Wall clock time and date at job start Wed Apr 1 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 111.00115 * 2 1 4 4 C 1.50702 * 109.46705 * 66.05017 * 3 2 1 5 5 O 1.21298 * 120.00074 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99786 * 179.97438 * 4 3 2 7 7 C 1.37101 * 119.99879 * 179.97438 * 6 4 3 8 8 H 1.08002 * 119.99914 * 0.02562 * 7 6 4 9 9 C 1.38956 * 119.99995 * 179.97438 * 7 6 4 10 10 N 1.31410 * 119.99671 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99985 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47163 * 89.99582 * 11 9 7 13 13 H 1.48489 * 109.47097 * 209.99808 * 11 9 7 14 14 H 1.48507 * 109.46850 * 329.99843 * 11 9 7 15 15 C 1.46909 * 110.99893 * 236.05145 * 2 1 3 16 16 C 1.52998 * 109.46815 * 293.95250 * 15 2 1 17 17 H 1.09003 * 110.00022 * 64.64200 * 16 15 2 18 18 C 1.54323 * 109.87921 * 185.73788 * 16 15 2 19 19 C 1.55157 * 102.94145 * 141.61425 * 18 16 15 20 20 C 1.55128 * 101.48466 * 324.32695 * 19 18 16 21 21 N 1.47021 * 109.88507 * 303.54726 * 16 15 2 22 22 C 1.34776 * 125.65189 * 61.60258 * 21 16 15 23 23 O 1.21480 * 119.99693 * 0.02562 * 22 21 16 24 24 C 1.48451 * 120.00018 * 180.02562 * 22 21 16 25 25 C 1.39539 * 120.54608 * 180.02562 * 24 22 21 26 26 C 1.38768 * 118.26218 * 179.70005 * 25 24 22 27 27 N 1.32198 * 119.14750 * 0.27856 * 26 25 24 28 28 C 1.31889 * 121.03445 * 359.97438 * 27 26 25 29 29 N 1.31580 * 121.92176 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.46828 * 183.94826 * 1 2 3 31 31 H 1.09000 * 109.46403 * 303.94803 * 1 2 3 32 32 H 1.09001 * 109.47338 * 63.94938 * 1 2 3 33 33 H 1.08997 * 109.46888 * 186.04934 * 3 2 1 34 34 H 1.08991 * 109.47215 * 306.05083 * 3 2 1 35 35 H 0.97002 * 120.00106 * 359.97438 * 6 4 3 36 36 H 0.97000 * 119.99416 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.46956 * 173.95230 * 15 2 1 38 38 H 1.09002 * 109.46850 * 53.95254 * 15 2 1 39 39 H 1.09005 * 110.72090 * 259.96887 * 18 16 15 40 40 H 1.08994 * 110.72541 * 23.07026 * 18 16 15 41 41 H 1.08993 * 111.00977 * 82.57107 * 19 18 16 42 42 H 1.09007 * 111.00303 * 206.38642 * 19 18 16 43 43 H 1.08996 * 110.50180 * 278.45835 * 20 19 18 44 44 H 1.09004 * 110.34163 * 156.06173 * 20 19 18 45 45 H 1.08002 * 120.87229 * 359.97438 * 25 24 22 46 46 H 1.07995 * 120.42403 * 180.29725 * 26 25 24 47 47 H 1.08006 * 119.03578 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0055 1.4451 2.1413 6 7 2.0190 3.3197 1.5239 7 6 1.6924 3.9345 2.7050 8 1 1.1294 3.3988 3.4550 9 6 2.0867 5.2465 2.9375 10 7 1.7732 5.8359 4.0694 11 14 3.0611 6.1728 1.6406 12 1 2.1253 6.8778 0.7281 13 1 3.9482 7.1632 2.3016 14 1 3.8841 5.2136 0.8609 15 6 1.9954 -0.7659 -1.1377 16 6 1.6314 -2.2425 -0.9705 17 1 0.5494 -2.3670 -1.0138 18 6 2.3007 -3.0772 -2.0828 19 6 2.7192 -4.3736 -1.3402 20 6 3.1128 -3.8179 0.0536 21 7 2.1409 -2.7407 0.3155 22 6 1.7833 -2.2841 1.5321 23 8 0.9728 -1.3844 1.6290 24 6 2.3797 -2.8807 2.7536 25 6 2.0172 -2.4172 4.0188 26 6 2.5994 -3.0131 5.1286 27 7 3.4745 -3.9879 4.9512 28 6 3.7987 -4.3987 3.7405 29 7 3.2716 -3.8638 2.6600 30 1 -0.3633 -1.0253 0.0708 31 1 -0.3632 0.5739 0.8525 32 1 -0.3634 0.4513 -0.9233 33 1 3.0797 1.3444 -0.1083 34 1 1.5611 1.9274 -0.8308 35 1 2.5249 3.8007 0.8504 36 1 2.0488 6.7516 4.2319 37 1 3.0797 -0.6610 -1.1758 38 1 1.5610 -0.3871 -2.0629 39 1 1.5895 -3.3008 -2.8780 40 1 3.1728 -2.5594 -2.4817 41 1 1.8828 -5.0685 -1.2655 42 1 3.5733 -4.8444 -1.8272 43 1 4.1263 -3.4176 0.0326 44 1 3.0276 -4.5978 0.8103 45 1 1.2990 -1.6185 4.1317 46 1 2.3406 -2.6850 6.1244 47 1 4.5171 -5.1979 3.6330 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281965859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:15 Heat of formation + Delta-G solvation = 44.489530 kcal Electronic energy + Delta-G solvation = -31848.629842 eV Core-core repulsion = 27648.171929 eV Total energy + Delta-G solvation = -4200.457913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.20122 -39.91703 -38.40076 -37.23161 -35.99396 -33.96149 -33.71635 -32.03608 -31.55382 -31.42310 -30.35048 -27.77361 -26.10482 -25.76297 -24.41260 -24.37409 -23.02385 -21.40374 -21.35706 -19.43441 -19.17689 -18.16198 -17.79029 -17.32425 -16.63388 -15.98080 -15.76652 -15.40145 -15.17525 -14.97101 -14.83158 -14.51600 -14.50156 -14.01889 -13.74484 -13.74289 -13.52740 -13.28963 -13.11577 -12.69041 -12.40990 -12.36345 -12.21113 -11.89456 -11.48880 -11.41381 -11.29889 -11.22030 -11.08947 -10.88321 -10.82594 -10.78040 -10.65991 -10.52725 -9.89441 -9.72803 -9.66888 -9.40933 -9.08549 -8.57476 -8.19583 -8.04671 -7.48533 -6.22421 -3.72315 0.58039 0.88113 2.93392 3.08190 3.11829 3.12404 3.19476 3.88166 3.91047 3.91302 4.05303 4.06461 4.17766 4.37560 4.53910 4.67774 4.72834 4.89529 4.97227 5.05349 5.08611 5.22404 5.30641 5.32635 5.48670 5.54944 5.56660 5.58361 5.62576 5.70285 5.74221 5.83297 5.92186 5.98413 6.04871 6.07783 6.10900 6.23081 6.24648 6.53020 6.79359 6.88899 7.42431 7.63760 7.70369 7.71812 7.88371 8.25811 8.55818 8.72592 9.06966 9.54049 9.99774 10.91326 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.003611 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.164215 B = 7751.620240 C = 9554.667811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.490 5.490 3 C 0.040 3.960 4 C 0.456 3.544 5 O -0.539 6.539 6 N -0.601 5.601 7 C -0.298 4.298 8 H 0.119 0.881 9 C 0.039 3.961 10 N -0.887 5.887 11 Si 0.878 3.122 12 H -0.272 1.272 13 H -0.278 1.278 14 H -0.271 1.271 15 C 0.041 3.959 16 C 0.146 3.854 17 H 0.074 0.926 18 C -0.127 4.127 19 C -0.136 4.136 20 C 0.105 3.895 21 N -0.598 5.598 22 C 0.563 3.437 23 O -0.427 6.427 24 C 0.145 3.855 25 C -0.162 4.162 26 C 0.147 3.853 27 N -0.514 5.514 28 C 0.280 3.720 29 N -0.499 5.499 30 H 0.062 0.938 31 H 0.092 0.908 32 H -0.007 1.007 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.367 0.633 36 H 0.271 0.729 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.101 0.899 45 H 0.166 0.834 46 H 0.175 0.825 47 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.045 -21.791 -11.380 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.214 5.214 3 C -0.092 4.092 4 C 0.241 3.759 5 O -0.418 6.418 6 N -0.242 5.242 7 C -0.427 4.427 8 H 0.136 0.864 9 C -0.163 4.163 10 N -0.528 5.528 11 Si 0.705 3.295 12 H -0.198 1.198 13 H -0.203 1.203 14 H -0.196 1.196 15 C -0.088 4.088 16 C 0.042 3.958 17 H 0.092 0.908 18 C -0.166 4.166 19 C -0.174 4.174 20 C -0.018 4.018 21 N -0.335 5.335 22 C 0.346 3.654 23 O -0.293 6.293 24 C -0.003 4.003 25 C -0.184 4.184 26 C -0.019 4.019 27 N -0.229 5.229 28 C -0.008 4.008 29 N -0.216 5.216 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.011 0.989 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.200 0.800 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.119 0.881 45 H 0.183 0.817 46 H 0.192 0.808 47 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.891 -22.389 -10.187 24.903 hybrid contribution 0.299 2.085 -1.636 2.667 sum 4.190 -20.304 -11.823 23.866 Atomic orbital electron populations 1.22345 0.86170 1.01809 0.99379 1.61978 1.09294 1.10984 1.39098 1.21923 1.00180 0.90334 0.96764 1.19678 0.84865 0.82236 0.89088 1.90569 1.41414 1.63587 1.46272 1.42247 1.51694 1.12221 1.17989 1.19406 1.33180 0.96095 0.93970 0.86386 1.25001 0.98102 0.96531 0.96681 1.69623 1.46399 1.13500 1.23287 0.86694 0.80514 0.80490 0.81801 1.19801 1.20344 1.19640 1.22662 1.00226 0.93383 0.92573 1.21585 0.98476 0.92771 0.82946 0.90821 1.22666 1.01081 0.95999 0.96838 1.22869 1.01721 0.96918 0.95914 1.22569 0.92136 0.90575 0.96508 1.48012 1.43949 1.37358 1.04228 1.17346 0.83966 0.82974 0.81093 1.91106 1.30352 1.23790 1.84050 1.21902 0.92038 0.91468 0.94868 1.23129 1.01332 1.01162 0.92795 1.23355 0.89326 0.89380 0.99878 1.68319 1.14065 1.13385 1.27130 1.24941 0.95891 0.97028 0.82931 1.68584 1.09224 1.09743 1.34071 0.91943 0.88906 0.98902 0.90219 0.94104 0.80028 0.91827 0.91098 0.94657 0.90286 0.90474 0.90908 0.90200 0.92125 0.88148 0.81660 0.80819 0.78721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.88 7.00 60.06 0.42 1.30 16 2 N -0.49 -8.33 1.86 -244.36 -0.45 -8.79 16 3 C 0.04 0.72 5.45 -4.97 -0.03 0.70 16 4 C 0.46 10.78 7.47 -10.99 -0.08 10.70 16 5 O -0.54 -14.56 13.17 0.86 0.01 -14.55 16 6 N -0.60 -14.86 5.09 -10.96 -0.06 -14.91 16 7 C -0.30 -8.61 10.16 -14.93 -0.15 -8.77 16 8 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 9 C 0.04 1.09 5.50 -17.47 -0.10 0.99 16 10 N -0.89 -26.49 13.96 55.50 0.77 -25.72 16 11 Si 0.88 20.05 27.74 -169.99 -4.71 15.34 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.27 -5.70 6.52 56.52 0.37 -5.33 16 15 C 0.04 0.52 4.54 -3.82 -0.02 0.51 16 16 C 0.15 1.63 2.89 -66.95 -0.19 1.44 16 17 H 0.07 0.88 6.81 -51.93 -0.35 0.52 16 18 C -0.13 -0.96 6.47 -24.90 -0.16 -1.12 16 19 C -0.14 -0.95 7.10 -24.46 -0.17 -1.13 16 20 C 0.11 1.02 5.98 -2.41 -0.01 1.00 16 21 N -0.60 -7.56 3.06 -163.75 -0.50 -8.06 16 22 C 0.56 8.82 7.42 -12.05 -0.09 8.73 16 23 O -0.43 -8.04 9.76 0.71 0.01 -8.04 16 24 C 0.15 2.08 6.75 -82.64 -0.56 1.52 16 25 C -0.16 -2.25 9.72 -38.90 -0.38 -2.63 16 26 C 0.15 1.73 11.31 -17.20 -0.19 1.54 16 27 N -0.51 -6.14 10.42 -14.59 -0.15 -6.29 16 28 C 0.28 2.99 12.27 -92.26 -1.13 1.86 16 29 N -0.50 -6.04 6.79 -11.14 -0.08 -6.11 16 30 H 0.06 1.04 5.47 -51.93 -0.28 0.76 16 31 H 0.09 2.01 5.82 -51.93 -0.30 1.70 16 32 H -0.01 -0.12 8.14 -51.93 -0.42 -0.54 16 33 H 0.08 1.33 7.93 -51.93 -0.41 0.91 16 34 H 0.04 0.68 8.12 -51.93 -0.42 0.25 16 35 H 0.37 8.12 5.76 -40.82 -0.24 7.88 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 38 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.54 7.79 -51.93 -0.40 0.14 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.99 5.91 -51.93 -0.31 0.68 16 45 H 0.17 2.51 7.74 -52.49 -0.41 2.10 16 46 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 47 H 0.20 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -35.08 372.48 -8.87 -43.95 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.47 Total: 10.94 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: -2.85 Total: 16.65 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -0.47 Total: -69.89 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.02 Total: -22.59 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.71 Total: 15.34 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.08 -8.87 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281965859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.436 kcal (2) G-P(sol) polarization free energy of solvation -35.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds