Wall clock time and date at job start Wed Apr 1 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00364 * 2 1 4 4 C 1.50701 * 109.47409 * 66.04026 * 3 2 1 5 5 O 1.21300 * 119.99524 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00448 * 180.02562 * 4 3 2 7 7 C 1.37099 * 120.00349 * 180.02562 * 6 4 3 8 8 H 1.08000 * 119.99613 * 359.97438 * 7 6 4 9 9 C 1.38941 * 119.99868 * 179.97438 * 7 6 4 10 10 N 1.31417 * 119.99889 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00667 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47462 * 89.99655 * 11 9 7 13 13 H 1.48496 * 109.47497 * 210.00331 * 11 9 7 14 14 H 1.48505 * 109.46684 * 330.00038 * 11 9 7 15 15 C 1.46898 * 111.00563 * 236.04017 * 2 1 3 16 16 C 1.53047 * 109.45841 * 298.95913 * 15 2 1 17 17 C 1.53201 * 109.30830 * 181.36626 * 16 15 2 18 18 N 1.46924 * 108.77972 * 305.36354 * 17 16 15 19 19 C 1.34771 * 120.63227 * 233.58817 * 18 17 16 20 20 O 1.21515 * 119.99834 * 7.62082 * 19 18 17 21 21 C 1.48145 * 120.00148 * 187.61596 * 19 18 17 22 22 C 1.39438 * 120.10124 * 189.28106 * 21 19 18 23 23 N 1.32076 * 119.87892 * 180.02562 * 22 21 19 24 24 C 1.32141 * 120.06691 * 359.73356 * 23 22 21 25 25 C 1.38727 * 120.19637 * 0.52308 * 24 23 22 26 26 N 1.31796 * 120.12375 * 359.47894 * 25 24 23 27 27 C 1.46924 * 118.73513 * 53.85796 * 18 17 16 28 28 C 1.53045 * 109.44669 * 59.01689 * 15 2 1 29 29 H 1.09001 * 109.47266 * 183.95112 * 1 2 3 30 30 H 1.08995 * 109.47814 * 303.95848 * 1 2 3 31 31 H 1.08999 * 109.46841 * 63.95938 * 1 2 3 32 32 H 1.09002 * 109.47669 * 186.04492 * 3 2 1 33 33 H 1.09007 * 109.46745 * 306.04073 * 3 2 1 34 34 H 0.97004 * 119.99866 * 359.97438 * 6 4 3 35 35 H 0.97001 * 120.00094 * 179.97438 * 10 9 7 36 36 H 1.08996 * 109.46775 * 178.98241 * 15 2 1 37 37 H 1.08997 * 109.49842 * 61.42149 * 16 15 2 38 38 H 1.08989 * 109.52254 * 301.33315 * 16 15 2 39 39 H 1.08997 * 109.57954 * 185.57422 * 17 16 15 40 40 H 1.08999 * 109.69838 * 65.22315 * 17 16 15 41 41 H 1.08007 * 120.06312 * 0.04641 * 22 21 19 42 42 H 1.08002 * 119.89969 * 180.27045 * 24 23 22 43 43 H 1.08003 * 119.93652 * 179.75317 * 25 24 23 44 44 H 1.09000 * 109.58901 * 65.93342 * 27 18 17 45 45 H 1.09004 * 109.58739 * 186.35365 * 27 18 17 46 46 H 1.09008 * 109.49605 * 298.57306 * 28 15 2 47 47 H 1.08998 * 109.49755 * 58.66804 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0052 1.4453 2.1411 6 7 2.0180 3.3202 1.5232 7 6 1.6922 3.9348 2.7046 8 1 1.1298 3.3990 3.4549 9 6 2.0856 5.2471 2.9366 10 7 1.7729 5.8364 4.0688 11 14 3.0590 6.1737 1.6392 12 1 2.1226 6.8778 0.7267 13 1 3.9458 7.1649 2.2996 14 1 3.8825 5.2148 0.8596 15 6 1.9955 -0.7661 -1.1374 16 6 1.5260 -2.2191 -1.0346 17 6 2.1049 -3.0224 -2.2036 18 7 1.7389 -2.3576 -3.4617 19 6 1.1179 -3.0404 -4.4438 20 8 0.7316 -4.1751 -4.2443 21 6 0.9062 -2.4075 -5.7664 22 6 0.0995 -3.0299 -6.7184 23 7 -0.0858 -2.4620 -7.8963 24 6 0.4879 -1.3036 -8.1705 25 6 1.2953 -0.6844 -7.2275 26 7 1.4855 -1.2443 -6.0496 27 6 2.0680 -0.9358 -3.6310 28 6 1.4846 -0.1543 -2.4440 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3634 0.5740 0.8523 31 1 -0.3633 0.4512 -0.9233 32 1 3.0798 1.3444 -0.1082 33 1 1.5612 1.9273 -0.8310 34 1 2.5235 3.8014 0.8495 35 1 2.0479 6.7524 4.2309 36 1 3.0849 -0.7346 -1.1234 37 1 0.4373 -2.2533 -1.0737 38 1 1.8700 -2.6473 -0.0932 39 1 1.6951 -4.0323 -2.1913 40 1 3.1905 -3.0675 -2.1165 41 1 -0.3732 -3.9745 -6.4928 42 1 0.3310 -0.8396 -9.1330 43 1 1.7653 0.2604 -7.4574 44 1 3.1506 -0.8118 -3.6569 45 1 1.6339 -0.5684 -4.5609 46 1 0.3962 -0.2080 -2.4696 47 1 1.7995 0.8873 -2.5055 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283283660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:50 Heat of formation + Delta-G solvation = 23.992946 kcal Electronic energy + Delta-G solvation = -30452.531995 eV Core-core repulsion = 26251.185284 eV Total energy + Delta-G solvation = -4201.346711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.95767 -40.27882 -39.05500 -37.88325 -35.94879 -34.99896 -33.92148 -32.53955 -31.69785 -31.41243 -31.09131 -28.11640 -26.67489 -25.61008 -25.23680 -24.40699 -23.53339 -22.78727 -20.96154 -19.50129 -19.31506 -18.44785 -18.22145 -17.68363 -17.39089 -16.56915 -16.18038 -16.04516 -15.53799 -15.16259 -15.05228 -14.95959 -14.72624 -14.46867 -14.15611 -14.00113 -13.91840 -13.44141 -13.30289 -13.16432 -12.87610 -12.71542 -12.50178 -12.19005 -12.01100 -11.95639 -11.55705 -11.51960 -11.28850 -11.15893 -10.94993 -10.82032 -10.74626 -10.60758 -10.49374 -10.07079 -9.97938 -9.53899 -9.42689 -8.98348 -8.54921 -8.18061 -7.87529 -6.31251 -3.82588 -0.19788 0.38132 2.23245 2.47341 3.01322 3.05173 3.13823 3.16011 3.33252 3.58158 3.74137 3.79428 3.90350 4.08761 4.09614 4.47544 4.51610 4.61055 4.73463 4.84660 4.86609 4.91290 4.99554 5.07276 5.20232 5.24957 5.36996 5.45125 5.54774 5.59878 5.64820 5.70422 5.74943 5.81936 5.88154 5.90613 5.96557 6.03008 6.15010 6.32644 6.45537 6.53342 6.91165 7.06773 7.19206 7.32973 7.58811 7.65705 8.14838 8.60396 8.95458 9.42506 9.84036 10.81943 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016568 B = 0.002257 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.555810 B =12401.766394 C =13582.408718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.510 5.510 3 C 0.042 3.958 4 C 0.453 3.547 5 O -0.558 6.558 6 N -0.592 5.592 7 C -0.303 4.303 8 H 0.119 0.881 9 C 0.040 3.960 10 N -0.882 5.882 11 Si 0.880 3.120 12 H -0.272 1.272 13 H -0.277 1.277 14 H -0.269 1.269 15 C 0.083 3.917 16 C -0.124 4.124 17 C 0.110 3.890 18 N -0.586 5.586 19 C 0.574 3.426 20 O -0.531 6.531 21 C 0.032 3.968 22 C 0.111 3.889 23 N -0.438 5.438 24 C 0.074 3.926 25 C 0.045 3.955 26 N -0.402 5.402 27 C 0.079 3.921 28 C -0.173 4.173 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.017 0.983 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.184 0.816 42 H 0.178 0.822 43 H 0.181 0.819 44 H 0.069 0.931 45 H 0.141 0.859 46 H 0.069 0.931 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.866 -13.203 -26.683 29.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.232 5.232 3 C -0.089 4.089 4 C 0.239 3.761 5 O -0.440 6.440 6 N -0.232 5.232 7 C -0.432 4.432 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.522 5.522 11 Si 0.706 3.294 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.026 4.026 16 C -0.163 4.163 17 C -0.012 4.012 18 N -0.318 5.318 19 C 0.359 3.641 20 O -0.407 6.407 21 C -0.108 4.108 22 C -0.048 4.048 23 N -0.152 5.152 24 C -0.087 4.087 25 C -0.117 4.117 26 N -0.120 5.120 27 C -0.044 4.044 28 C -0.213 4.213 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.035 0.965 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.202 0.798 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.201 0.799 42 H 0.195 0.805 43 H 0.198 0.802 44 H 0.087 0.913 45 H 0.157 0.843 46 H 0.088 0.912 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.387 -14.295 -25.357 29.142 hybrid contribution 0.684 1.649 -1.635 2.421 sum 2.071 -12.646 -26.992 29.879 Atomic orbital electron populations 1.22601 0.86924 1.02184 1.01350 1.61811 1.08768 1.12409 1.40222 1.21900 1.00705 0.89551 0.96759 1.19668 0.85067 0.82377 0.89022 1.90532 1.42599 1.64066 1.46813 1.42218 1.51007 1.12025 1.17939 1.19421 1.33637 0.96188 0.93958 0.86295 1.25039 0.97929 0.96526 0.96748 1.69624 1.45844 1.13548 1.23199 0.86673 0.80481 0.80528 0.81708 1.19714 1.20195 1.19483 1.21806 0.99685 0.93367 0.87732 1.21965 1.01633 0.94451 0.98234 1.21767 1.00020 0.97605 0.81807 1.48009 1.56617 1.11765 1.15366 1.17646 0.78408 0.85280 0.82776 1.90806 1.50530 1.18100 1.81313 1.22265 0.98183 0.93287 0.97101 1.23855 0.93080 0.99973 0.87913 1.68659 1.18901 1.09174 1.18459 1.24150 0.92098 0.91475 1.00987 1.24096 0.96733 1.01402 0.89420 1.68431 1.18232 1.07470 1.17905 1.23004 1.01107 0.78600 1.01683 1.22794 1.01933 1.00336 0.96241 0.91909 0.88703 0.96497 0.89377 0.93325 0.79780 0.91644 0.89903 0.91151 0.89330 0.88620 0.90864 0.79940 0.80534 0.80244 0.91312 0.84263 0.91246 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.46 60.06 0.51 0.77 16 2 N -0.51 -7.85 4.49 -236.28 -1.06 -8.91 16 3 C 0.04 0.69 4.89 -4.98 -0.02 0.66 16 4 C 0.45 10.13 7.47 -10.99 -0.08 10.05 16 5 O -0.56 -14.74 13.91 5.54 0.08 -14.66 16 6 N -0.59 -13.93 5.09 -10.96 -0.06 -13.99 16 7 C -0.30 -8.51 10.16 -14.94 -0.15 -8.66 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 10 N -0.88 -25.67 13.96 55.50 0.77 -24.90 16 11 Si 0.88 19.14 27.74 -169.99 -4.71 14.43 16 12 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 13 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 14 H -0.27 -5.31 6.52 56.52 0.37 -4.95 16 15 C 0.08 0.96 2.19 -67.67 -0.15 0.81 16 16 C -0.12 -1.33 5.11 -26.60 -0.14 -1.46 16 17 C 0.11 1.06 6.44 -3.71 -0.02 1.03 16 18 N -0.59 -5.86 2.97 -173.50 -0.51 -6.38 16 19 C 0.57 6.31 7.66 -12.19 -0.09 6.22 16 20 O -0.53 -7.08 15.81 5.35 0.08 -6.99 16 21 C 0.03 0.29 6.58 -82.85 -0.55 -0.26 16 22 C 0.11 0.93 10.77 -17.00 -0.18 0.75 16 23 N -0.44 -3.37 10.49 -12.71 -0.13 -3.51 16 24 C 0.07 0.35 11.23 -17.24 -0.19 0.16 16 25 C 0.04 0.21 11.22 -17.39 -0.20 0.02 16 26 N -0.40 -3.03 6.30 -9.62 -0.06 -3.09 16 27 C 0.08 0.69 5.94 -3.49 -0.02 0.67 16 28 C -0.17 -1.74 4.67 -26.39 -0.12 -1.87 16 29 H 0.06 0.89 6.36 -51.93 -0.33 0.56 16 30 H 0.09 1.84 5.82 -51.93 -0.30 1.53 16 31 H 0.02 0.24 6.31 -51.93 -0.33 -0.09 16 32 H 0.09 1.26 8.00 -51.93 -0.42 0.84 16 33 H 0.05 0.70 6.90 -51.92 -0.36 0.34 16 34 H 0.37 7.60 5.76 -40.82 -0.24 7.37 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 37 H 0.07 0.82 6.50 -51.93 -0.34 0.48 16 38 H 0.09 0.96 8.14 -51.94 -0.42 0.54 16 39 H 0.10 0.98 7.00 -51.93 -0.36 0.61 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.18 1.38 7.68 -52.48 -0.40 0.98 16 42 H 0.18 0.22 8.06 -52.49 -0.42 -0.20 16 43 H 0.18 0.22 8.06 -52.48 -0.42 -0.21 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.14 1.18 3.99 -84.35 -0.34 0.84 16 46 H 0.07 0.78 6.47 -51.92 -0.34 0.45 16 47 H 0.08 0.75 6.68 -51.93 -0.35 0.41 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -35.10 371.52 -7.69 -42.79 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -6.18 Total: 9.72 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: -1.51 Total: 9.90 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -1.05 Total: -60.78 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.16 Total: -21.66 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.10 -7.69 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283283660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.784 kcal (2) G-P(sol) polarization free energy of solvation -35.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds