Wall clock time and date at job start Wed Apr 1 2020 05:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34262 * 125.75275 * 2 1 4 4 C 1.38046 * 107.41402 * 180.02562 * 3 2 1 5 5 C 1.47430 * 126.41388 * 179.97438 * 4 3 2 6 6 O 1.21595 * 120.00030 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99539 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99305 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46784 * 180.02562 * 8 7 5 10 10 C 1.29823 * 118.55903 * 94.99514 * 9 8 7 11 11 C 1.50140 * 123.28749 * 180.39016 * 10 9 8 12 12 N 1.46846 * 110.27590 * 342.93553 * 11 10 9 13 13 C 1.46899 * 111.00302 * 174.31282 * 12 11 10 14 14 C 1.50698 * 109.46987 * 66.03980 * 13 12 11 15 15 O 1.21293 * 120.00006 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99538 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99773 * 179.72591 * 16 14 13 18 18 H 1.08002 * 119.99671 * 0.27660 * 17 16 14 19 19 C 1.38950 * 120.00030 * 180.27703 * 17 16 14 20 20 N 1.31414 * 119.99926 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99969 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47425 * 90.00231 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00087 * 21 19 17 24 24 H 1.48505 * 109.47256 * 330.00093 * 21 19 17 25 25 C 1.47239 * 110.20601 * 50.91850 * 12 11 10 26 26 C 1.50311 * 118.54939 * 275.02136 * 9 8 7 27 27 C 1.41292 * 107.16788 * 0.24147 * 4 3 2 28 28 N 1.30447 * 108.02700 * 359.59118 * 27 4 3 29 29 H 1.08996 * 109.46798 * 89.99246 * 1 2 3 30 30 H 1.08997 * 109.47401 * 209.99945 * 1 2 3 31 31 H 1.09004 * 109.46546 * 329.99845 * 1 2 3 32 32 H 1.07998 * 126.29312 * 359.97438 * 3 2 1 33 33 H 0.96995 * 120.00499 * 0.02562 * 7 5 4 34 34 H 1.08995 * 109.47150 * 60.00098 * 8 7 5 35 35 H 1.09003 * 109.47146 * 299.99438 * 8 7 5 36 36 H 1.08001 * 118.35167 * 0.37934 * 10 9 8 37 37 H 1.08998 * 109.34082 * 222.68723 * 11 10 9 38 38 H 1.09003 * 109.33334 * 103.17518 * 11 10 9 39 39 H 1.09003 * 109.46477 * 306.04469 * 13 12 11 40 40 H 1.08993 * 109.47002 * 186.04796 * 13 12 11 41 41 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 42 42 H 0.96999 * 119.99863 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.63934 * 50.89479 * 25 12 11 44 44 H 1.08999 * 109.63492 * 171.50188 * 25 12 11 45 45 H 1.09006 * 109.42858 * 283.57665 * 26 9 8 46 46 H 1.08998 * 109.43146 * 43.42197 * 26 9 8 47 47 H 1.08008 * 125.98307 * 179.73764 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2496 1.0896 0.0000 4 6 3.5599 0.6553 -0.0006 5 6 4.7639 1.5061 -0.0013 6 8 4.6527 2.7169 -0.0019 7 7 5.9878 0.9417 -0.0013 8 6 7.1842 1.7872 -0.0015 9 6 8.4145 0.9167 -0.0021 10 6 8.9781 0.6396 -1.1383 11 6 10.2008 -0.2228 -1.2629 12 7 10.8699 -0.3482 0.0382 13 6 11.9900 -1.2957 -0.0349 14 6 13.0611 -0.7386 -0.9368 15 8 12.9068 0.3418 -1.4662 16 7 14.1910 -1.4404 -1.1543 17 6 15.1631 -0.9361 -1.9792 18 1 15.0253 0.0255 -2.4512 19 6 16.3255 -1.6622 -2.2081 20 7 16.4929 -2.8325 -1.6341 21 14 17.6502 -0.9749 -3.3314 22 1 18.6073 -0.1682 -2.5325 23 1 18.3730 -2.0942 -3.9871 24 1 17.0234 -0.1157 -4.3680 25 6 9.9019 -0.7540 1.0708 26 6 8.9345 0.4072 1.3129 27 6 3.5310 -0.7574 -0.0066 28 7 2.2826 -1.1357 -0.0006 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 1.9166 2.1170 -0.0004 33 1 6.0765 -0.0242 -0.0012 34 1 7.1845 2.4166 0.8884 35 1 7.1844 2.4164 -0.8916 36 1 8.5456 1.0498 -2.0389 37 1 10.8877 0.2263 -1.9802 38 1 9.9100 -1.2122 -1.6160 39 1 11.6364 -2.2460 -0.4349 40 1 12.3999 -1.4514 0.9629 41 1 14.3147 -2.3042 -0.7307 42 1 17.3045 -3.3392 -1.7936 43 1 9.3465 -1.6275 0.7293 44 1 10.4296 -0.9902 1.9949 45 1 9.4561 1.2110 1.8325 46 1 8.1002 0.0629 1.9239 47 1 4.3919 -1.4097 -0.0126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284881359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:33 Heat of formation + Delta-G solvation = 33.217708 kcal Electronic energy + Delta-G solvation = -28898.849979 eV Core-core repulsion = 24697.903284 eV Total energy + Delta-G solvation = -4200.946696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.76218 -39.68065 -39.01368 -37.70099 -35.42173 -34.03055 -33.85275 -32.86164 -31.22693 -30.79452 -30.72224 -28.68621 -27.46267 -25.85630 -24.25350 -23.58457 -22.90709 -21.86165 -21.36119 -20.40329 -19.21862 -18.56385 -17.87725 -17.41279 -16.39662 -16.16343 -16.10333 -16.06194 -15.43905 -15.22994 -14.99992 -14.72663 -14.61930 -14.22443 -13.86718 -13.83982 -13.72165 -13.52382 -13.39131 -13.15465 -13.12629 -12.82440 -12.60634 -12.24065 -12.15174 -11.84502 -11.52252 -11.48564 -11.32575 -11.07753 -10.84877 -10.43846 -10.38350 -10.20768 -10.13637 -10.06624 -9.48303 -9.32915 -9.00104 -8.86176 -8.45973 -7.97274 -7.82754 -6.41059 -3.81740 1.13560 1.78267 1.84307 2.07609 3.18629 3.24024 3.27350 3.29895 3.32998 3.90573 3.98255 3.99933 4.25508 4.30182 4.48757 4.55928 4.59937 4.75853 4.77515 4.82983 5.01560 5.04268 5.23482 5.25795 5.29288 5.34612 5.46483 5.55782 5.57594 5.70075 5.71456 5.80844 5.93261 5.94981 5.97134 6.13664 6.25503 6.27395 6.31928 6.36261 6.47867 6.94587 7.06232 7.32826 7.36184 7.39145 7.56068 8.07351 8.10242 8.62697 9.19077 9.55324 10.07193 10.76673 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027575 B = 0.001566 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.178158 B =17880.186316 C =18096.043795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.365 5.365 3 C 0.128 3.872 4 C -0.293 4.293 5 C 0.594 3.406 6 O -0.553 6.553 7 N -0.720 5.720 8 C 0.161 3.839 9 C -0.156 4.156 10 C -0.106 4.106 11 C 0.072 3.928 12 N -0.509 5.509 13 C 0.045 3.955 14 C 0.443 3.557 15 O -0.577 6.577 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.050 3.950 26 C -0.071 4.071 27 C 0.083 3.917 28 N -0.298 5.298 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.189 0.811 33 H 0.399 0.601 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.033 0.967 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.559 1.273 6.274 30.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.144 5.144 3 C -0.024 4.024 4 C -0.308 4.308 5 C 0.381 3.619 6 O -0.431 6.431 7 N -0.371 5.371 8 C 0.039 3.961 9 C -0.157 4.157 10 C -0.126 4.126 11 C -0.054 4.054 12 N -0.233 5.233 13 C -0.087 4.087 14 C 0.229 3.771 15 O -0.461 6.461 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.078 4.078 26 C -0.108 4.108 27 C -0.105 4.105 28 N -0.118 5.118 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.206 0.794 33 H 0.233 0.767 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -30.347 2.203 6.035 31.019 hybrid contribution 1.098 -0.891 -0.511 1.503 sum -29.249 1.313 5.524 29.795 Atomic orbital electron populations 1.22018 0.73343 1.05090 1.04037 1.48451 1.07328 1.03860 1.54753 1.22997 0.90115 0.93775 0.95498 1.20287 0.93538 0.93535 1.23472 1.17223 0.82194 0.86859 0.75592 1.90777 1.86904 1.14193 1.51275 1.45867 1.05099 1.10446 1.75697 1.20313 0.81166 0.91914 1.02755 1.20846 0.97185 1.01892 0.95744 1.22347 0.95513 0.97370 0.97372 1.21255 0.94049 0.97405 0.92738 1.62032 1.08090 1.47579 1.05606 1.21906 0.92381 0.93414 1.00964 1.19744 0.84076 0.87068 0.86239 1.90483 1.79617 1.22247 1.53798 1.41868 1.15421 1.19932 1.42870 1.19704 0.95723 1.04752 1.22641 0.87901 1.25250 0.98663 0.95622 0.98373 1.69613 1.28274 1.12445 1.44021 0.85863 0.80300 0.78228 0.79932 1.20405 1.20979 1.19439 1.22220 0.93750 0.95783 0.96093 1.20396 0.97629 0.98265 0.94528 1.24098 0.95380 0.93923 0.97131 1.77208 1.01962 1.07806 1.24787 0.90100 0.88764 0.88919 0.79412 0.76650 0.90893 0.91014 0.87135 0.86492 0.94198 0.93449 0.89202 0.77506 0.91905 0.94874 0.90457 0.90078 0.91158 0.79287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.25 11.44 59.85 0.68 0.94 16 2 N -0.37 -2.59 3.98 -67.59 -0.27 -2.86 16 3 C 0.13 0.98 11.30 -16.56 -0.19 0.79 16 4 C -0.29 -2.70 6.13 -105.06 -0.64 -3.34 16 5 C 0.59 6.62 7.81 -12.52 -0.10 6.52 16 6 O -0.55 -8.08 16.90 5.28 0.09 -7.99 16 7 N -0.72 -6.76 5.54 -62.56 -0.35 -7.11 16 8 C 0.16 1.72 5.72 -5.19 -0.03 1.69 16 9 C -0.16 -1.77 5.26 -100.92 -0.53 -2.30 16 10 C -0.11 -1.37 9.50 -35.97 -0.34 -1.71 16 11 C 0.07 1.14 5.22 -5.28 -0.03 1.11 16 12 N -0.51 -8.23 4.46 -237.58 -1.06 -9.29 16 13 C 0.04 0.78 5.44 -4.98 -0.03 0.75 16 14 C 0.44 10.27 7.54 -10.99 -0.08 10.19 16 15 O -0.58 -15.28 13.88 5.55 0.08 -15.21 16 16 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 17 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 18 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 21 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C 0.05 0.60 5.59 -3.61 -0.02 0.58 16 26 C -0.07 -0.76 6.04 -28.04 -0.17 -0.93 16 27 C 0.08 0.67 11.50 -16.98 -0.20 0.47 16 28 N -0.30 -2.73 12.50 30.86 0.39 -2.35 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 32 H 0.19 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.40 2.88 7.42 -40.82 -0.30 2.58 16 34 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 35 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 36 H 0.11 1.30 7.81 -52.49 -0.41 0.89 16 37 H 0.12 2.26 5.98 -51.93 -0.31 1.95 16 38 H 0.04 0.59 8.06 -51.93 -0.42 0.17 16 39 H 0.05 0.75 8.06 -51.93 -0.42 0.33 16 40 H 0.09 1.41 7.94 -51.93 -0.41 1.00 16 41 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16 44 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.19 0.97 7.50 -52.48 -0.39 0.57 16 LS Contribution 397.00 15.07 5.98 5.98 Total: -1.00 -35.73 397.00 -8.10 -43.83 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.70 Total: 9.98 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -1.91 Total: 6.86 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.62 Total: -59.41 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.17 Total: -23.19 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.73 -8.10 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284881359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.051 kcal (2) G-P(sol) polarization free energy of solvation -35.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds