 2 3 31 31 H 1.08996 * 109.46991 * 303.95336 * 1 2 3 32 32 H 1.09004 * 109.47047 * 63.95039 * 1 2 3 33 33 H 1.08994 * 109.47538 * 186.04504 * 3 2 1 34 34 H 1.09000 * 109.47545 * 306.05225 * 3 2 1 35 35 H 0.97005 * 119.99842 * 359.97438 * 6 4 3 36 36 H 0.97003 * 120.00424 * 179.97438 * 10 9 7 37 37 H 1.09005 * 109.46531 * 173.95229 * 15 2 1 38 38 H 1.09001 * 109.47278 * 53.95206 * 15 2 1 39 39 H 1.08997 * 110.71674 * 259.97822 * 18 16 15 40 40 H 1.09005 * 110.71801 * 23.24307 * 18 16 15 41 41 H 1.08998 * 111.00622 * 82.56768 * 19 18 16 42 42 H 1.09000 * 111.00843 * 206.38901 * 19 18 16 43 43 H 1.09000 * 110.49242 * 278.45503 * 20 19 18 44 44 H 1.08997 * 110.34558 * 156.05843 * 20 19 18 45 45 H 1.08002 * 121.04731 * 359.97438 * 25 24 22 46 46 H 1.08003 * 120.96078 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.96315 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2986 5 8 1.0054 1.4452 2.1413 6 7 2.0188 3.3198 1.5239 7 6 1.6931 3.9343 2.7054 8 1 1.1302 3.3986 3.4554 9 6 2.0873 5.2462 2.9379 10 7 2.7719 5.8982 2.0251 11 14 1.6429 6.0837 4.5474 12 1 2.2337 5.3257 5.6794 13 1 2.1756 7.4699 4.5477 14 1 0.1656 6.1216 4.6943 15 6 1.9954 -0.7659 -1.1377 16 6 1.6315 -2.2425 -0.9704 17 1 0.5495 -2.3670 -1.0138 18 6 2.3008 -3.0773 -2.0827 19 6 2.7194 -4.3736 -1.3401 20 6 3.1128 -3.8178 0.0538 21 7 2.1410 -2.7406 0.3156 22 6 1.7833 -2.2840 1.5321 23 8 0.9731 -1.3834 1.6290 24 6 2.3784 -2.8793 2.7513 25 6 2.0099 -2.4093 4.0144 26 6 2.5975 -3.0008 5.1244 27 6 3.5119 -4.0201 4.9127 28 7 3.8070 -4.3998 3.6815 29 7 3.2649 -3.8627 2.6496 30 1 -0.3633 -1.0252 0.0708 31 1 -0.3633 0.5740 0.8524 32 1 -0.3633 0.4513 -0.9233 33 1 3.0797 1.3445 -0.1082 34 1 1.5611 1.9275 -0.8308 35 1 2.5248 3.8008 0.8504 36 1 3.0468 6.8143 2.1872 37 1 3.0798 -0.6609 -1.1756 38 1 1.5611 -0.3871 -2.0628 39 1 1.5896 -3.3008 -2.8779 40 1 3.1748 -2.5607 -2.4795 41 1 1.8829 -5.0685 -1.2654 42 1 3.5734 -4.8444 -1.8270 43 1 4.1264 -3.4175 0.0328 44 1 3.0277 -4.5977 0.8105 45 1 1.2913 -1.6105 4.1236 46 1 2.3484 -2.6764 6.1240 47 1 3.9877 -4.5014 5.7544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281965675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:02 Heat of formation + Delta-G solvation = 45.528007 kcal Electronic energy + Delta-G solvation = -31808.337649 eV Core-core repulsion = 27607.924768 eV Total energy + Delta-G solvation = -4200.412881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.16118 -39.85334 -38.21387 -37.17643 -35.85723 -33.69977 -33.28863 -32.77546 -31.20500 -31.11132 -30.21422 -27.58130 -26.00920 -25.63353 -24.57423 -24.47455 -23.06171 -21.37433 -21.28055 -19.32096 -18.95972 -17.84024 -17.67961 -17.03566 -16.66449 -16.54608 -15.91680 -15.37562 -15.11626 -14.84126 -14.61295 -14.34240 -14.13754 -13.88056 -13.77329 -13.55154 -13.35433 -13.22393 -13.18125 -12.61834 -12.44805 -12.26790 -11.88823 -11.64177 -11.50566 -11.31966 -11.17395 -11.10742 -11.00618 -10.86718 -10.68866 -10.58882 -10.38842 -10.32016 -10.12530 -10.00818 -9.77062 -9.34433 -9.26385 -8.49409 -8.06659 -7.82601 -7.37411 -6.31892 -3.71740 0.50200 0.72331 2.94037 3.05190 3.24464 3.29119 3.33448 3.82107 3.89709 4.07553 4.12462 4.31227 4.36245 4.46234 4.59892 4.67088 4.77016 4.81545 4.95068 5.05464 5.15471 5.26795 5.30162 5.36121 5.43320 5.59482 5.62774 5.67770 5.69487 5.78772 5.85431 5.91277 5.96337 5.98343 6.07076 6.10305 6.16201 6.21703 6.27383 6.46503 6.60730 6.95984 7.56536 7.63336 7.74814 7.78790 8.17970 8.43602 8.64597 8.75798 9.29956 9.68378 10.22867 10.86518 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.003552 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.325247 B = 7881.723818 C = 9867.188785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.489 5.489 3 C 0.042 3.958 4 C 0.448 3.552 5 O -0.559 6.559 6 N -0.574 5.574 7 C -0.293 4.293 8 H 0.100 0.900 9 C 0.019 3.981 10 N -0.906 5.906 11 Si 0.928 3.072 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.041 3.959 16 C 0.147 3.853 17 H 0.074 0.926 18 C -0.127 4.127 19 C -0.135 4.135 20 C 0.102 3.898 21 N -0.599 5.599 22 C 0.568 3.432 23 O -0.430 6.430 24 C 0.042 3.958 25 C -0.059 4.059 26 C -0.124 4.124 27 C 0.046 3.954 28 N -0.253 5.253 29 N -0.218 5.218 30 H 0.060 0.940 31 H 0.091 0.909 32 H -0.009 1.009 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.390 0.610 36 H 0.270 0.730 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.167 0.833 46 H 0.155 0.845 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.265 -20.777 -4.488 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.213 5.213 3 C -0.089 4.089 4 C 0.233 3.767 5 O -0.441 6.441 6 N -0.212 5.212 7 C -0.423 4.423 8 H 0.118 0.882 9 C -0.181 4.181 10 N -0.549 5.549 11 Si 0.755 3.245 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.200 1.200 15 C -0.089 4.089 16 C 0.043 3.957 17 H 0.092 0.908 18 C -0.166 4.166 19 C -0.173 4.173 20 C -0.021 4.021 21 N -0.336 5.336 22 C 0.351 3.649 23 O -0.296 6.296 24 C -0.104 4.104 25 C -0.089 4.089 26 C -0.153 4.153 27 C -0.116 4.116 28 N -0.096 5.096 29 N -0.065 5.065 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.010 0.990 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.222 0.778 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.118 0.882 45 H 0.185 0.815 46 H 0.173 0.827 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.404 -21.641 -4.295 22.108 hybrid contribution -0.626 2.287 0.606 2.447 sum 0.778 -19.354 -3.689 19.718 Atomic orbital electron populations 1.22324 0.86382 1.01589 0.99276 1.61978 1.09128 1.11240 1.38962 1.21889 1.00082 0.89990 0.96951 1.19777 0.85126 0.82733 0.89044 1.90517 1.42727 1.64197 1.46611 1.41882 1.50246 1.10990 1.18043 1.19605 1.32526 0.95382 0.94758 0.88173 1.25207 0.97159 0.96694 0.99070 1.69608 1.38608 1.12186 1.34451 0.85965 0.78808 0.77946 0.81734 1.20077 1.21089 1.20039 1.22659 1.00282 0.93293 0.92643 1.21585 0.98418 0.92857 0.82843 0.90843 1.22676 1.01096 0.95981 0.96845 1.22851 1.01753 0.96922 0.95754 1.22598 0.92281 0.90516 0.96742 1.48010 1.43937 1.37347 1.04293 1.17112 0.83918 0.82931 0.80975 1.91116 1.30558 1.23839 1.84074 1.23107 0.96151 0.95275 0.95864 1.22585 0.97282 0.97764 0.91221 1.22464 0.96096 0.95774 1.00985 1.24381 0.95028 0.94774 0.97465 1.73070 1.18281 1.21605 0.96609 1.73358 1.04765 1.05786 1.22639 0.92101 0.89006 0.99036 0.90332 0.94236 0.77763 0.92041 0.91076 0.94698 0.90257 0.90410 0.90895 0.90114 0.91900 0.88216 0.81522 0.82732 0.81021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.94 7.00 60.07 0.42 1.36 16 2 N -0.49 -8.76 1.86 -244.36 -0.45 -9.21 16 3 C 0.04 0.83 5.45 -4.97 -0.03 0.80 16 4 C 0.45 11.02 7.47 -10.98 -0.08 10.94 16 5 O -0.56 -15.25 13.17 0.79 0.01 -15.24 16 6 N -0.57 -15.08 5.29 -10.96 -0.06 -15.14 16 7 C -0.29 -8.36 9.68 -14.94 -0.14 -8.51 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 C 0.02 0.53 5.50 -17.47 -0.10 0.44 16 10 N -0.91 -25.39 13.05 55.50 0.72 -24.67 16 11 Si 0.93 21.55 29.55 -169.99 -5.02 16.53 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.04 0.56 4.54 -3.82 -0.02 0.54 16 16 C 0.15 1.76 2.89 -66.95 -0.19 1.56 16 17 H 0.07 0.92 6.81 -51.93 -0.35 0.57 16 18 C -0.13 -1.06 6.47 -24.90 -0.16 -1.23 16 19 C -0.13 -1.08 7.10 -24.46 -0.17 -1.25 16 20 C 0.10 1.12 5.97 -2.41 -0.01 1.10 16 21 N -0.60 -8.10 3.06 -163.86 -0.50 -8.60 16 22 C 0.57 9.26 7.41 -12.19 -0.09 9.17 16 23 O -0.43 -8.27 9.72 0.58 0.01 -8.27 16 24 C 0.04 0.63 6.80 -82.83 -0.56 0.07 16 25 C -0.06 -0.81 9.73 -38.81 -0.38 -1.19 16 26 C -0.12 -1.27 10.20 -39.24 -0.40 -1.67 16 27 C 0.05 0.46 11.31 -17.28 -0.20 0.27 16 28 N -0.25 -3.27 11.51 30.58 0.35 -2.92 16 29 N -0.22 -3.07 7.82 33.32 0.26 -2.81 16 30 H 0.06 1.05 5.47 -51.93 -0.28 0.77 16 31 H 0.09 2.04 5.82 -51.93 -0.30 1.74 16 32 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 33 H 0.08 1.43 7.93 -51.93 -0.41 1.02 16 34 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.39 9.93 7.90 -40.82 -0.32 9.60 16 36 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 38 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.61 7.79 -51.93 -0.40 0.21 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.10 1.16 5.89 -51.93 -0.31 0.85 16 45 H 0.17 2.45 7.72 -52.49 -0.41 2.04 16 46 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 47 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -34.08 375.59 -7.65 -41.73 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.51 Total: 10.53 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: -2.12 Total: 12.41 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: 0.32 Total: -63.35 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.02 Total: -23.51 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.08 -7.65 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281965675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.259 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds