Wall clock time and date at job start Wed Apr 1 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99866 * 2 1 4 4 C 1.50699 * 109.47171 * 66.05012 * 3 2 1 5 5 O 1.21291 * 120.00236 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00134 * 180.02562 * 4 3 2 7 7 C 1.37097 * 120.00093 * 179.97438 * 6 4 3 8 8 H 1.07995 * 120.00170 * 359.97438 * 7 6 4 9 9 C 1.38950 * 119.99838 * 179.97438 * 7 6 4 10 10 N 1.31415 * 119.99958 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99915 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47157 * 59.99749 * 11 9 7 13 13 H 1.48506 * 109.46769 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46737 * 299.99542 * 11 9 7 15 15 C 1.46897 * 110.99863 * 236.04620 * 2 1 3 16 16 C 1.53035 * 109.46122 * 298.95192 * 15 2 1 17 17 C 1.53197 * 109.31369 * 181.37319 * 16 15 2 18 18 N 1.46927 * 108.77448 * 305.36554 * 17 16 15 19 19 C 1.34774 * 120.63145 * 233.58547 * 18 17 16 20 20 O 1.21515 * 119.99717 * 7.58783 * 19 18 17 21 21 C 1.48155 * 120.00186 * 187.59047 * 19 18 17 22 22 C 1.39716 * 120.18282 * 189.20269 * 21 19 18 23 23 C 1.38817 * 117.89757 * 179.97438 * 22 21 19 24 24 C 1.38569 * 118.07051 * 359.97438 * 23 22 21 25 25 N 1.32180 * 120.06625 * 0.02562 * 24 23 22 26 26 N 1.28345 * 122.29794 * 359.97438 * 25 24 23 27 27 C 1.46927 * 118.73556 * 53.85815 * 18 17 16 28 28 C 1.53035 * 109.45047 * 59.01634 * 15 2 1 29 29 H 1.08998 * 109.46791 * 183.95453 * 1 2 3 30 30 H 1.09001 * 109.47099 * 303.95323 * 1 2 3 31 31 H 1.08997 * 109.47222 * 63.95145 * 1 2 3 32 32 H 1.09003 * 109.47157 * 186.04745 * 3 2 1 33 33 H 1.08997 * 109.47154 * 306.04239 * 3 2 1 34 34 H 0.97005 * 119.99335 * 359.97438 * 6 4 3 35 35 H 0.97000 * 119.99964 * 180.02562 * 10 9 7 36 36 H 1.09009 * 109.45723 * 178.97984 * 15 2 1 37 37 H 1.09004 * 109.49707 * 61.42356 * 16 15 2 38 38 H 1.09006 * 109.50058 * 301.32320 * 16 15 2 39 39 H 1.09000 * 109.58337 * 185.58120 * 17 16 15 40 40 H 1.09003 * 109.70276 * 65.22194 * 17 16 15 41 41 H 1.08000 * 121.05153 * 359.97438 * 22 21 19 42 42 H 1.08001 * 120.96450 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.97007 * 180.02562 * 24 23 22 44 44 H 1.09006 * 109.58467 * 65.92979 * 27 18 17 45 45 H 1.09006 * 109.58183 * 186.35042 * 27 18 17 46 46 H 1.09000 * 109.49921 * 298.57439 * 28 15 2 47 47 H 1.09002 * 109.50109 * 58.66682 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0048 1.4456 2.1408 6 7 2.0181 3.3202 1.5234 7 6 1.6915 3.9351 2.7044 8 1 1.1286 3.3994 3.4544 9 6 2.0848 5.2474 2.9364 10 7 2.7703 5.8990 2.0239 11 14 1.6405 6.0849 4.5460 12 1 2.2323 5.3275 5.6779 13 1 2.1733 7.4711 4.5461 14 1 0.1633 6.1218 4.6934 15 6 1.9954 -0.7660 -1.1376 16 6 1.5260 -2.2189 -1.0348 17 6 2.1049 -3.0222 -2.2038 18 7 1.7387 -2.3573 -3.4618 19 6 1.1177 -3.0401 -4.4439 20 8 0.7320 -4.1750 -4.2447 21 6 0.9053 -2.4069 -5.7664 22 6 0.0987 -3.0298 -6.7221 23 6 -0.0682 -2.3944 -7.9450 24 6 0.5739 -1.1826 -8.1432 25 7 1.3198 -0.6636 -7.1832 26 7 1.4798 -1.2438 -6.0496 27 6 2.0679 -0.9354 -3.6311 28 6 1.4845 -0.1542 -2.4440 29 1 -0.3633 -1.0252 0.0709 30 1 -0.3633 0.5740 0.8524 31 1 -0.3633 0.4513 -0.9232 32 1 3.0797 1.3445 -0.1083 33 1 1.5611 1.9273 -0.8309 34 1 2.5234 3.8014 0.8495 35 1 3.0452 6.8150 2.1861 36 1 3.0850 -0.7344 -1.1235 37 1 0.4372 -2.2531 -1.0737 38 1 1.8706 -2.6469 -0.0934 39 1 1.6950 -4.0322 -2.1916 40 1 3.1905 -3.0673 -2.1169 41 1 -0.3799 -3.9758 -6.5159 42 1 -0.6807 -2.8319 -8.7195 43 1 0.4649 -0.6616 -9.0829 44 1 3.1506 -0.8116 -3.6570 45 1 1.6336 -0.5681 -4.5610 46 1 0.3961 -0.2077 -2.4696 47 1 1.7994 0.8875 -2.5056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283335387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:30 Heat of formation + Delta-G solvation = 0.463499 kcal Electronic energy + Delta-G solvation = -30368.780515 eV Core-core repulsion = 26166.413490 eV Total energy + Delta-G solvation = -4202.367025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.44092 -41.12674 -40.33540 -39.16066 -36.92579 -35.84437 -34.32505 -34.10970 -33.26679 -32.35969 -31.92262 -29.41192 -27.55646 -26.87931 -25.86323 -25.73945 -24.32552 -23.92865 -21.88628 -20.91499 -20.38455 -19.80892 -19.08964 -18.20537 -17.94868 -17.70853 -17.11358 -16.87474 -16.61116 -16.53173 -16.25856 -15.75131 -15.69072 -15.51172 -15.17826 -15.10293 -14.92385 -14.78007 -14.46929 -14.16732 -13.93906 -13.72315 -13.48909 -13.21544 -13.06308 -12.89818 -12.70898 -12.49955 -12.42018 -12.24706 -12.11829 -12.08761 -11.82154 -11.48997 -11.38913 -11.33494 -11.25313 -11.02811 -10.57050 -10.24729 -9.98244 -9.81213 -9.08352 -8.44702 -5.93176 -0.64131 -0.30025 1.40262 1.41770 1.48874 1.52711 1.72902 2.07866 2.29248 2.51347 2.68476 2.78300 3.21994 3.30469 3.43284 3.46034 3.70076 3.76287 3.84031 3.93652 4.03961 4.08859 4.14206 4.24990 4.28990 4.36405 4.43009 4.53217 4.54406 4.64639 4.70690 4.73950 4.79561 4.81314 4.90184 4.94536 5.03225 5.07200 5.18173 5.23485 5.31117 5.42470 5.54408 5.91261 6.08507 6.17555 6.24118 6.63111 6.80117 7.15061 7.43851 7.58961 8.15247 8.72494 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.002086 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.089421 B =13420.227433 C =14417.627537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.526 5.526 3 C 0.058 3.942 4 C 0.441 3.559 5 O -0.615 6.615 6 N -0.575 5.575 7 C -0.332 4.332 8 H 0.078 0.922 9 C -0.014 4.014 10 N -0.921 5.921 11 Si 0.992 3.008 12 H -0.272 1.272 13 H -0.270 1.270 14 H -0.272 1.272 15 C 0.086 3.914 16 C -0.116 4.116 17 C 0.114 3.886 18 N -0.587 5.587 19 C 0.570 3.430 20 O -0.562 6.562 21 C 0.006 3.994 22 C -0.076 4.076 23 C -0.095 4.095 24 C 0.061 3.939 25 N -0.279 5.279 26 N -0.225 5.225 27 C 0.086 3.914 28 C -0.164 4.164 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.028 0.972 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.396 0.604 35 H 0.277 0.723 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.171 0.829 42 H 0.205 0.795 43 H 0.217 0.783 44 H 0.083 0.917 45 H 0.140 0.860 46 H 0.057 0.943 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.615 -16.244 -25.341 30.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.249 5.249 3 C -0.073 4.073 4 C 0.229 3.771 5 O -0.501 6.501 6 N -0.213 5.213 7 C -0.461 4.461 8 H 0.096 0.904 9 C -0.214 4.214 10 N -0.562 5.562 11 Si 0.816 3.184 12 H -0.198 1.198 13 H -0.195 1.195 14 H -0.198 1.198 15 C -0.023 4.023 16 C -0.155 4.155 17 C -0.008 4.008 18 N -0.317 5.317 19 C 0.356 3.644 20 O -0.440 6.440 21 C -0.139 4.139 22 C -0.105 4.105 23 C -0.124 4.124 24 C -0.101 4.101 25 N -0.120 5.120 26 N -0.071 5.071 27 C -0.037 4.037 28 C -0.203 4.203 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.230 0.770 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.188 0.812 42 H 0.222 0.778 43 H 0.234 0.766 44 H 0.101 0.899 45 H 0.156 0.844 46 H 0.076 0.924 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.009 -16.036 -23.701 28.687 hybrid contribution -1.082 0.207 -0.316 1.147 sum -3.092 -15.829 -24.017 28.930 Atomic orbital electron populations 1.22407 0.87572 1.02096 1.00030 1.61786 1.08437 1.12154 1.42514 1.21731 1.02067 0.89725 0.93780 1.20807 0.83661 0.82207 0.90453 1.90461 1.45134 1.65405 1.49106 1.41935 1.50127 1.11576 1.17627 1.19602 1.34375 0.96391 0.95749 0.90400 1.26026 0.96334 0.96643 1.02353 1.69668 1.38085 1.12684 1.35736 0.85008 0.78580 0.77309 0.77545 1.19766 1.19479 1.19769 1.21881 1.00280 0.93197 0.86896 1.21882 1.00857 0.94013 0.98738 1.21765 1.01029 0.96903 0.81073 1.48124 1.56081 1.12077 1.15446 1.17936 0.77882 0.85065 0.83554 1.90765 1.51935 1.19285 1.82041 1.22798 0.99296 0.95174 0.96679 1.22675 0.93972 1.01189 0.92677 1.23004 0.97614 0.94390 0.97411 1.25203 0.90324 0.94137 1.00449 1.73123 1.14416 1.27556 0.96928 1.73043 1.16706 1.05776 1.11541 1.22979 1.01924 0.77785 1.01058 1.22683 1.01071 1.00757 0.95833 0.90829 0.92772 0.95364 0.87205 0.91526 0.77041 0.91335 0.88642 0.92331 0.89370 0.89153 0.88972 0.81186 0.77821 0.76617 0.89853 0.84379 0.92442 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 8.46 127.69 1.08 1.98 16 2 N -0.53 -17.09 4.49 -901.47 -4.05 -21.14 16 3 C 0.06 2.03 4.89 85.56 0.42 2.45 16 4 C 0.44 21.28 7.48 87.66 0.66 21.93 16 5 O -0.61 -34.35 13.91 -3.06 -0.04 -34.39 16 6 N -0.58 -29.87 5.29 -306.99 -1.62 -31.49 16 7 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 10 N -0.92 -50.12 13.05 21.66 0.28 -49.83 16 11 Si 0.99 43.43 29.55 68.60 2.03 45.46 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 15 C 0.09 2.05 2.18 44.94 0.10 2.15 16 16 C -0.12 -2.56 5.11 30.67 0.16 -2.40 16 17 C 0.11 2.24 6.44 86.36 0.56 2.79 16 18 N -0.59 -12.44 2.97 -821.10 -2.44 -14.87 16 19 C 0.57 13.14 7.66 86.88 0.67 13.81 16 20 O -0.56 -15.40 15.86 -3.76 -0.06 -15.46 16 21 C 0.01 0.12 6.66 41.99 0.28 0.40 16 22 C -0.08 -0.93 9.73 22.77 0.22 -0.71 16 23 C -0.10 -0.49 10.20 22.49 0.23 -0.26 16 24 C 0.06 0.48 11.31 84.72 0.96 1.43 16 25 N -0.28 -4.72 11.51 -57.15 -0.66 -5.38 16 26 N -0.22 -4.44 7.33 -48.49 -0.36 -4.79 16 27 C 0.09 1.69 5.94 86.51 0.51 2.21 16 28 C -0.16 -3.59 4.67 30.81 0.14 -3.45 16 29 H 0.07 2.22 6.36 -2.39 -0.02 2.20 16 30 H 0.05 2.26 5.82 -2.39 -0.01 2.25 16 31 H 0.03 0.86 6.31 -2.39 -0.02 0.84 16 32 H 0.11 3.37 8.00 -2.39 -0.02 3.35 16 33 H 0.07 2.11 6.90 -2.39 -0.02 2.09 16 34 H 0.40 19.51 7.90 -92.70 -0.73 18.78 16 35 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 36 H 0.10 2.10 8.03 -2.38 -0.02 2.09 16 37 H 0.06 1.42 6.50 -2.39 -0.02 1.40 16 38 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.09 1.89 7.00 -2.39 -0.02 1.87 16 40 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.17 1.72 7.75 -2.91 -0.02 1.70 16 42 H 0.20 -0.84 8.06 -2.91 -0.02 -0.86 16 43 H 0.22 -0.16 8.06 -2.91 -0.02 -0.18 16 44 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.14 2.91 3.99 -108.58 -0.43 2.47 16 46 H 0.06 1.40 6.47 -2.39 -0.02 1.38 16 47 H 0.08 1.78 6.69 -2.39 -0.02 1.77 16 Total: -1.00 -76.75 374.91 0.22 -76.53 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: -0.13 Total: 31.55 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 7.26 Total: 23.84 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -8.83 Total: -127.51 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -0.10 Total: -49.86 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -76.75 0.22 -76.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283335387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.992 kcal (2) G-P(sol) polarization free energy of solvation -76.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds