Wall clock time and date at job start Wed Apr 1 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99866 * 2 1 4 4 C 1.50699 * 109.47171 * 66.05012 * 3 2 1 5 5 O 1.21291 * 120.00236 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00134 * 180.02562 * 4 3 2 7 7 C 1.37097 * 120.00093 * 179.97438 * 6 4 3 8 8 H 1.07995 * 120.00170 * 359.97438 * 7 6 4 9 9 C 1.38950 * 119.99838 * 179.97438 * 7 6 4 10 10 N 1.31415 * 119.99958 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99915 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47157 * 59.99749 * 11 9 7 13 13 H 1.48506 * 109.46769 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46737 * 299.99542 * 11 9 7 15 15 C 1.46897 * 110.99863 * 236.04620 * 2 1 3 16 16 C 1.53035 * 109.46122 * 298.95192 * 15 2 1 17 17 C 1.53197 * 109.31369 * 181.37319 * 16 15 2 18 18 N 1.46927 * 108.77448 * 305.36554 * 17 16 15 19 19 C 1.34774 * 120.63145 * 233.58547 * 18 17 16 20 20 O 1.21515 * 119.99717 * 7.58783 * 19 18 17 21 21 C 1.48155 * 120.00186 * 187.59047 * 19 18 17 22 22 C 1.39716 * 120.18282 * 189.20269 * 21 19 18 23 23 C 1.38817 * 117.89757 * 179.97438 * 22 21 19 24 24 C 1.38569 * 118.07051 * 359.97438 * 23 22 21 25 25 N 1.32180 * 120.06625 * 0.02562 * 24 23 22 26 26 N 1.28345 * 122.29794 * 359.97438 * 25 24 23 27 27 C 1.46927 * 118.73556 * 53.85815 * 18 17 16 28 28 C 1.53035 * 109.45047 * 59.01634 * 15 2 1 29 29 H 1.08998 * 109.46791 * 183.95453 * 1 2 3 30 30 H 1.09001 * 109.47099 * 303.95323 * 1 2 3 31 31 H 1.08997 * 109.47222 * 63.95145 * 1 2 3 32 32 H 1.09003 * 109.47157 * 186.04745 * 3 2 1 33 33 H 1.08997 * 109.47154 * 306.04239 * 3 2 1 34 34 H 0.97005 * 119.99335 * 359.97438 * 6 4 3 35 35 H 0.97000 * 119.99964 * 180.02562 * 10 9 7 36 36 H 1.09009 * 109.45723 * 178.97984 * 15 2 1 37 37 H 1.09004 * 109.49707 * 61.42356 * 16 15 2 38 38 H 1.09006 * 109.50058 * 301.32320 * 16 15 2 39 39 H 1.09000 * 109.58337 * 185.58120 * 17 16 15 40 40 H 1.09003 * 109.70276 * 65.22194 * 17 16 15 41 41 H 1.08000 * 121.05153 * 359.97438 * 22 21 19 42 42 H 1.08001 * 120.96450 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.97007 * 180.02562 * 24 23 22 44 44 H 1.09006 * 109.58467 * 65.92979 * 27 18 17 45 45 H 1.09006 * 109.58183 * 186.35042 * 27 18 17 46 46 H 1.09000 * 109.49921 * 298.57439 * 28 15 2 47 47 H 1.09002 * 109.50109 * 58.66682 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0048 1.4456 2.1408 6 7 2.0181 3.3202 1.5234 7 6 1.6915 3.9351 2.7044 8 1 1.1286 3.3994 3.4544 9 6 2.0848 5.2474 2.9364 10 7 2.7703 5.8990 2.0239 11 14 1.6405 6.0849 4.5460 12 1 2.2323 5.3275 5.6779 13 1 2.1733 7.4711 4.5461 14 1 0.1633 6.1218 4.6934 15 6 1.9954 -0.7660 -1.1376 16 6 1.5260 -2.2189 -1.0348 17 6 2.1049 -3.0222 -2.2038 18 7 1.7387 -2.3573 -3.4618 19 6 1.1177 -3.0401 -4.4439 20 8 0.7320 -4.1750 -4.2447 21 6 0.9053 -2.4069 -5.7664 22 6 0.0987 -3.0298 -6.7221 23 6 -0.0682 -2.3944 -7.9450 24 6 0.5739 -1.1826 -8.1432 25 7 1.3198 -0.6636 -7.1832 26 7 1.4798 -1.2438 -6.0496 27 6 2.0679 -0.9354 -3.6311 28 6 1.4845 -0.1542 -2.4440 29 1 -0.3633 -1.0252 0.0709 30 1 -0.3633 0.5740 0.8524 31 1 -0.3633 0.4513 -0.9232 32 1 3.0797 1.3445 -0.1083 33 1 1.5611 1.9273 -0.8309 34 1 2.5234 3.8014 0.8495 35 1 3.0452 6.8150 2.1861 36 1 3.0850 -0.7344 -1.1235 37 1 0.4372 -2.2531 -1.0737 38 1 1.8706 -2.6469 -0.0934 39 1 1.6950 -4.0322 -2.1916 40 1 3.1905 -3.0673 -2.1169 41 1 -0.3799 -3.9758 -6.5159 42 1 -0.6807 -2.8319 -8.7195 43 1 0.4649 -0.6616 -9.0829 44 1 3.1506 -0.8116 -3.6570 45 1 1.6336 -0.5681 -4.5610 46 1 0.3961 -0.2077 -2.4696 47 1 1.7994 0.8875 -2.5056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283335387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:32 Heat of formation + Delta-G solvation = 26.160920 kcal Electronic energy + Delta-G solvation = -30367.666191 eV Core-core repulsion = 26166.413490 eV Total energy + Delta-G solvation = -4201.252701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.82405 -40.22066 -38.94064 -37.72997 -35.76188 -33.92371 -33.74221 -33.45314 -31.45485 -31.16236 -30.99529 -27.90037 -26.61695 -25.49192 -25.23752 -24.47762 -23.43165 -22.82764 -20.94636 -19.50238 -19.04821 -18.36140 -17.79514 -17.60839 -17.25276 -16.47100 -16.15316 -16.02495 -15.20565 -15.10462 -14.93783 -14.66524 -14.62535 -14.31016 -14.09119 -13.92358 -13.85031 -13.61857 -13.51027 -13.18366 -12.65055 -12.44891 -12.22099 -11.97620 -11.58793 -11.48529 -11.38166 -11.19974 -11.13380 -10.94422 -10.83519 -10.79348 -10.63700 -10.42053 -10.41248 -10.34826 -10.18328 -9.85999 -9.43498 -8.94275 -8.38822 -7.93765 -7.73928 -6.38708 -3.79379 -0.09104 0.16977 2.21216 2.49336 3.10650 3.22001 3.27406 3.31812 3.34193 3.82810 3.94197 3.94689 4.01257 4.12328 4.26868 4.27690 4.49418 4.68214 4.85370 4.95358 5.04487 5.12420 5.14921 5.16002 5.27607 5.28000 5.34869 5.41609 5.50412 5.56379 5.72627 5.79941 5.80812 5.86360 5.94013 5.99635 6.01886 6.12205 6.24487 6.32938 6.38881 6.61892 7.00950 7.34011 7.45656 7.57886 7.63254 7.99447 8.09615 8.65498 9.21326 9.58097 10.10371 10.79032 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.002086 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.089421 B =13420.227433 C =14417.627537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.510 5.510 3 C 0.045 3.955 4 C 0.444 3.556 5 O -0.578 6.578 6 N -0.565 5.565 7 C -0.298 4.298 8 H 0.102 0.898 9 C 0.022 3.978 10 N -0.903 5.903 11 Si 0.930 3.070 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.083 3.917 16 C -0.124 4.124 17 C 0.111 3.889 18 N -0.585 5.585 19 C 0.573 3.427 20 O -0.533 6.533 21 C 0.028 3.972 22 C -0.066 4.066 23 C -0.119 4.119 24 C 0.057 3.943 25 N -0.245 5.245 26 N -0.204 5.204 27 C 0.079 3.921 28 C -0.172 4.172 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.016 0.984 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.392 0.608 35 H 0.272 0.728 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.179 0.821 44 H 0.073 0.927 45 H 0.139 0.861 46 H 0.068 0.932 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.724 -16.111 -22.932 28.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.232 5.232 3 C -0.087 4.087 4 C 0.230 3.770 5 O -0.462 6.462 6 N -0.202 5.202 7 C -0.428 4.428 8 H 0.120 0.880 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.757 3.243 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.200 1.200 15 C -0.026 4.026 16 C -0.163 4.163 17 C -0.012 4.012 18 N -0.316 5.316 19 C 0.358 3.642 20 O -0.409 6.409 21 C -0.117 4.117 22 C -0.095 4.095 23 C -0.148 4.148 24 C -0.106 4.106 25 N -0.087 5.087 26 N -0.050 5.050 27 C -0.044 4.044 28 C -0.212 4.212 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.034 0.966 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.181 0.819 42 H 0.177 0.823 43 H 0.196 0.804 44 H 0.091 0.909 45 H 0.156 0.844 46 H 0.087 0.913 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.141 -15.914 -21.267 26.649 hybrid contribution -1.002 0.227 -0.936 1.390 sum -3.143 -15.688 -22.203 27.367 Atomic orbital electron populations 1.22586 0.87161 1.01912 1.01319 1.61831 1.08602 1.12745 1.40014 1.21868 1.00631 0.89166 0.96989 1.19766 0.85374 0.82899 0.88980 1.90482 1.43874 1.64675 1.47162 1.41866 1.49511 1.10779 1.18039 1.19638 1.32911 0.95425 0.94797 0.88014 1.25254 0.96874 0.96663 0.99194 1.69606 1.38047 1.12289 1.34460 0.85928 0.78866 0.77917 0.81559 1.19909 1.21012 1.19962 1.21804 0.99757 0.93235 0.87834 1.21967 1.01561 0.94610 0.98128 1.21780 1.00126 0.97507 0.81744 1.48038 1.56327 1.11877 1.15354 1.17603 0.78528 0.85316 0.82757 1.90795 1.50686 1.18131 1.81326 1.22925 0.97498 0.94431 0.96889 1.22442 0.94248 1.00719 0.92095 1.22514 0.98899 0.95530 0.97833 1.24539 0.92059 0.93789 1.00189 1.73215 1.12533 1.26601 0.96321 1.73193 1.15832 1.05461 1.10510 1.22994 1.01455 0.78285 1.01675 1.22776 1.01822 1.00571 0.96010 0.92134 0.88771 0.96560 0.89470 0.93360 0.77507 0.91862 0.89848 0.91214 0.89361 0.88682 0.90723 0.81909 0.82273 0.80367 0.90852 0.84437 0.91314 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.46 60.07 0.51 0.80 16 2 N -0.51 -8.41 4.49 -236.28 -1.06 -9.47 16 3 C 0.04 0.80 4.89 -4.98 -0.02 0.77 16 4 C 0.44 10.52 7.48 -10.98 -0.08 10.43 16 5 O -0.58 -15.60 13.91 5.55 0.08 -15.52 16 6 N -0.57 -14.38 5.29 -10.96 -0.06 -14.44 16 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 11 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 C 0.08 1.05 2.18 -67.68 -0.15 0.90 16 16 C -0.12 -1.41 5.11 -26.61 -0.14 -1.55 16 17 C 0.11 1.13 6.44 -3.71 -0.02 1.10 16 18 N -0.58 -6.38 2.97 -173.49 -0.51 -6.90 16 19 C 0.57 6.66 7.66 -12.19 -0.09 6.57 16 20 O -0.53 -7.26 15.86 5.35 0.08 -7.18 16 21 C 0.03 0.27 6.66 -82.83 -0.55 -0.28 16 22 C -0.07 -0.46 9.73 -38.82 -0.38 -0.83 16 23 C -0.12 -0.51 10.20 -39.24 -0.40 -0.91 16 24 C 0.06 0.31 11.31 -17.28 -0.20 0.11 16 25 N -0.24 -2.26 11.51 30.59 0.35 -1.91 16 26 N -0.20 -2.09 7.33 33.32 0.24 -1.85 16 27 C 0.08 0.82 5.94 -3.49 -0.02 0.80 16 28 C -0.17 -1.98 4.67 -26.39 -0.12 -2.11 16 29 H 0.06 0.90 6.36 -51.93 -0.33 0.57 16 30 H 0.09 1.90 5.82 -51.93 -0.30 1.60 16 31 H 0.02 0.25 6.31 -51.93 -0.33 -0.08 16 32 H 0.09 1.41 8.00 -51.93 -0.42 1.00 16 33 H 0.05 0.80 6.90 -51.93 -0.36 0.44 16 34 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 35 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.08 1.01 8.03 -51.92 -0.42 0.59 16 37 H 0.07 0.85 6.50 -51.93 -0.34 0.52 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.01 7.00 -51.93 -0.36 0.64 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.16 0.93 7.75 -52.49 -0.41 0.53 16 42 H 0.16 0.10 8.06 -52.49 -0.42 -0.33 16 43 H 0.18 0.32 8.06 -52.49 -0.42 -0.10 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.14 1.49 3.99 -134.03 -0.53 0.96 16 46 H 0.07 0.86 6.47 -51.93 -0.34 0.53 16 47 H 0.08 0.94 6.69 -51.93 -0.35 0.59 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -34.15 374.91 -7.86 -42.01 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -6.42 Total: 9.56 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -1.91 Total: 7.82 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.31 Total: -58.51 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: 0.16 Total: -22.70 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.15 -7.86 -42.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283335387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.167 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds