Wall clock time and date at job start Wed Apr 1 2020 05:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34262 * 125.75275 * 2 1 4 4 C 1.38046 * 107.41402 * 180.02562 * 3 2 1 5 5 C 1.47430 * 126.41388 * 179.97438 * 4 3 2 6 6 O 1.21595 * 120.00030 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99539 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99305 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46784 * 180.02562 * 8 7 5 10 10 C 1.29823 * 118.55903 * 94.99514 * 9 8 7 11 11 C 1.50140 * 123.28749 * 180.39016 * 10 9 8 12 12 N 1.46846 * 110.27590 * 342.93553 * 11 10 9 13 13 C 1.46899 * 111.00302 * 174.31282 * 12 11 10 14 14 C 1.50698 * 109.46987 * 66.03980 * 13 12 11 15 15 O 1.21293 * 120.00006 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99538 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99773 * 179.72591 * 16 14 13 18 18 H 1.08002 * 119.99671 * 0.27660 * 17 16 14 19 19 C 1.38950 * 120.00030 * 180.27703 * 17 16 14 20 20 N 1.31414 * 119.99926 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99969 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47425 * 90.00231 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00087 * 21 19 17 24 24 H 1.48505 * 109.47256 * 330.00093 * 21 19 17 25 25 C 1.47239 * 110.20601 * 50.91850 * 12 11 10 26 26 C 1.50311 * 118.54939 * 275.02136 * 9 8 7 27 27 C 1.41292 * 107.16788 * 0.24147 * 4 3 2 28 28 N 1.30447 * 108.02700 * 359.59118 * 27 4 3 29 29 H 1.08996 * 109.46798 * 89.99246 * 1 2 3 30 30 H 1.08997 * 109.47401 * 209.99945 * 1 2 3 31 31 H 1.09004 * 109.46546 * 329.99845 * 1 2 3 32 32 H 1.07998 * 126.29312 * 359.97438 * 3 2 1 33 33 H 0.96995 * 120.00499 * 0.02562 * 7 5 4 34 34 H 1.08995 * 109.47150 * 60.00098 * 8 7 5 35 35 H 1.09003 * 109.47146 * 299.99438 * 8 7 5 36 36 H 1.08001 * 118.35167 * 0.37934 * 10 9 8 37 37 H 1.08998 * 109.34082 * 222.68723 * 11 10 9 38 38 H 1.09003 * 109.33334 * 103.17518 * 11 10 9 39 39 H 1.09003 * 109.46477 * 306.04469 * 13 12 11 40 40 H 1.08993 * 109.47002 * 186.04796 * 13 12 11 41 41 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 42 42 H 0.96999 * 119.99863 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.63934 * 50.89479 * 25 12 11 44 44 H 1.08999 * 109.63492 * 171.50188 * 25 12 11 45 45 H 1.09006 * 109.42858 * 283.57665 * 26 9 8 46 46 H 1.08998 * 109.43146 * 43.42197 * 26 9 8 47 47 H 1.08008 * 125.98307 * 179.73764 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2496 1.0896 0.0000 4 6 3.5599 0.6553 -0.0006 5 6 4.7639 1.5061 -0.0013 6 8 4.6527 2.7169 -0.0019 7 7 5.9878 0.9417 -0.0013 8 6 7.1842 1.7872 -0.0015 9 6 8.4145 0.9167 -0.0021 10 6 8.9781 0.6396 -1.1383 11 6 10.2008 -0.2228 -1.2629 12 7 10.8699 -0.3482 0.0382 13 6 11.9900 -1.2957 -0.0349 14 6 13.0611 -0.7386 -0.9368 15 8 12.9068 0.3418 -1.4662 16 7 14.1910 -1.4404 -1.1543 17 6 15.1631 -0.9361 -1.9792 18 1 15.0253 0.0255 -2.4512 19 6 16.3255 -1.6622 -2.2081 20 7 16.4929 -2.8325 -1.6341 21 14 17.6502 -0.9749 -3.3314 22 1 18.6073 -0.1682 -2.5325 23 1 18.3730 -2.0942 -3.9871 24 1 17.0234 -0.1157 -4.3680 25 6 9.9019 -0.7540 1.0708 26 6 8.9345 0.4072 1.3129 27 6 3.5310 -0.7574 -0.0066 28 7 2.2826 -1.1357 -0.0006 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 1.9166 2.1170 -0.0004 33 1 6.0765 -0.0242 -0.0012 34 1 7.1845 2.4166 0.8884 35 1 7.1844 2.4164 -0.8916 36 1 8.5456 1.0498 -2.0389 37 1 10.8877 0.2263 -1.9802 38 1 9.9100 -1.2122 -1.6160 39 1 11.6364 -2.2460 -0.4349 40 1 12.3999 -1.4514 0.9629 41 1 14.3147 -2.3042 -0.7307 42 1 17.3045 -3.3392 -1.7936 43 1 9.3465 -1.6275 0.7293 44 1 10.4296 -0.9902 1.9949 45 1 9.4561 1.2110 1.8325 46 1 8.1002 0.0629 1.9239 47 1 4.3919 -1.4097 -0.0126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284881359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:23 Heat of formation + Delta-G solvation = 5.608804 kcal Electronic energy + Delta-G solvation = -28900.047191 eV Core-core repulsion = 24697.903284 eV Total energy + Delta-G solvation = -4202.143907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -42.34149 -40.78969 -40.18695 -39.20233 -36.53236 -35.82781 -34.53847 -33.83613 -33.21221 -31.74783 -31.43080 -29.78604 -28.19023 -27.14967 -25.76654 -24.65829 -23.71240 -22.85862 -21.92389 -21.14975 -21.02471 -19.86181 -19.26604 -18.38211 -17.75497 -17.16086 -16.92598 -16.72977 -16.60353 -16.51837 -16.12954 -15.79165 -15.65041 -15.48197 -15.37467 -15.26344 -14.69623 -14.55625 -14.13275 -13.88773 -13.79270 -13.69831 -13.49135 -13.47418 -13.44132 -13.21276 -12.94306 -12.87655 -12.46833 -12.39775 -12.14243 -12.11294 -12.03346 -11.44610 -11.40965 -11.01440 -10.60114 -10.24925 -10.16209 -9.98299 -9.84623 -9.63939 -9.14313 -8.44403 -5.92576 0.53332 1.05596 1.15277 1.39034 1.42750 1.47553 1.55066 2.08901 2.30147 2.47412 2.51144 2.81379 3.22716 3.42346 3.53579 3.63336 3.80768 3.86049 4.11038 4.16413 4.21947 4.31485 4.41034 4.42219 4.45651 4.47682 4.55968 4.57195 4.64234 4.66001 4.69992 4.70720 4.78323 4.86581 5.00402 5.12352 5.23801 5.37462 5.41856 5.44302 5.48090 5.86221 5.90325 5.99188 6.17300 6.25308 6.48290 6.64036 6.65684 7.16130 7.30255 7.60077 8.16454 8.72956 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027575 B = 0.001566 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.178158 B =17880.186316 C =18096.043795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.362 5.362 3 C 0.132 3.868 4 C -0.318 4.318 5 C 0.595 3.405 6 O -0.594 6.594 7 N -0.708 5.708 8 C 0.167 3.833 9 C -0.133 4.133 10 C -0.125 4.125 11 C 0.078 3.922 12 N -0.531 5.531 13 C 0.057 3.943 14 C 0.440 3.560 15 O -0.615 6.615 16 N -0.575 5.575 17 C -0.332 4.332 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.274 1.274 25 C 0.050 3.950 26 C -0.071 4.071 27 C 0.086 3.914 28 N -0.328 5.328 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.208 0.792 33 H 0.412 0.588 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.051 0.949 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.101 0.899 47 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.157 0.369 7.405 32.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.140 5.140 3 C -0.022 4.022 4 C -0.333 4.333 5 C 0.384 3.616 6 O -0.476 6.476 7 N -0.359 5.359 8 C 0.044 3.956 9 C -0.134 4.134 10 C -0.145 4.145 11 C -0.049 4.049 12 N -0.256 5.256 13 C -0.074 4.074 14 C 0.228 3.772 15 O -0.501 6.501 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.197 1.197 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.077 4.077 26 C -0.108 4.108 27 C -0.101 4.101 28 N -0.148 5.148 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.137 0.863 32 H 0.224 0.776 33 H 0.249 0.751 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.093 0.907 46 H 0.119 0.881 47 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -31.972 1.236 7.187 32.793 hybrid contribution 1.462 -0.578 -0.826 1.776 sum -30.510 0.658 6.360 31.173 Atomic orbital electron populations 1.22398 0.71015 1.06650 1.05315 1.48797 1.08639 1.03141 1.53465 1.23355 0.89937 0.94731 0.94145 1.20242 0.93365 0.93929 1.25730 1.17485 0.82937 0.86479 0.74709 1.90752 1.87467 1.15946 1.53443 1.45697 1.04280 1.10976 1.74991 1.20159 0.81344 0.91824 1.02238 1.20919 0.96574 1.00277 0.95595 1.22209 0.95246 0.98579 0.98433 1.21025 0.93974 0.98001 0.91911 1.61976 1.09050 1.47993 1.06625 1.21778 0.91169 0.93974 1.00466 1.20840 0.84380 0.86282 0.85702 1.90467 1.80413 1.24053 1.55175 1.41932 1.15839 1.20334 1.43141 1.19648 0.97516 1.04588 1.24397 0.90427 1.25987 1.00028 0.95800 0.99338 1.69669 1.28966 1.12981 1.44529 0.84958 0.77653 0.77864 0.78046 1.19747 1.19564 1.19893 1.22356 0.93290 0.96836 0.95261 1.20473 0.98300 0.97755 0.94238 1.24462 0.95884 0.93718 0.96048 1.77163 1.02593 1.09153 1.25915 0.88930 0.88361 0.86290 0.77577 0.75145 0.90972 0.92118 0.86637 0.91056 0.93439 0.91311 0.86955 0.77021 0.91374 0.93099 0.88989 0.90665 0.88074 0.77027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.27 11.44 127.77 1.46 1.73 16 2 N -0.36 -4.51 3.98 -367.76 -1.46 -5.97 16 3 C 0.13 1.81 11.30 84.28 0.95 2.76 16 4 C -0.32 -5.44 6.13 -20.15 -0.12 -5.56 16 5 C 0.59 12.69 7.81 86.66 0.68 13.37 16 6 O -0.59 -17.20 16.90 -4.01 -0.07 -17.27 16 7 N -0.71 -12.19 5.54 -470.10 -2.60 -14.79 16 8 C 0.17 3.39 5.72 85.63 0.49 3.88 16 9 C -0.13 -2.81 5.26 -15.40 -0.08 -2.89 16 10 C -0.13 -3.17 9.50 26.68 0.25 -2.91 16 11 C 0.08 2.47 5.22 85.39 0.45 2.91 16 12 N -0.53 -16.62 4.46 -905.56 -4.04 -20.66 16 13 C 0.06 1.92 5.44 85.56 0.47 2.39 16 14 C 0.44 20.81 7.54 87.66 0.66 21.47 16 15 O -0.62 -33.89 13.88 -3.07 -0.04 -33.94 16 16 N -0.57 -29.36 5.29 -306.98 -1.62 -30.98 16 17 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 18 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 19 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 20 N -0.92 -49.54 13.05 21.66 0.28 -49.26 16 21 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 C 0.05 1.06 5.59 86.26 0.48 1.54 16 26 C -0.07 -1.33 6.04 29.75 0.18 -1.15 16 27 C 0.09 1.25 11.50 85.65 0.99 2.24 16 28 N -0.33 -5.52 12.50 -56.27 -0.70 -6.22 16 29 H 0.09 0.10 8.14 -2.39 -0.02 0.09 16 30 H 0.10 0.25 8.14 -2.39 -0.02 0.24 16 31 H 0.12 -0.26 8.14 -2.38 -0.02 -0.27 16 32 H 0.21 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.41 4.98 7.42 -92.71 -0.69 4.30 16 34 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 35 H 0.06 1.39 7.85 -2.39 -0.02 1.37 16 36 H 0.12 2.74 7.81 -2.91 -0.02 2.72 16 37 H 0.07 2.91 5.98 -2.39 -0.01 2.90 16 38 H 0.05 1.38 8.06 -2.39 -0.02 1.36 16 39 H 0.07 2.04 8.06 -2.39 -0.02 2.02 16 40 H 0.11 3.28 7.94 -2.39 -0.02 3.26 16 41 H 0.40 19.14 7.90 -92.71 -0.73 18.40 16 42 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 43 H 0.05 0.94 8.08 -2.39 -0.02 0.92 16 44 H 0.09 1.72 7.92 -2.39 -0.02 1.70 16 45 H 0.07 1.57 8.14 -2.38 -0.02 1.56 16 46 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.21 1.68 7.50 -2.91 -0.02 1.66 16 Total: -1.00 -79.65 397.00 -0.51 -80.16 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.40 Total: 32.21 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 8.13 Total: 21.57 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -10.15 Total: -127.88 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -0.11 Total: -51.20 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -79.65 -0.51 -80.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284881359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.769 kcal (2) G-P(sol) polarization free energy of solvation -79.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds