Wall clock time and date at job start Wed Apr 1 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 120.00512 * 2 1 4 4 H 1.07999 * 120.00309 * 202.66845 * 3 2 1 5 5 C 1.38820 * 119.99655 * 22.66828 * 3 2 1 6 6 N 1.31610 * 120.00062 * 11.82933 * 5 3 2 7 7 Si 1.86798 * 119.99633 * 191.83241 * 5 3 2 8 8 H 1.48494 * 109.47537 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47100 * 120.00114 * 7 5 3 10 10 H 1.48502 * 109.46982 * 239.99440 * 7 5 3 11 11 C 1.46498 * 119.99684 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47455 * 270.00245 * 11 2 1 13 13 O 1.42893 * 109.47246 * 64.99868 * 12 11 2 14 14 C 1.42900 * 114.00179 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47055 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47024 * 64.99949 * 15 14 13 17 17 C 1.46500 * 120.00064 * 269.99534 * 16 15 14 18 18 C 1.34775 * 119.99782 * 90.00560 * 16 15 14 19 19 O 1.21712 * 120.00420 * 5.06854 * 18 16 15 20 20 C 1.46579 * 119.99685 * 185.07773 * 18 16 15 21 21 C 1.40648 * 126.53984 * 321.10700 * 20 18 16 22 22 N 1.30699 * 108.72777 * 180.02562 * 21 20 18 23 23 N 1.39913 * 109.51916 * 359.97438 * 22 21 20 24 24 C 1.36308 * 132.15715 * 180.36338 * 23 22 21 25 25 C 1.35757 * 119.15308 * 180.14679 * 24 23 22 26 26 C 1.39967 * 119.35683 * 359.45797 * 25 24 23 27 27 N 1.31499 * 120.10322 * 0.27653 * 26 25 24 28 28 C 1.33388 * 120.85443 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47191 * 275.17266 * 1 2 3 30 30 H 1.09004 * 109.46541 * 35.17360 * 1 2 3 31 31 H 1.09002 * 109.47364 * 155.16937 * 1 2 3 32 32 H 0.97005 * 120.00118 * 180.02562 * 6 5 3 33 33 H 1.09006 * 109.46908 * 149.99940 * 11 2 1 34 34 H 1.09001 * 109.47289 * 30.00388 * 11 2 1 35 35 H 1.09001 * 109.46541 * 304.99900 * 12 11 2 36 36 H 1.09000 * 109.47410 * 185.00461 * 12 11 2 37 37 H 1.09004 * 109.47177 * 60.00194 * 14 13 12 38 38 H 1.08994 * 109.47255 * 299.99962 * 14 13 12 39 39 H 1.08998 * 109.47051 * 304.99525 * 15 14 13 40 40 H 1.09001 * 109.46905 * 185.00092 * 15 14 13 41 41 H 1.09003 * 109.47419 * 264.95568 * 17 16 15 42 42 H 1.08999 * 109.46705 * 24.95085 * 17 16 15 43 43 H 1.08997 * 109.46710 * 144.94818 * 17 16 15 44 44 H 1.07997 * 125.63712 * 0.02562 * 21 20 18 45 45 H 1.07995 * 120.42762 * 359.90511 * 24 23 22 46 46 H 1.08005 * 120.32414 * 179.72774 * 25 24 23 47 47 H 1.07990 * 119.95011 * 180.29860 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1672 1.2219 -0.3605 5 6 1.5361 2.3416 0.4633 6 7 0.3944 2.2652 1.1135 7 14 2.3310 4.0053 0.1639 8 1 3.6003 3.8201 -0.5841 9 1 1.4092 4.8589 -0.6281 10 1 2.6153 4.6597 1.4663 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4432 13 8 1.2060 -1.9927 2.0822 14 6 1.3323 -2.4151 3.4415 15 6 -0.0568 -2.6891 4.0216 16 7 -0.6648 -3.8215 3.3187 17 6 -1.4789 -3.5899 2.1230 18 6 -0.4753 -5.0764 3.7723 19 8 0.1226 -5.2626 4.8160 20 6 -0.9891 -6.2171 3.0086 21 6 -2.2155 -6.2817 2.3229 22 7 -2.3219 -7.4579 1.7632 23 7 -1.1820 -8.2169 2.0499 24 6 -0.8130 -9.4815 1.6996 25 6 0.3771 -9.9678 2.1357 26 6 1.2021 -9.1575 2.9242 27 7 0.8213 -7.9395 3.2415 28 6 -0.3489 -7.4571 2.8207 29 1 -0.3633 0.0926 1.0234 30 1 -0.3632 0.8401 -0.5920 31 1 -0.3634 -0.9327 -0.4316 32 1 -0.0346 3.0729 1.4370 33 1 3.1499 -1.1387 -0.5134 34 1 1.6084 -2.0286 -0.5130 35 1 2.9642 -0.9124 1.9819 36 1 3.0731 -2.6059 1.4449 37 1 1.8206 -1.6319 4.0215 38 1 1.9298 -3.3256 3.4851 39 1 -0.6831 -1.8057 3.8974 40 1 0.0324 -2.9250 5.0820 41 1 -2.5306 -3.5361 2.4042 42 1 -1.1793 -2.6518 1.6557 43 1 -1.3323 -4.4094 1.4194 44 1 -2.9481 -5.4901 2.2680 45 1 -1.4607 -10.0901 1.0862 46 1 0.6863 -10.9688 1.8731 47 1 2.1529 -9.5330 3.2723 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316763931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:06 Heat of formation + Delta-G solvation = 57.261776 kcal Electronic energy + Delta-G solvation = -30753.163225 eV Core-core repulsion = 26553.259159 eV Total energy + Delta-G solvation = -4199.904066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.51704 -40.75444 -39.12576 -38.84922 -37.19880 -36.29256 -35.12107 -33.46360 -32.30685 -31.73967 -30.30886 -29.45293 -27.78128 -27.48223 -25.89701 -25.37766 -24.77587 -23.77688 -22.94468 -22.12207 -20.60008 -19.19923 -18.75159 -18.49121 -18.07880 -17.51639 -17.31645 -17.22629 -16.86542 -16.56094 -16.36317 -16.20058 -15.34653 -15.23881 -15.17843 -15.11271 -14.81555 -14.37076 -14.06954 -13.91518 -13.79782 -13.66403 -13.50639 -13.17208 -13.00774 -12.89272 -12.71731 -12.65574 -12.61229 -12.43667 -12.32778 -12.17624 -11.96792 -11.76409 -11.69581 -10.97302 -10.85315 -10.67002 -10.60408 -10.39455 -9.65722 -9.08896 -8.70624 -7.75474 -5.23441 -0.57223 -0.21721 0.91504 1.06343 1.47287 1.48496 1.58463 1.84146 2.14222 2.47433 2.54115 2.82040 2.90960 2.99128 3.36761 3.53005 3.77118 3.80408 3.87513 4.04839 4.11005 4.16369 4.26120 4.34377 4.41932 4.44972 4.51736 4.54910 4.57668 4.62723 4.65846 4.70024 4.84442 4.94083 4.99566 5.00062 5.07626 5.09833 5.16080 5.41984 5.42513 5.55505 5.69617 5.89433 6.18954 6.36594 6.39668 6.48712 6.59610 7.21650 7.22232 7.94550 8.39814 9.27073 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019296 B = 0.002345 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.762717 B =11938.425334 C =12027.146171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.194 3.806 2 N -0.612 5.612 3 C -0.262 4.262 4 H 0.070 0.930 5 C -0.053 4.053 6 N -0.932 5.932 7 Si 0.965 3.035 8 H -0.267 1.267 9 H -0.292 1.292 10 H -0.295 1.295 11 C 0.152 3.848 12 C 0.052 3.948 13 O -0.378 6.378 14 C 0.053 3.947 15 C 0.129 3.871 16 N -0.600 5.600 17 C 0.080 3.920 18 C 0.598 3.402 19 O -0.583 6.583 20 C -0.324 4.324 21 C 0.138 3.862 22 N -0.326 5.326 23 N -0.312 5.312 24 C 0.151 3.849 25 C -0.198 4.198 26 C 0.189 3.811 27 N -0.510 5.510 28 C 0.300 3.700 29 H 0.008 0.992 30 H 0.007 0.993 31 H 0.022 0.978 32 H 0.245 0.755 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.022 0.978 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.034 0.966 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.231 0.769 45 H 0.222 0.778 46 H 0.226 0.774 47 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.414 -28.862 0.560 29.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.335 5.335 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.248 4.248 6 N -0.579 5.579 7 Si 0.794 3.206 8 H -0.192 1.192 9 H -0.219 1.219 10 H -0.222 1.222 11 C 0.025 3.975 12 C -0.027 4.027 13 O -0.298 6.298 14 C -0.025 4.025 15 C 0.006 3.994 16 N -0.331 5.331 17 C -0.062 4.062 18 C 0.388 3.612 19 O -0.464 6.464 20 C -0.341 4.341 21 C -0.043 4.043 22 N -0.148 5.148 23 N -0.080 5.080 24 C 0.017 3.983 25 C -0.220 4.220 26 C 0.010 3.990 27 N -0.223 5.223 28 C 0.066 3.934 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.247 0.753 45 H 0.238 0.762 46 H 0.243 0.757 47 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -3.824 -28.794 0.799 29.058 hybrid contribution 0.693 1.453 0.410 1.661 sum -3.131 -27.341 1.209 27.546 Atomic orbital electron populations 1.20382 0.82407 0.94743 0.97576 1.44102 1.02387 1.01211 1.85767 1.19564 0.98312 0.86701 1.34629 0.91248 1.25759 0.98617 1.01599 0.98853 1.70259 1.19585 1.27034 1.40982 0.85235 0.78072 0.80436 0.76877 1.19161 1.21856 1.22238 1.21035 0.96716 0.87350 0.92362 1.23221 0.85714 0.96927 0.96837 1.87900 1.30110 1.87353 1.24389 1.22809 0.98074 0.97320 0.84311 1.21430 0.92648 0.88807 0.96552 1.47586 1.51229 1.05079 1.29226 1.22093 0.94933 1.03096 0.86077 1.17158 0.78184 0.82278 0.83586 1.90738 1.44907 1.85729 1.25017 1.19289 1.00955 0.95220 1.18623 1.24628 0.95176 0.95032 0.89450 1.77519 1.03047 1.05684 1.28580 1.47241 1.14690 1.12419 1.33655 1.23161 0.97859 0.81210 0.96070 1.22560 0.92935 1.05367 1.01183 1.24470 1.00293 0.86306 0.87964 1.68307 1.12395 1.17616 1.23947 1.20437 0.88374 0.92335 0.92220 0.97321 0.97401 0.95958 0.94549 0.91314 0.92330 0.95988 0.93503 0.93245 0.94772 0.88950 0.88648 0.89816 0.90984 0.90961 0.75303 0.76176 0.75731 0.76458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.84 8.61 127.77 1.10 10.94 16 2 N -0.61 -31.34 2.89 -726.92 -2.10 -33.44 16 3 C -0.26 -14.57 9.67 84.04 0.81 -13.75 16 4 H 0.07 3.74 7.85 -2.91 -0.02 3.72 16 5 C -0.05 -3.02 5.13 84.87 0.44 -2.58 16 6 N -0.93 -55.83 10.62 21.65 0.23 -55.60 16 7 Si 0.96 45.81 29.57 68.60 2.03 47.84 16 8 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 9 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 11 C 0.15 6.32 6.11 86.38 0.53 6.84 16 12 C 0.05 2.09 6.28 71.98 0.45 2.54 16 13 O -0.38 -15.31 8.82 -148.98 -1.31 -16.63 16 14 C 0.05 1.90 6.28 71.98 0.45 2.36 16 15 C 0.13 4.13 5.83 86.38 0.50 4.64 16 16 N -0.60 -18.39 2.84 -851.61 -2.42 -20.81 16 17 C 0.08 2.00 8.83 127.77 1.13 3.13 16 18 C 0.60 20.36 7.56 86.42 0.65 21.01 16 19 O -0.58 -23.99 16.64 -4.39 -0.07 -24.06 16 20 C -0.32 -9.47 5.36 -19.89 -0.11 -9.58 16 21 C 0.14 3.09 9.67 85.45 0.83 3.91 16 22 N -0.33 -7.28 12.58 -56.58 -0.71 -7.99 16 23 N -0.31 -6.40 3.86 -191.79 -0.74 -7.14 16 24 C 0.15 1.38 11.29 83.42 0.94 2.33 16 25 C -0.20 -0.83 10.05 22.11 0.22 -0.61 16 26 C 0.19 2.18 11.28 85.16 0.96 3.14 16 27 N -0.51 -12.84 10.47 -191.88 -2.01 -14.85 16 28 C 0.30 8.16 7.87 133.98 1.05 9.21 16 29 H 0.01 0.47 7.35 -2.39 -0.02 0.46 16 30 H 0.01 0.40 7.29 -2.38 -0.02 0.39 16 31 H 0.02 0.97 7.83 -2.39 -0.02 0.95 16 32 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 33 H 0.07 2.67 8.03 -2.38 -0.02 2.65 16 34 H 0.06 2.24 7.86 -2.39 -0.02 2.22 16 35 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 2.91 8.07 -2.39 -0.02 2.89 16 40 H 0.10 3.02 7.36 -2.39 -0.02 3.01 16 41 H 0.08 1.53 7.35 -2.39 -0.02 1.51 16 42 H 0.07 2.14 7.22 -2.39 -0.02 2.12 16 43 H 0.07 1.70 5.90 -2.39 -0.01 1.69 16 44 H 0.23 3.50 6.37 -2.91 -0.02 3.48 16 45 H 0.22 0.14 8.06 -2.91 -0.02 0.11 16 46 H 0.23 -1.55 8.06 -2.91 -0.02 -1.57 16 47 H 0.22 0.65 8.06 -2.92 -0.02 0.62 16 Total: -1.00 -87.43 392.96 3.84 -83.59 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 0.98 Total: 5.56 kcal Atomic # 6 Polarization: 33.56 SS G_CDS: 9.96 Total: 43.53 kcal Atomic # 7 Polarization: -132.08 SS G_CDS: -7.75 Total: -139.83 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -1.39 Total: -40.69 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -87.43 3.84 -83.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316763931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.848 kcal (2) G-P(sol) polarization free energy of solvation -87.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds