Wall clock time and date at job start Wed Apr 1 2020 06:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 111.00115 * 2 1 4 4 C 1.50702 * 109.46705 * 66.05017 * 3 2 1 5 5 O 1.21298 * 120.00074 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99786 * 179.97438 * 4 3 2 7 7 C 1.37101 * 119.99879 * 179.97438 * 6 4 3 8 8 H 1.08002 * 119.99914 * 0.02562 * 7 6 4 9 9 C 1.38956 * 119.99995 * 179.97438 * 7 6 4 10 10 N 1.31410 * 119.99671 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99985 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47163 * 89.99582 * 11 9 7 13 13 H 1.48489 * 109.47097 * 209.99808 * 11 9 7 14 14 H 1.48507 * 109.46850 * 329.99843 * 11 9 7 15 15 C 1.46909 * 110.99893 * 236.05145 * 2 1 3 16 16 C 1.52998 * 109.46815 * 293.95250 * 15 2 1 17 17 H 1.09003 * 110.00022 * 64.64200 * 16 15 2 18 18 C 1.54323 * 109.87921 * 185.73788 * 16 15 2 19 19 C 1.55157 * 102.94145 * 141.61425 * 18 16 15 20 20 C 1.55128 * 101.48466 * 324.32695 * 19 18 16 21 21 N 1.47021 * 109.88507 * 303.54726 * 16 15 2 22 22 C 1.34776 * 125.65189 * 61.60258 * 21 16 15 23 23 O 1.21480 * 119.99693 * 0.02562 * 22 21 16 24 24 C 1.48451 * 120.00018 * 180.02562 * 22 21 16 25 25 C 1.39539 * 120.54608 * 180.02562 * 24 22 21 26 26 C 1.38768 * 118.26218 * 179.70005 * 25 24 22 27 27 N 1.32198 * 119.14750 * 0.27856 * 26 25 24 28 28 C 1.31889 * 121.03445 * 359.97438 * 27 26 25 29 29 N 1.31580 * 121.92176 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.46828 * 183.94826 * 1 2 3 31 31 H 1.09000 * 109.46403 * 303.94803 * 1 2 3 32 32 H 1.09001 * 109.47338 * 63.94938 * 1 2 3 33 33 H 1.08997 * 109.46888 * 186.04934 * 3 2 1 34 34 H 1.08991 * 109.47215 * 306.05083 * 3 2 1 35 35 H 0.97002 * 120.00106 * 359.97438 * 6 4 3 36 36 H 0.97000 * 119.99416 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.46956 * 173.95230 * 15 2 1 38 38 H 1.09002 * 109.46850 * 53.95254 * 15 2 1 39 39 H 1.09005 * 110.72090 * 259.96887 * 18 16 15 40 40 H 1.08994 * 110.72541 * 23.07026 * 18 16 15 41 41 H 1.08993 * 111.00977 * 82.57107 * 19 18 16 42 42 H 1.09007 * 111.00303 * 206.38642 * 19 18 16 43 43 H 1.08996 * 110.50180 * 278.45835 * 20 19 18 44 44 H 1.09004 * 110.34163 * 156.06173 * 20 19 18 45 45 H 1.08002 * 120.87229 * 359.97438 * 25 24 22 46 46 H 1.07995 * 120.42403 * 180.29725 * 26 25 24 47 47 H 1.08006 * 119.03578 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0055 1.4451 2.1413 6 7 2.0190 3.3197 1.5239 7 6 1.6924 3.9345 2.7050 8 1 1.1294 3.3988 3.4550 9 6 2.0867 5.2465 2.9375 10 7 1.7732 5.8359 4.0694 11 14 3.0611 6.1728 1.6406 12 1 2.1253 6.8778 0.7281 13 1 3.9482 7.1632 2.3016 14 1 3.8841 5.2136 0.8609 15 6 1.9954 -0.7659 -1.1377 16 6 1.6314 -2.2425 -0.9705 17 1 0.5494 -2.3670 -1.0138 18 6 2.3007 -3.0772 -2.0828 19 6 2.7192 -4.3736 -1.3402 20 6 3.1128 -3.8179 0.0536 21 7 2.1409 -2.7407 0.3155 22 6 1.7833 -2.2841 1.5321 23 8 0.9728 -1.3844 1.6290 24 6 2.3797 -2.8807 2.7536 25 6 2.0172 -2.4172 4.0188 26 6 2.5994 -3.0131 5.1286 27 7 3.4745 -3.9879 4.9512 28 6 3.7987 -4.3987 3.7405 29 7 3.2716 -3.8638 2.6600 30 1 -0.3633 -1.0253 0.0708 31 1 -0.3632 0.5739 0.8525 32 1 -0.3634 0.4513 -0.9233 33 1 3.0797 1.3444 -0.1083 34 1 1.5611 1.9274 -0.8308 35 1 2.5249 3.8007 0.8504 36 1 2.0488 6.7516 4.2319 37 1 3.0797 -0.6610 -1.1758 38 1 1.5610 -0.3871 -2.0629 39 1 1.5895 -3.3008 -2.8780 40 1 3.1728 -2.5594 -2.4817 41 1 1.8828 -5.0685 -1.2655 42 1 3.5733 -4.8444 -1.8272 43 1 4.1263 -3.4176 0.0326 44 1 3.0276 -4.5978 0.8103 45 1 1.2990 -1.6185 4.1317 46 1 2.3406 -2.6850 6.1244 47 1 4.5171 -5.1979 3.6330 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281965859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:12 Heat of formation + Delta-G solvation = 20.257537 kcal Electronic energy + Delta-G solvation = -31849.680620 eV Core-core repulsion = 27648.171929 eV Total energy + Delta-G solvation = -4201.508691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.18641 -40.96182 -40.16214 -38.29977 -37.35749 -35.80621 -34.91498 -33.69915 -33.04240 -32.28207 -31.35579 -29.29816 -27.36089 -26.76904 -26.14764 -25.32804 -24.11383 -22.62262 -22.07436 -21.15383 -20.40158 -20.11702 -18.80588 -18.27589 -17.85220 -17.34935 -16.97525 -16.69862 -16.45877 -16.34889 -16.09294 -15.91882 -15.64791 -15.23731 -15.10466 -14.90218 -14.70965 -14.63047 -14.24700 -14.09531 -14.00294 -13.43946 -13.36823 -13.29516 -13.04620 -12.59515 -12.51132 -12.37836 -12.25287 -12.22037 -12.00541 -11.89373 -11.80105 -11.69116 -11.45525 -11.41268 -10.80896 -10.75995 -10.23648 -10.17176 -10.11155 -9.49256 -8.71711 -8.39265 -5.98065 -0.47645 -0.08117 1.27884 1.33592 1.41903 1.92773 2.04680 2.07419 2.22807 2.72264 2.88528 2.94758 3.17149 3.20368 3.33695 3.52468 3.78254 3.84921 3.90541 3.96035 4.08424 4.18508 4.33212 4.34802 4.41668 4.44610 4.53459 4.57553 4.64704 4.69847 4.73110 4.74788 4.89854 5.04282 5.13080 5.18498 5.21824 5.33107 5.39500 5.45402 5.56637 5.67754 5.79978 5.95592 6.16668 6.41101 6.64878 6.69457 6.92075 6.94392 7.45227 7.45627 8.06871 8.78978 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.003611 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.164215 B = 7751.620240 C = 9554.667811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.508 5.508 3 C 0.051 3.949 4 C 0.451 3.549 5 O -0.580 6.580 6 N -0.602 5.602 7 C -0.320 4.320 8 H 0.054 0.946 9 C -0.017 4.017 10 N -0.939 5.939 11 Si 0.964 3.036 12 H -0.258 1.258 13 H -0.274 1.274 14 H -0.236 1.236 15 C 0.042 3.958 16 C 0.139 3.861 17 H 0.063 0.937 18 C -0.116 4.116 19 C -0.124 4.124 20 C 0.101 3.899 21 N -0.596 5.596 22 C 0.552 3.448 23 O -0.473 6.473 24 C 0.131 3.869 25 C -0.186 4.186 26 C 0.155 3.845 27 N -0.522 5.522 28 C 0.284 3.716 29 N -0.493 5.493 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.009 0.991 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.385 0.615 36 H 0.277 0.723 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.061 0.939 44 H 0.097 0.903 45 H 0.139 0.861 46 H 0.198 0.802 47 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 -23.297 -15.384 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.233 5.233 3 C -0.080 4.080 4 C 0.238 3.762 5 O -0.461 6.461 6 N -0.245 5.245 7 C -0.449 4.449 8 H 0.072 0.928 9 C -0.215 4.215 10 N -0.580 5.580 11 Si 0.784 3.216 12 H -0.183 1.183 13 H -0.200 1.200 14 H -0.159 1.159 15 C -0.086 4.086 16 C 0.036 3.964 17 H 0.081 0.919 18 C -0.154 4.154 19 C -0.162 4.162 20 C -0.021 4.021 21 N -0.331 5.331 22 C 0.336 3.664 23 O -0.343 6.343 24 C -0.017 4.017 25 C -0.209 4.209 26 C -0.011 4.011 27 N -0.236 5.236 28 C -0.003 4.003 29 N -0.210 5.210 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.027 0.973 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.220 0.780 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.124 0.876 43 H 0.079 0.921 44 H 0.115 0.885 45 H 0.157 0.843 46 H 0.215 0.785 47 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 6.839 -23.957 -14.244 28.698 hybrid contribution -0.663 2.387 -0.278 2.493 sum 6.177 -21.570 -14.522 26.726 Atomic orbital electron populations 1.22003 0.87015 1.01084 0.97752 1.61867 1.08751 1.10556 1.42082 1.21817 1.01732 0.90927 0.93531 1.20890 0.83008 0.81659 0.90634 1.90575 1.42688 1.64501 1.48354 1.42084 1.52539 1.12818 1.17061 1.18970 1.34211 0.96876 0.94849 0.92826 1.26051 0.98895 0.96946 0.99599 1.69809 1.47786 1.14275 1.26138 0.85379 0.78906 0.78969 0.78332 1.18250 1.19954 1.15945 1.22768 1.00594 0.93559 0.91667 1.21798 0.98416 0.92653 0.83573 0.91941 1.22669 1.01678 0.95303 0.95755 1.22853 1.02805 0.96708 0.93874 1.22730 0.91407 0.89643 0.98331 1.48152 1.43695 1.37457 1.03840 1.17668 0.83690 0.82717 0.82329 1.91093 1.32402 1.25900 1.84891 1.21890 0.92903 0.92369 0.94517 1.23028 1.02209 1.01659 0.93999 1.23695 0.88485 0.88743 1.00216 1.68439 1.14057 1.13316 1.27789 1.25829 0.95381 0.96932 0.82168 1.68672 1.08739 1.09071 1.34533 0.91777 0.93938 0.97257 0.87774 0.91457 0.77993 0.91327 0.90196 0.92509 0.88286 0.89172 0.90651 0.87594 0.92086 0.88493 0.84321 0.78473 0.74603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.49 7.00 127.69 0.89 3.39 16 2 N -0.51 -17.07 1.86 -927.02 -1.73 -18.80 16 3 C 0.05 1.80 5.45 85.56 0.47 2.26 16 4 C 0.45 21.96 7.47 87.66 0.66 22.62 16 5 O -0.58 -33.74 13.17 1.39 0.02 -33.72 16 6 N -0.60 -30.22 5.09 -306.98 -1.56 -31.79 16 7 C -0.32 -19.52 10.16 84.04 0.85 -18.67 16 8 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 9 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 10 N -0.94 -58.37 13.96 21.66 0.30 -58.07 16 11 Si 0.96 40.74 27.74 68.60 1.90 42.65 16 12 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 13 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 14 H -0.24 -8.58 6.52 99.48 0.65 -7.93 16 15 C 0.04 0.98 4.54 86.30 0.39 1.37 16 16 C 0.14 2.82 2.89 45.34 0.13 2.95 16 17 H 0.06 1.41 6.81 -2.39 -0.02 1.40 16 18 C -0.12 -1.27 6.47 31.78 0.21 -1.06 16 19 C -0.12 -1.27 7.10 32.06 0.23 -1.04 16 20 C 0.10 1.72 5.98 86.93 0.52 2.24 16 21 N -0.60 -14.55 3.06 -790.30 -2.42 -16.97 16 22 C 0.55 17.99 7.42 86.97 0.65 18.63 16 23 O -0.47 -19.12 9.76 0.82 0.01 -19.11 16 24 C 0.13 3.90 6.75 41.99 0.28 4.18 16 25 C -0.19 -5.63 9.72 22.71 0.22 -5.41 16 26 C 0.16 3.76 11.31 84.76 0.96 4.72 16 27 N -0.52 -11.95 10.42 -200.09 -2.09 -14.03 16 28 C 0.28 5.58 12.27 180.92 2.22 7.80 16 29 N -0.49 -11.55 6.79 -189.15 -1.29 -12.84 16 30 H 0.06 2.24 5.47 -2.38 -0.01 2.23 16 31 H 0.04 1.96 5.82 -2.39 -0.01 1.95 16 32 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.10 3.16 7.93 -2.39 -0.02 3.14 16 34 H 0.07 2.02 8.12 -2.39 -0.02 2.01 16 35 H 0.39 16.32 5.76 -92.71 -0.53 15.79 16 36 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 37 H 0.08 1.71 7.85 -2.39 -0.02 1.69 16 38 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 39 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.09 0.82 7.79 -2.39 -0.02 0.80 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.10 1.73 5.91 -2.38 -0.01 1.72 16 45 H 0.14 4.88 7.74 -2.91 -0.02 4.86 16 46 H 0.20 3.59 8.06 -2.91 -0.02 3.57 16 47 H 0.24 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -85.32 372.48 2.71 -82.61 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: 0.42 Total: 36.60 kcal Atomic # 6 Polarization: 34.32 SS G_CDS: 9.14 Total: 43.46 kcal Atomic # 7 Polarization: -143.71 SS G_CDS: -8.78 Total: -152.49 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: 0.03 Total: -52.83 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.90 Total: 42.65 kcal Total: -85.32 2.71 -82.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281965859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.868 kcal (2) G-P(sol) polarization free energy of solvation -85.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds