Wall clock time and date at job start Wed Apr 1 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46903 * 110.99875 * 2 1 4 4 C 1.50709 * 109.46624 * 66.04768 * 3 2 1 5 5 O 1.21289 * 120.00486 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99774 * 179.97438 * 4 3 2 7 7 C 1.37096 * 120.00383 * 180.02562 * 6 4 3 8 8 H 1.08001 * 119.99561 * 359.97438 * 7 6 4 9 9 C 1.38944 * 120.00260 * 179.97438 * 7 6 4 10 10 N 1.31410 * 120.00255 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99790 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47278 * 60.00363 * 11 9 7 13 13 H 1.48505 * 109.46956 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47373 * 299.99948 * 11 9 7 15 15 C 1.46900 * 110.99770 * 236.05040 * 2 1 3 16 16 C 1.52998 * 109.47056 * 293.95015 * 15 2 1 17 17 H 1.08996 * 110.00042 * 64.64731 * 16 15 2 18 18 C 1.54328 * 109.88281 * 185.74149 * 16 15 2 19 19 C 1.55147 * 102.94456 * 141.61070 * 18 16 15 20 20 C 1.55137 * 101.48717 * 324.33379 * 19 18 16 21 21 N 1.47025 * 109.88390 * 303.54857 * 16 15 2 22 22 C 1.34774 * 125.64782 * 61.60728 * 21 16 15 23 23 O 1.21525 * 119.99745 * 359.97438 * 22 21 16 24 24 C 1.48147 * 120.00224 * 180.02562 * 22 21 16 25 25 C 1.39720 * 120.18648 * 180.02562 * 24 22 21 26 26 C 1.38823 * 117.89741 * 180.02562 * 25 24 22 27 27 C 1.38569 * 118.07165 * 359.97438 * 26 25 24 28 28 N 1.32168 * 120.06411 * 0.28259 * 27 26 25 29 29 N 1.28346 * 122.30620 * 359.41227 * 28 27 26 30 30 H 1.09002 * 109.47064 * 183.95131 * 1 2 3 31 31 H 1.08996 * 109.46991 * 303.95336 * 1 2 3 32 32 H 1.09004 * 109.47047 * 63.95039 * 1 2 3 33 33 H 1.08994 * 109.47538 * 186.04504 * 3 2 1 34 34 H 1.09000 * 109.47545 * 306.05225 * 3 2 1 35 35 H 0.97005 * 119.99842 * 359.97438 * 6 4 3 36 36 H 0.97003 * 120.00424 * 179.97438 * 10 9 7 37 37 H 1.09005 * 109.46531 * 173.95229 * 15 2 1 38 38 H 1.09001 * 109.47278 * 53.95206 * 15 2 1 39 39 H 1.08997 * 110.71674 * 259.97822 * 18 16 15 40 40 H 1.09005 * 110.71801 * 23.24307 * 18 16 15 41 41 H 1.08998 * 111.00622 * 82.56768 * 19 18 16 42 42 H 1.09000 * 111.00843 * 206.38901 * 19 18 16 43 43 H 1.09000 * 110.49242 * 278.45503 * 20 19 18 44 44 H 1.08997 * 110.34558 * 156.05843 * 20 19 18 45 45 H 1.08002 * 121.04731 * 359.97438 * 25 24 22 46 46 H 1.08003 * 120.96078 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.96315 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2986 5 8 1.0054 1.4452 2.1413 6 7 2.0188 3.3198 1.5239 7 6 1.6931 3.9343 2.7054 8 1 1.1302 3.3986 3.4554 9 6 2.0873 5.2462 2.9379 10 7 2.7719 5.8982 2.0251 11 14 1.6429 6.0837 4.5474 12 1 2.2337 5.3257 5.6794 13 1 2.1756 7.4699 4.5477 14 1 0.1656 6.1216 4.6943 15 6 1.9954 -0.7659 -1.1377 16 6 1.6315 -2.2425 -0.9704 17 1 0.5495 -2.3670 -1.0138 18 6 2.3008 -3.0773 -2.0827 19 6 2.7194 -4.3736 -1.3401 20 6 3.1128 -3.8178 0.0538 21 7 2.1410 -2.7406 0.3156 22 6 1.7833 -2.2840 1.5321 23 8 0.9731 -1.3834 1.6290 24 6 2.3784 -2.8793 2.7513 25 6 2.0099 -2.4093 4.0144 26 6 2.5975 -3.0008 5.1244 27 6 3.5119 -4.0201 4.9127 28 7 3.8070 -4.3998 3.6815 29 7 3.2649 -3.8627 2.6496 30 1 -0.3633 -1.0252 0.0708 31 1 -0.3633 0.5740 0.8524 32 1 -0.3633 0.4513 -0.9233 33 1 3.0797 1.3445 -0.1082 34 1 1.5611 1.9275 -0.8308 35 1 2.5248 3.8008 0.8504 36 1 3.0468 6.8143 2.1872 37 1 3.0798 -0.6609 -1.1756 38 1 1.5611 -0.3871 -2.0628 39 1 1.5896 -3.3008 -2.8779 40 1 3.1748 -2.5607 -2.4795 41 1 1.8829 -5.0685 -1.2654 42 1 3.5734 -4.8444 -1.8270 43 1 4.1264 -3.4175 0.0328 44 1 3.0277 -4.5977 0.8105 45 1 1.2913 -1.6105 4.1236 46 1 2.3484 -2.6764 6.1240 47 1 3.9877 -4.5014 5.7544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281965675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:01 Heat of formation + Delta-G solvation = 22.038730 kcal Electronic energy + Delta-G solvation = -31809.356220 eV Core-core repulsion = 27607.924768 eV Total energy + Delta-G solvation = -4201.431452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -42.15344 -40.94207 -40.03829 -38.29444 -37.31708 -35.75703 -34.22363 -33.81944 -33.21023 -32.11048 -31.31206 -29.18474 -27.34162 -26.66060 -26.26232 -25.51361 -24.18961 -22.66435 -22.07190 -20.85808 -20.35618 -19.80274 -18.82871 -18.02405 -17.83029 -17.55072 -17.33911 -16.70516 -16.50518 -16.31826 -16.07930 -15.94281 -15.50152 -15.14761 -15.02391 -14.82525 -14.67234 -14.26112 -14.15534 -14.01745 -13.55745 -13.49268 -13.34687 -13.28436 -12.99732 -12.59699 -12.57510 -12.43210 -12.40230 -12.24721 -12.11885 -11.89858 -11.68661 -11.49085 -11.39348 -11.25669 -11.02593 -10.72997 -10.48839 -10.14373 -9.94013 -9.50113 -8.71381 -8.43117 -5.91010 -0.46887 -0.24742 1.38978 1.39381 1.50729 1.88712 2.03647 2.13681 2.29564 2.75049 2.88196 2.93639 3.23383 3.45407 3.50585 3.60525 3.76818 3.82236 3.88408 3.96310 3.97498 4.18824 4.27787 4.33752 4.35674 4.42153 4.53012 4.55090 4.68488 4.69997 4.75674 4.81210 4.88769 4.92315 5.02948 5.10304 5.16636 5.18699 5.23209 5.37825 5.42944 5.43582 5.68075 5.96646 6.21316 6.42563 6.66939 6.69753 7.18320 7.38423 7.56908 7.62746 8.21420 8.74773 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.003552 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.325247 B = 7881.723818 C = 9867.188785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.503 5.503 3 C 0.054 3.946 4 C 0.443 3.557 5 O -0.589 6.589 6 N -0.583 5.583 7 C -0.326 4.326 8 H 0.077 0.923 9 C -0.017 4.017 10 N -0.926 5.926 11 Si 0.992 3.008 12 H -0.272 1.272 13 H -0.271 1.271 14 H -0.273 1.273 15 C 0.041 3.959 16 C 0.141 3.859 17 H 0.066 0.934 18 C -0.116 4.116 19 C -0.123 4.123 20 C 0.099 3.901 21 N -0.598 5.598 22 C 0.558 3.442 23 O -0.474 6.474 24 C 0.020 3.980 25 C -0.086 4.086 26 C -0.106 4.106 27 C 0.058 3.942 28 N -0.273 5.273 29 N -0.224 5.224 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.005 0.995 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.392 0.608 36 H 0.276 0.724 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.091 0.909 45 H 0.144 0.856 46 H 0.192 0.808 47 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.510 -22.164 -4.899 22.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.228 5.228 3 C -0.077 4.077 4 C 0.230 3.770 5 O -0.472 6.472 6 N -0.222 5.222 7 C -0.456 4.456 8 H 0.095 0.905 9 C -0.215 4.215 10 N -0.568 5.568 11 Si 0.816 3.184 12 H -0.197 1.197 13 H -0.195 1.195 14 H -0.198 1.198 15 C -0.087 4.087 16 C 0.038 3.962 17 H 0.084 0.916 18 C -0.154 4.154 19 C -0.161 4.161 20 C -0.023 4.023 21 N -0.334 5.334 22 C 0.342 3.658 23 O -0.343 6.343 24 C -0.126 4.126 25 C -0.115 4.115 26 C -0.135 4.135 27 C -0.105 4.105 28 N -0.116 5.116 29 N -0.070 5.070 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.023 0.977 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.225 0.775 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.124 0.876 43 H 0.076 0.924 44 H 0.109 0.891 45 H 0.162 0.838 46 H 0.209 0.791 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.680 -23.067 -4.762 23.705 hybrid contribution -0.982 2.609 0.797 2.899 sum 1.698 -20.458 -3.966 20.908 Atomic orbital electron populations 1.22007 0.86930 1.01101 0.97698 1.61902 1.08788 1.10346 1.41748 1.21737 1.01027 0.90862 0.94083 1.20743 0.83695 0.82110 0.90479 1.90509 1.43690 1.64769 1.48271 1.41958 1.50876 1.11723 1.17680 1.19585 1.34017 0.96374 0.95618 0.90501 1.26011 0.96524 0.96617 1.02387 1.69681 1.38658 1.12590 1.35855 0.85010 0.78561 0.77300 0.77570 1.19685 1.19522 1.19785 1.22766 1.00403 0.93758 0.91780 1.21781 0.98509 0.92426 0.83523 0.91611 1.22681 1.01692 0.95179 0.95854 1.22839 1.02876 0.96816 0.93532 1.22699 0.91466 0.89598 0.98561 1.48160 1.43698 1.37424 1.04082 1.17475 0.83590 0.82622 0.82159 1.91091 1.32529 1.25819 1.84895 1.23057 0.97313 0.96354 0.95879 1.22570 0.98197 0.98339 0.92392 1.22882 0.94556 0.94600 1.01443 1.25078 0.93956 0.93883 0.97561 1.73001 1.18759 1.22134 0.97674 1.73361 1.04651 1.05544 1.23490 0.91595 0.93597 0.97710 0.88851 0.92618 0.77508 0.91506 0.90642 0.92740 0.87973 0.89337 0.90372 0.87645 0.92385 0.89077 0.83784 0.79087 0.76421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.66 7.00 127.69 0.89 3.55 16 2 N -0.50 -18.29 1.86 -927.01 -1.72 -20.02 16 3 C 0.05 2.14 5.45 85.56 0.47 2.60 16 4 C 0.44 22.70 7.47 87.66 0.66 23.36 16 5 O -0.59 -34.12 13.17 1.49 0.02 -34.10 16 6 N -0.58 -31.81 5.29 -306.98 -1.62 -33.43 16 7 C -0.33 -19.30 9.68 84.04 0.81 -18.49 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 10 N -0.93 -52.03 13.05 21.66 0.28 -51.75 16 11 Si 0.99 44.39 29.55 68.60 2.03 46.42 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 15 C 0.04 1.09 4.54 86.30 0.39 1.48 16 16 C 0.14 3.22 2.89 45.34 0.13 3.35 16 17 H 0.07 1.61 6.81 -2.39 -0.02 1.59 16 18 C -0.12 -1.58 6.47 31.78 0.21 -1.37 16 19 C -0.12 -1.62 7.10 32.06 0.23 -1.40 16 20 C 0.10 2.09 5.97 86.94 0.52 2.61 16 21 N -0.60 -16.24 3.06 -790.63 -2.42 -18.66 16 22 C 0.56 19.13 7.41 86.88 0.64 19.78 16 23 O -0.47 -19.50 9.72 0.76 0.01 -19.49 16 24 C 0.02 0.63 6.80 41.99 0.29 0.92 16 25 C -0.09 -2.46 9.73 22.77 0.22 -2.24 16 26 C -0.11 -2.03 10.20 22.49 0.23 -1.80 16 27 C 0.06 1.02 11.31 84.72 0.96 1.98 16 28 N -0.27 -6.78 11.51 -57.15 -0.66 -7.44 16 29 N -0.22 -6.33 7.82 -48.49 -0.38 -6.71 16 30 H 0.07 2.38 5.47 -2.39 -0.01 2.37 16 31 H 0.05 2.16 5.82 -2.39 -0.01 2.15 16 32 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.09 3.38 7.93 -2.39 -0.02 3.36 16 34 H 0.06 2.00 8.12 -2.39 -0.02 1.99 16 35 H 0.39 20.53 7.90 -92.70 -0.73 19.79 16 36 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 37 H 0.08 1.92 7.85 -2.38 -0.02 1.90 16 38 H 0.05 1.24 8.12 -2.39 -0.02 1.22 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.09 1.07 7.79 -2.38 -0.02 1.05 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.09 2.10 5.89 -2.39 -0.01 2.09 16 45 H 0.14 4.72 7.72 -2.91 -0.02 4.70 16 46 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 47 H 0.22 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -78.66 375.59 2.92 -75.74 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: 0.28 Total: 35.56 kcal Atomic # 6 Polarization: 26.76 SS G_CDS: 7.11 Total: 33.87 kcal Atomic # 7 Polarization: -131.48 SS G_CDS: -6.52 Total: -138.00 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: 0.03 Total: -53.59 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -78.66 2.92 -75.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281965675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.783 kcal (2) G-P(sol) polarization free energy of solvation -78.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds