Wall clock time and date at job start Wed Apr 1 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 120.00512 * 2 1 4 4 H 1.07999 * 120.00309 * 202.66845 * 3 2 1 5 5 C 1.38820 * 119.99655 * 22.66828 * 3 2 1 6 6 N 1.31610 * 120.00062 * 11.82933 * 5 3 2 7 7 Si 1.86798 * 119.99633 * 191.83241 * 5 3 2 8 8 H 1.48494 * 109.47537 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47100 * 120.00114 * 7 5 3 10 10 H 1.48502 * 109.46982 * 239.99440 * 7 5 3 11 11 C 1.46498 * 119.99684 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47455 * 270.00245 * 11 2 1 13 13 O 1.42893 * 109.47246 * 64.99868 * 12 11 2 14 14 C 1.42900 * 114.00179 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47055 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47024 * 64.99949 * 15 14 13 17 17 C 1.46500 * 120.00064 * 269.99534 * 16 15 14 18 18 C 1.34775 * 119.99782 * 90.00560 * 16 15 14 19 19 O 1.21712 * 120.00420 * 5.06854 * 18 16 15 20 20 C 1.46579 * 119.99685 * 185.07773 * 18 16 15 21 21 C 1.40648 * 126.53984 * 321.10700 * 20 18 16 22 22 N 1.30699 * 108.72777 * 180.02562 * 21 20 18 23 23 N 1.39913 * 109.51916 * 359.97438 * 22 21 20 24 24 C 1.36308 * 132.15715 * 180.36338 * 23 22 21 25 25 C 1.35757 * 119.15308 * 180.14679 * 24 23 22 26 26 C 1.39967 * 119.35683 * 359.45797 * 25 24 23 27 27 N 1.31499 * 120.10322 * 0.27653 * 26 25 24 28 28 C 1.33388 * 120.85443 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47191 * 275.17266 * 1 2 3 30 30 H 1.09004 * 109.46541 * 35.17360 * 1 2 3 31 31 H 1.09002 * 109.47364 * 155.16937 * 1 2 3 32 32 H 0.97005 * 120.00118 * 180.02562 * 6 5 3 33 33 H 1.09006 * 109.46908 * 149.99940 * 11 2 1 34 34 H 1.09001 * 109.47289 * 30.00388 * 11 2 1 35 35 H 1.09001 * 109.46541 * 304.99900 * 12 11 2 36 36 H 1.09000 * 109.47410 * 185.00461 * 12 11 2 37 37 H 1.09004 * 109.47177 * 60.00194 * 14 13 12 38 38 H 1.08994 * 109.47255 * 299.99962 * 14 13 12 39 39 H 1.08998 * 109.47051 * 304.99525 * 15 14 13 40 40 H 1.09001 * 109.46905 * 185.00092 * 15 14 13 41 41 H 1.09003 * 109.47419 * 264.95568 * 17 16 15 42 42 H 1.08999 * 109.46705 * 24.95085 * 17 16 15 43 43 H 1.08997 * 109.46710 * 144.94818 * 17 16 15 44 44 H 1.07997 * 125.63712 * 0.02562 * 21 20 18 45 45 H 1.07995 * 120.42762 * 359.90511 * 24 23 22 46 46 H 1.08005 * 120.32414 * 179.72774 * 25 24 23 47 47 H 1.07990 * 119.95011 * 180.29860 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1672 1.2219 -0.3605 5 6 1.5361 2.3416 0.4633 6 7 0.3944 2.2652 1.1135 7 14 2.3310 4.0053 0.1639 8 1 3.6003 3.8201 -0.5841 9 1 1.4092 4.8589 -0.6281 10 1 2.6153 4.6597 1.4663 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4432 13 8 1.2060 -1.9927 2.0822 14 6 1.3323 -2.4151 3.4415 15 6 -0.0568 -2.6891 4.0216 16 7 -0.6648 -3.8215 3.3187 17 6 -1.4789 -3.5899 2.1230 18 6 -0.4753 -5.0764 3.7723 19 8 0.1226 -5.2626 4.8160 20 6 -0.9891 -6.2171 3.0086 21 6 -2.2155 -6.2817 2.3229 22 7 -2.3219 -7.4579 1.7632 23 7 -1.1820 -8.2169 2.0499 24 6 -0.8130 -9.4815 1.6996 25 6 0.3771 -9.9678 2.1357 26 6 1.2021 -9.1575 2.9242 27 7 0.8213 -7.9395 3.2415 28 6 -0.3489 -7.4571 2.8207 29 1 -0.3633 0.0926 1.0234 30 1 -0.3632 0.8401 -0.5920 31 1 -0.3634 -0.9327 -0.4316 32 1 -0.0346 3.0729 1.4370 33 1 3.1499 -1.1387 -0.5134 34 1 1.6084 -2.0286 -0.5130 35 1 2.9642 -0.9124 1.9819 36 1 3.0731 -2.6059 1.4449 37 1 1.8206 -1.6319 4.0215 38 1 1.9298 -3.3256 3.4851 39 1 -0.6831 -1.8057 3.8974 40 1 0.0324 -2.9250 5.0820 41 1 -2.5306 -3.5361 2.4042 42 1 -1.1793 -2.6518 1.6557 43 1 -1.3323 -4.4094 1.4194 44 1 -2.9481 -5.4901 2.2680 45 1 -1.4607 -10.0901 1.0862 46 1 0.6863 -10.9688 1.8731 47 1 2.1529 -9.5330 3.2723 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316763931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:10 Heat of formation + Delta-G solvation = 83.710961 kcal Electronic energy + Delta-G solvation = -30752.016302 eV Core-core repulsion = 26553.259159 eV Total energy + Delta-G solvation = -4198.757144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.78319 -39.61675 -38.30627 -37.33869 -35.49702 -34.82939 -34.41156 -31.70226 -31.43598 -30.51065 -29.13069 -27.88807 -26.37325 -25.68207 -25.27542 -24.39851 -22.97423 -22.77270 -21.93270 -20.25909 -19.61367 -18.35738 -17.75136 -17.23043 -16.72920 -16.56597 -16.11025 -16.04871 -15.55003 -15.29095 -14.96467 -14.62420 -14.52487 -14.19152 -13.68777 -13.59519 -13.41543 -13.24559 -13.03470 -12.90049 -12.66555 -12.21196 -12.17344 -11.86391 -11.79773 -11.60360 -11.31593 -11.25663 -10.88241 -10.78726 -10.68266 -10.44463 -10.20955 -10.01960 -9.99446 -9.85053 -9.78166 -9.69794 -8.82171 -8.48639 -8.44930 -8.24663 -6.62747 -5.62245 -3.07890 0.03526 0.40653 1.56777 1.94273 2.79631 3.04408 3.41638 3.43311 3.44858 3.48839 3.50605 3.73039 3.91838 4.39226 4.40406 4.57723 4.57991 4.75388 4.84205 5.01835 5.09905 5.37504 5.43207 5.49859 5.50565 5.56026 5.63306 5.67991 5.80210 5.87351 5.93103 6.03222 6.07954 6.11781 6.21873 6.28312 6.34612 6.63493 6.73185 6.84961 6.95157 6.96520 7.23841 7.52830 7.57839 7.86540 7.95988 8.01298 8.39451 8.49646 9.34475 9.98232 10.48782 11.41707 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019296 B = 0.002345 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.762717 B =11938.425334 C =12027.146171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.596 5.596 3 C -0.253 4.253 4 H 0.066 0.934 5 C 0.001 3.999 6 N -0.903 5.903 7 Si 0.901 3.099 8 H -0.280 1.280 9 H -0.290 1.290 10 H -0.292 1.292 11 C 0.154 3.846 12 C 0.045 3.955 13 O -0.366 6.366 14 C 0.048 3.952 15 C 0.124 3.876 16 N -0.600 5.600 17 C 0.077 3.923 18 C 0.598 3.402 19 O -0.537 6.537 20 C -0.276 4.276 21 C 0.128 3.872 22 N -0.312 5.312 23 N -0.308 5.308 24 C 0.166 3.834 25 C -0.225 4.225 26 C 0.184 3.816 27 N -0.448 5.448 28 C 0.311 3.689 29 H 0.034 0.966 30 H 0.034 0.966 31 H -0.007 1.007 32 H 0.249 0.751 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.021 0.979 37 H 0.053 0.947 38 H 0.040 0.960 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.208 0.792 45 H 0.183 0.817 46 H 0.171 0.829 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.839 -25.999 2.024 26.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.319 5.319 3 C -0.383 4.383 4 H 0.084 0.916 5 C -0.197 4.197 6 N -0.548 5.548 7 Si 0.731 3.269 8 H -0.205 1.205 9 H -0.217 1.217 10 H -0.219 1.219 11 C 0.026 3.974 12 C -0.035 4.035 13 O -0.285 6.285 14 C -0.030 4.030 15 C 0.001 3.999 16 N -0.332 5.332 17 C -0.066 4.066 18 C 0.386 3.614 19 O -0.415 6.415 20 C -0.292 4.292 21 C -0.053 4.053 22 N -0.134 5.134 23 N -0.077 5.077 24 C 0.031 3.969 25 C -0.249 4.249 26 C 0.001 3.999 27 N -0.158 5.158 28 C 0.080 3.920 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.225 0.775 45 H 0.200 0.800 46 H 0.189 0.811 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.266 -25.870 2.310 26.321 hybrid contribution 0.709 0.865 -0.004 1.118 sum -3.557 -25.005 2.306 25.362 Atomic orbital electron populations 1.20689 0.82271 0.94537 0.99450 1.43882 1.02120 1.00213 1.85666 1.19241 0.98104 0.85618 1.35359 0.91611 1.25011 0.97849 0.98306 0.98523 1.70092 1.18280 1.26621 1.39814 0.86240 0.78599 0.84681 0.77346 1.20471 1.21726 1.21872 1.20872 0.96273 0.88753 0.91490 1.23421 0.85432 0.96656 0.97959 1.87915 1.30082 1.87278 1.23224 1.22777 0.96886 0.97919 0.85415 1.21540 0.93576 0.88304 0.96447 1.47521 1.51289 1.05550 1.28857 1.22022 0.93621 1.04167 0.86810 1.16815 0.78989 0.81587 0.84033 1.90792 1.42555 1.85067 1.23061 1.19379 0.98934 0.95016 1.15897 1.24361 0.95806 0.94537 0.90571 1.77616 1.02316 1.05477 1.27945 1.47016 1.15404 1.11288 1.34017 1.22146 0.96452 0.82536 0.95815 1.21931 0.94811 1.04000 1.04134 1.23605 0.98988 0.87778 0.89522 1.68277 1.11791 1.14607 1.21147 1.20317 0.87679 0.92036 0.91985 0.94773 0.94738 0.98839 0.94025 0.92592 0.94007 0.93520 0.96110 0.92934 0.94170 0.89146 0.88818 0.93002 0.88767 0.91692 0.77542 0.79970 0.81144 0.79924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.41 8.61 59.85 0.52 4.92 16 2 N -0.60 -15.31 2.89 -181.11 -0.52 -15.83 16 3 C -0.25 -7.06 9.67 -15.06 -0.15 -7.20 16 4 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 5 C 0.00 0.04 5.13 -17.43 -0.09 -0.05 16 6 N -0.90 -26.52 10.62 55.49 0.59 -25.93 16 7 Si 0.90 22.12 29.57 -169.99 -5.03 17.09 16 8 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 C 0.15 3.28 6.11 -4.04 -0.02 3.26 16 12 C 0.04 0.90 6.28 37.16 0.23 1.14 16 13 O -0.37 -7.33 8.82 -35.23 -0.31 -7.64 16 14 C 0.05 0.84 6.28 37.16 0.23 1.08 16 15 C 0.12 1.91 5.83 -4.04 -0.02 1.89 16 16 N -0.60 -8.95 2.84 -183.16 -0.52 -9.47 16 17 C 0.08 0.96 8.83 59.85 0.53 1.49 16 18 C 0.60 9.78 7.56 -12.90 -0.10 9.68 16 19 O -0.54 -10.47 16.64 5.18 0.09 -10.39 16 20 C -0.28 -3.94 5.36 -104.65 -0.56 -4.50 16 21 C 0.13 1.45 9.67 -17.12 -0.17 1.29 16 22 N -0.31 -3.62 12.58 30.76 0.39 -3.24 16 23 N -0.31 -3.38 3.86 -11.97 -0.05 -3.43 16 24 C 0.17 1.04 11.29 -16.45 -0.19 0.86 16 25 C -0.22 -0.97 10.05 -39.82 -0.40 -1.37 16 26 C 0.18 1.30 11.28 -17.05 -0.19 1.11 16 27 N -0.45 -5.72 10.47 -12.00 -0.13 -5.84 16 28 C 0.31 4.23 7.87 -155.83 -1.23 3.01 16 29 H 0.03 0.93 7.35 -51.93 -0.38 0.54 16 30 H 0.03 0.93 7.29 -51.93 -0.38 0.55 16 31 H -0.01 -0.16 7.83 -51.93 -0.41 -0.56 16 32 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 34 H 0.04 0.84 7.86 -51.93 -0.41 0.43 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 40 H 0.09 1.41 7.36 -51.93 -0.38 1.02 16 41 H 0.05 0.50 7.35 -51.93 -0.38 0.12 16 42 H 0.09 1.39 7.22 -51.93 -0.37 1.02 16 43 H 0.06 0.77 5.90 -51.93 -0.31 0.47 16 44 H 0.21 1.67 6.37 -52.49 -0.33 1.33 16 45 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 46 H 0.17 0.00 8.06 -52.48 -0.42 -0.43 16 47 H 0.18 0.60 8.06 -52.49 -0.42 0.17 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -38.29 392.96 -7.87 -46.15 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -6.70 Total: -4.00 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: -1.60 Total: 16.59 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -0.24 Total: -63.74 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.22 Total: -18.02 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.29 -7.87 -46.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316763931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.866 kcal (2) G-P(sol) polarization free energy of solvation -38.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds