Wall clock time and date at job start Wed Apr 1 2020 06:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00364 * 2 1 4 4 C 1.50701 * 109.47409 * 66.04026 * 3 2 1 5 5 O 1.21300 * 119.99524 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00448 * 180.02562 * 4 3 2 7 7 C 1.37099 * 120.00349 * 180.02562 * 6 4 3 8 8 H 1.08000 * 119.99613 * 359.97438 * 7 6 4 9 9 C 1.38941 * 119.99868 * 179.97438 * 7 6 4 10 10 N 1.31417 * 119.99889 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00667 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47462 * 89.99655 * 11 9 7 13 13 H 1.48496 * 109.47497 * 210.00331 * 11 9 7 14 14 H 1.48505 * 109.46684 * 330.00038 * 11 9 7 15 15 C 1.46898 * 111.00563 * 236.04017 * 2 1 3 16 16 C 1.53047 * 109.45841 * 298.95913 * 15 2 1 17 17 C 1.53201 * 109.30830 * 181.36626 * 16 15 2 18 18 N 1.46924 * 108.77972 * 305.36354 * 17 16 15 19 19 C 1.34771 * 120.63227 * 233.58817 * 18 17 16 20 20 O 1.21515 * 119.99834 * 7.62082 * 19 18 17 21 21 C 1.48145 * 120.00148 * 187.61596 * 19 18 17 22 22 C 1.39438 * 120.10124 * 189.28106 * 21 19 18 23 23 N 1.32076 * 119.87892 * 180.02562 * 22 21 19 24 24 C 1.32141 * 120.06691 * 359.73356 * 23 22 21 25 25 C 1.38727 * 120.19637 * 0.52308 * 24 23 22 26 26 N 1.31796 * 120.12375 * 359.47894 * 25 24 23 27 27 C 1.46924 * 118.73513 * 53.85796 * 18 17 16 28 28 C 1.53045 * 109.44669 * 59.01689 * 15 2 1 29 29 H 1.09001 * 109.47266 * 183.95112 * 1 2 3 30 30 H 1.08995 * 109.47814 * 303.95848 * 1 2 3 31 31 H 1.08999 * 109.46841 * 63.95938 * 1 2 3 32 32 H 1.09002 * 109.47669 * 186.04492 * 3 2 1 33 33 H 1.09007 * 109.46745 * 306.04073 * 3 2 1 34 34 H 0.97004 * 119.99866 * 359.97438 * 6 4 3 35 35 H 0.97001 * 120.00094 * 179.97438 * 10 9 7 36 36 H 1.08996 * 109.46775 * 178.98241 * 15 2 1 37 37 H 1.08997 * 109.49842 * 61.42149 * 16 15 2 38 38 H 1.08989 * 109.52254 * 301.33315 * 16 15 2 39 39 H 1.08997 * 109.57954 * 185.57422 * 17 16 15 40 40 H 1.08999 * 109.69838 * 65.22315 * 17 16 15 41 41 H 1.08007 * 120.06312 * 0.04641 * 22 21 19 42 42 H 1.08002 * 119.89969 * 180.27045 * 24 23 22 43 43 H 1.08003 * 119.93652 * 179.75317 * 25 24 23 44 44 H 1.09000 * 109.58901 * 65.93342 * 27 18 17 45 45 H 1.09004 * 109.58739 * 186.35365 * 27 18 17 46 46 H 1.09008 * 109.49605 * 298.57306 * 28 15 2 47 47 H 1.08998 * 109.49755 * 58.66804 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0052 1.4453 2.1411 6 7 2.0180 3.3202 1.5232 7 6 1.6922 3.9348 2.7046 8 1 1.1298 3.3990 3.4549 9 6 2.0856 5.2471 2.9366 10 7 1.7729 5.8364 4.0688 11 14 3.0590 6.1737 1.6392 12 1 2.1226 6.8778 0.7267 13 1 3.9458 7.1649 2.2996 14 1 3.8825 5.2148 0.8596 15 6 1.9955 -0.7661 -1.1374 16 6 1.5260 -2.2191 -1.0346 17 6 2.1049 -3.0224 -2.2036 18 7 1.7389 -2.3576 -3.4617 19 6 1.1179 -3.0404 -4.4438 20 8 0.7316 -4.1751 -4.2443 21 6 0.9062 -2.4075 -5.7664 22 6 0.0995 -3.0299 -6.7184 23 7 -0.0858 -2.4620 -7.8963 24 6 0.4879 -1.3036 -8.1705 25 6 1.2953 -0.6844 -7.2275 26 7 1.4855 -1.2443 -6.0496 27 6 2.0680 -0.9358 -3.6310 28 6 1.4846 -0.1543 -2.4440 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3634 0.5740 0.8523 31 1 -0.3633 0.4512 -0.9233 32 1 3.0798 1.3444 -0.1082 33 1 1.5612 1.9273 -0.8310 34 1 2.5235 3.8014 0.8495 35 1 2.0479 6.7524 4.2309 36 1 3.0849 -0.7346 -1.1234 37 1 0.4373 -2.2533 -1.0737 38 1 1.8700 -2.6473 -0.0932 39 1 1.6951 -4.0323 -2.1913 40 1 3.1905 -3.0675 -2.1165 41 1 -0.3732 -3.9745 -6.4928 42 1 0.3310 -0.8396 -9.1330 43 1 1.7653 0.2604 -7.4574 44 1 3.1506 -0.8118 -3.6569 45 1 1.6339 -0.5684 -4.5609 46 1 0.3962 -0.2080 -2.4696 47 1 1.7995 0.8873 -2.5055 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283283660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:48 Heat of formation + Delta-G solvation = -4.368047 kcal Electronic energy + Delta-G solvation = -30453.761820 eV Core-core repulsion = 26251.185284 eV Total energy + Delta-G solvation = -4202.576536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.50304 -41.13037 -40.39563 -39.18121 -36.96397 -35.92631 -35.52575 -33.73821 -33.16261 -32.24994 -31.88504 -29.53309 -27.54132 -26.84064 -25.89917 -25.58517 -24.29812 -23.83853 -21.82357 -21.19643 -20.35178 -20.07315 -19.04480 -18.26822 -18.00786 -17.79995 -17.11323 -16.79925 -16.77335 -16.57699 -16.22181 -15.93371 -15.61493 -15.43944 -15.17432 -15.14447 -14.88652 -14.73199 -14.46075 -14.29108 -13.95228 -13.86616 -13.71366 -13.50297 -13.11234 -12.90304 -12.73114 -12.54866 -12.48160 -12.38495 -12.23332 -11.96012 -11.89889 -11.60273 -11.48889 -11.46817 -11.36170 -10.55976 -10.35341 -10.21085 -9.97812 -9.75194 -9.06193 -8.39129 -5.99961 -0.71134 -0.07493 1.31552 1.37340 1.46502 1.54926 1.77414 1.99145 2.25173 2.61019 2.65049 2.80695 3.14739 3.17127 3.26673 3.35537 3.52102 3.77179 3.91104 4.05072 4.08336 4.09527 4.20918 4.27259 4.29979 4.36712 4.41140 4.49109 4.51721 4.52856 4.64706 4.72914 4.81412 4.91250 4.96265 5.05436 5.08273 5.20376 5.29995 5.33799 5.55531 5.62690 5.93093 5.99134 6.04526 6.21174 6.23947 6.56243 6.62566 6.89785 6.91351 7.42803 8.01113 8.78656 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016568 B = 0.002257 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.555810 B =12401.766394 C =13582.408718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.532 5.532 3 C 0.055 3.945 4 C 0.450 3.550 5 O -0.607 6.607 6 N -0.593 5.593 7 C -0.326 4.326 8 H 0.053 0.947 9 C -0.018 4.018 10 N -0.937 5.937 11 Si 0.966 3.034 12 H -0.257 1.257 13 H -0.277 1.277 14 H -0.228 1.228 15 C 0.086 3.914 16 C -0.118 4.118 17 C 0.114 3.886 18 N -0.587 5.587 19 C 0.568 3.432 20 O -0.567 6.567 21 C 0.012 3.988 22 C 0.100 3.900 23 N -0.461 5.461 24 C 0.085 3.915 25 C 0.056 3.944 26 N -0.412 5.412 27 C 0.083 3.917 28 C -0.166 4.166 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.034 0.966 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.390 0.610 35 H 0.278 0.722 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.176 0.824 42 H 0.217 0.783 43 H 0.223 0.777 44 H 0.085 0.915 45 H 0.149 0.851 46 H 0.054 0.946 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.419 -11.596 -31.482 33.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.254 5.254 3 C -0.076 4.076 4 C 0.238 3.762 5 O -0.491 6.491 6 N -0.235 5.235 7 C -0.455 4.455 8 H 0.071 0.929 9 C -0.217 4.217 10 N -0.578 5.578 11 Si 0.786 3.214 12 H -0.181 1.181 13 H -0.202 1.202 14 H -0.151 1.151 15 C -0.022 4.022 16 C -0.157 4.157 17 C -0.008 4.008 18 N -0.318 5.318 19 C 0.355 3.645 20 O -0.447 6.447 21 C -0.126 4.126 22 C -0.058 4.058 23 N -0.175 5.175 24 C -0.077 4.077 25 C -0.107 4.107 26 N -0.130 5.130 27 C -0.039 4.039 28 C -0.205 4.205 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.139 0.861 33 H 0.098 0.902 34 H 0.225 0.775 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.193 0.807 42 H 0.234 0.766 43 H 0.239 0.761 44 H 0.103 0.897 45 H 0.165 0.835 46 H 0.073 0.927 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.945 -12.730 -30.158 32.971 hybrid contribution -0.198 1.110 -0.153 1.137 sum 3.747 -11.621 -30.310 32.677 Atomic orbital electron populations 1.22394 0.87690 1.01958 1.00116 1.61732 1.08348 1.12414 1.42956 1.21833 1.02791 0.89707 0.93247 1.20969 0.82862 0.81731 0.90600 1.90526 1.44212 1.65167 1.49221 1.42031 1.51838 1.12653 1.16946 1.18976 1.34635 0.96951 0.94937 0.92897 1.26151 0.98762 0.97014 0.99731 1.69817 1.47418 1.14314 1.26225 0.85348 0.78858 0.79024 0.78191 1.18138 1.20207 1.15113 1.21882 1.00402 0.92812 0.87065 1.21884 1.00697 0.94520 0.98584 1.21718 1.00912 0.96804 0.81360 1.48117 1.56165 1.12371 1.15110 1.17998 0.77805 0.84992 0.83693 1.90775 1.52062 1.19701 1.82146 1.21906 0.99894 0.94536 0.96313 1.23767 0.93477 1.00117 0.88421 1.68691 1.20019 1.10739 1.18072 1.24891 0.90276 0.90099 1.02392 1.24822 0.95640 1.02164 0.88041 1.68316 1.18345 1.06877 1.19480 1.23105 1.01986 0.77426 1.01363 1.22727 1.01029 1.01117 0.95666 0.91267 0.93107 0.94811 0.86071 0.90219 0.77484 0.91230 0.88246 0.92676 0.89806 0.89768 0.88966 0.80692 0.76649 0.76068 0.89725 0.83489 0.92692 0.89098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 8.46 127.69 1.08 1.90 16 2 N -0.53 -15.51 4.49 -901.46 -4.04 -19.56 16 3 C 0.06 1.63 4.89 85.56 0.42 2.04 16 4 C 0.45 20.08 7.47 87.66 0.66 20.73 16 5 O -0.61 -33.54 13.91 -3.09 -0.04 -33.58 16 6 N -0.59 -27.53 5.09 -306.99 -1.56 -29.09 16 7 C -0.33 -19.00 10.16 84.04 0.85 -18.15 16 8 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 9 C -0.02 -1.02 5.50 84.92 0.47 -0.55 16 10 N -0.94 -56.51 13.96 21.66 0.30 -56.21 16 11 Si 0.97 38.04 27.74 68.60 1.90 39.94 16 12 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 13 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 14 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 15 C 0.09 1.76 2.19 44.95 0.10 1.85 16 16 C -0.12 -2.41 5.11 30.68 0.16 -2.25 16 17 C 0.11 2.06 6.44 86.37 0.56 2.62 16 18 N -0.59 -10.87 2.97 -821.14 -2.44 -13.30 16 19 C 0.57 12.36 7.66 86.88 0.67 13.02 16 20 O -0.57 -15.72 15.81 -3.76 -0.06 -15.78 16 21 C 0.01 0.20 6.58 41.89 0.28 0.47 16 22 C 0.10 1.65 10.77 84.95 0.91 2.56 16 23 N -0.46 -6.30 10.49 -194.12 -2.04 -8.34 16 24 C 0.09 0.50 11.23 84.76 0.95 1.45 16 25 C 0.06 0.28 11.22 84.82 0.95 1.24 16 26 N -0.41 -4.98 6.30 -184.34 -1.16 -6.14 16 27 C 0.08 1.19 5.94 86.51 0.51 1.70 16 28 C -0.17 -2.77 4.67 30.82 0.14 -2.63 16 29 H 0.07 2.01 6.36 -2.39 -0.02 2.00 16 30 H 0.05 2.05 5.82 -2.39 -0.01 2.04 16 31 H 0.03 0.92 6.31 -2.39 -0.02 0.90 16 32 H 0.12 2.85 8.00 -2.39 -0.02 2.83 16 33 H 0.08 1.92 6.90 -2.38 -0.02 1.90 16 34 H 0.39 14.75 5.76 -92.71 -0.53 14.22 16 35 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.10 1.75 8.03 -2.39 -0.02 1.74 16 37 H 0.05 1.28 6.50 -2.39 -0.02 1.27 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.08 1.74 7.00 -2.39 -0.02 1.72 16 40 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.18 2.90 7.68 -2.91 -0.02 2.88 16 42 H 0.22 -0.58 8.06 -2.91 -0.02 -0.60 16 43 H 0.22 -0.84 8.06 -2.91 -0.02 -0.86 16 44 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.15 1.97 3.99 -66.41 -0.27 1.71 16 46 H 0.05 1.10 6.47 -2.38 -0.02 1.09 16 47 H 0.09 1.31 6.68 -2.39 -0.02 1.29 16 Total: -1.00 -85.18 371.52 -0.25 -85.44 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 0.18 Total: 30.59 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 8.70 Total: 26.02 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -10.94 Total: -132.63 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -0.10 Total: -49.36 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.90 Total: 39.94 kcal Total: -85.18 -0.25 -85.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283283660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.068 kcal (2) G-P(sol) polarization free energy of solvation -85.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds