Wall clock time and date at job start Wed Apr 1 2020 05:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34775 * 120.00296 * 2 1 4 4 O 1.21467 * 120.00232 * 182.09507 * 3 2 1 5 5 C 1.48542 * 119.99700 * 1.81418 * 3 2 1 6 6 N 1.32459 * 119.18383 * 352.19360 * 5 3 2 7 7 C 1.32111 * 120.76507 * 179.71835 * 6 5 3 8 8 C 1.38806 * 119.16670 * 0.53690 * 7 6 5 9 9 C 1.38804 * 118.49943 * 359.73662 * 8 7 6 10 10 N 1.32110 * 119.16976 * 359.97438 * 9 8 7 11 11 C 1.46504 * 119.99728 * 179.97438 * 2 1 3 12 12 C 1.53113 * 109.52208 * 59.87644 * 11 2 1 13 13 C 1.53049 * 109.27536 * 182.50115 * 12 11 2 14 14 N 1.46839 * 109.57558 * 59.08158 * 13 12 11 15 15 C 1.46904 * 111.00126 * 174.19290 * 14 13 12 16 16 C 1.50697 * 109.46876 * 294.21125 * 15 14 13 17 17 O 1.21290 * 120.00552 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99717 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99960 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99785 * 0.02562 * 19 18 16 21 21 C 1.38941 * 119.99875 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00018 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00100 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47097 * 90.00562 * 23 21 19 25 25 H 1.48500 * 109.46967 * 210.00174 * 23 21 19 26 26 H 1.48498 * 109.47377 * 330.00395 * 23 21 19 27 27 C 1.46851 * 111.20107 * 298.29518 * 14 13 12 28 28 C 1.53032 * 109.52458 * 61.73927 * 27 14 13 29 29 H 1.08999 * 109.47100 * 83.71564 * 1 2 3 30 30 H 1.09002 * 109.47359 * 203.72083 * 1 2 3 31 31 H 1.09000 * 109.47125 * 323.71476 * 1 2 3 32 32 H 1.08006 * 120.42089 * 180.27448 * 7 6 5 33 33 H 1.07992 * 120.75097 * 179.75231 * 8 7 6 34 34 H 1.08004 * 120.41167 * 180.02562 * 9 8 7 35 35 H 1.09008 * 109.51738 * 179.97438 * 11 2 1 36 36 H 1.08997 * 109.50749 * 302.37895 * 12 11 2 37 37 H 1.09000 * 109.50601 * 62.50069 * 12 11 2 38 38 H 1.09005 * 109.40966 * 299.06857 * 13 12 11 39 39 H 1.08998 * 109.45574 * 179.12716 * 13 12 11 40 40 H 1.09000 * 109.46622 * 54.21307 * 15 14 13 41 41 H 1.08996 * 109.46835 * 174.20995 * 15 14 13 42 42 H 0.96996 * 119.99680 * 0.02562 * 18 16 15 43 43 H 0.97004 * 120.00226 * 179.97438 * 22 21 19 44 44 H 1.09007 * 109.45359 * 301.72408 * 27 14 13 45 45 H 1.08993 * 109.45474 * 181.75190 * 27 14 13 46 46 H 1.09002 * 109.50324 * 180.88911 * 28 27 14 47 47 H 1.08997 * 109.50513 * 60.76519 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3530 1.1675 -0.0385 5 6 1.3967 2.4532 0.0407 6 7 0.0778 2.4419 -0.0804 7 6 -0.6140 3.5669 -0.0431 8 6 0.0596 4.7703 0.1142 9 6 1.4424 4.7448 0.2325 10 7 2.0708 3.5833 0.1925 11 6 2.1974 -1.2688 0.0006 12 6 1.8260 -2.0746 -1.2473 13 6 2.5460 -3.4246 -1.2097 14 7 2.1568 -4.1562 0.0025 15 6 2.7217 -5.5123 0.0032 16 6 2.1086 -6.3122 -1.1171 17 8 1.2829 -5.8028 -1.8449 18 7 2.4788 -7.5936 -1.3111 19 6 1.9215 -8.3213 -2.3307 20 1 1.1862 -7.8676 -2.9787 21 6 2.3026 -9.6424 -2.5303 22 7 1.7681 -10.3401 -3.5072 23 14 3.5750 -10.4269 -1.4099 24 1 2.8926 -11.0591 -0.2523 25 1 4.3292 -11.4600 -2.1644 26 1 4.5145 -9.3855 -0.9222 27 6 2.5471 -3.4229 1.2136 28 6 1.8260 -2.0736 1.2491 29 1 -0.3633 0.1125 -1.0215 30 1 -0.3634 -0.9408 0.4134 31 1 -0.3633 0.8284 0.6082 32 1 -1.6897 3.5508 -0.1380 33 1 -0.4799 5.7053 0.1442 34 1 1.9976 5.6629 0.3565 35 1 3.2693 -1.0705 0.0000 36 1 0.7486 -2.2382 -1.2675 37 1 2.1279 -1.5248 -2.1387 38 1 3.6236 -3.2605 -1.2047 39 1 2.2715 -4.0070 -2.0892 40 1 3.8010 -5.4563 -0.1385 41 1 2.5048 -5.9956 0.9558 42 1 3.1394 -8.0009 -0.7293 43 1 2.0345 -11.2623 -3.6468 44 1 3.6247 -3.2588 1.2072 45 1 2.2734 -4.0042 2.0940 46 1 2.1279 -1.5230 2.1401 47 1 0.7485 -2.2372 1.2694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316935368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:04 Heat of formation + Delta-G solvation = 24.108520 kcal Electronic energy + Delta-G solvation = -30132.035036 eV Core-core repulsion = 25930.693336 eV Total energy + Delta-G solvation = -4201.341700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.77768 -40.09449 -38.92856 -37.67562 -35.85370 -34.33034 -33.90561 -33.02576 -31.86137 -31.54727 -30.75267 -27.69672 -27.12073 -25.80406 -25.05488 -24.25503 -23.10657 -22.69642 -20.73230 -19.42505 -19.33345 -18.27814 -18.25008 -17.77839 -16.72625 -16.48513 -16.16584 -15.97212 -15.53717 -15.16429 -14.99346 -14.81901 -14.65833 -14.24937 -14.06237 -14.00745 -13.51079 -13.41767 -13.24861 -13.07305 -12.96956 -12.66373 -12.44839 -12.20150 -11.79126 -11.64485 -11.51737 -11.30047 -11.16844 -11.11241 -11.08416 -10.62346 -10.56340 -10.46639 -10.27881 -10.13765 -9.95584 -9.59971 -9.51235 -8.77423 -8.52472 -8.15637 -7.91518 -6.29092 -3.80265 -0.03261 0.50834 2.31928 2.38580 3.04488 3.08593 3.16780 3.35860 3.44807 3.72151 3.76396 3.95260 3.99641 4.12298 4.32909 4.46285 4.58293 4.70025 4.81786 4.89277 5.02401 5.13419 5.16936 5.23809 5.30722 5.41626 5.50349 5.52706 5.62024 5.65930 5.68726 5.70860 5.78922 5.91901 5.95181 5.97017 6.01038 6.12383 6.30556 6.33877 6.41575 6.49490 7.03910 7.22265 7.36898 7.38473 7.61110 7.86144 8.16986 8.62673 8.97610 9.44963 9.86182 10.84049 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032315 B = 0.001874 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.265679 B =14939.242022 C =15276.735484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.585 5.585 3 C 0.579 3.421 4 O -0.510 6.510 5 C 0.287 3.713 6 N -0.484 5.484 7 C 0.139 3.861 8 C -0.210 4.210 9 C 0.146 3.854 10 N -0.469 5.469 11 C 0.137 3.863 12 C -0.117 4.117 13 C 0.055 3.945 14 N -0.516 5.516 15 C 0.043 3.957 16 C 0.453 3.547 17 O -0.558 6.558 18 N -0.592 5.592 19 C -0.303 4.303 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.058 3.942 28 C -0.121 4.121 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.177 0.823 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.025 0.975 39 H 0.109 0.891 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.033 0.967 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.851 28.557 12.201 31.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.317 5.317 3 C 0.362 3.638 4 O -0.382 6.382 5 C 0.017 3.983 6 N -0.201 5.201 7 C -0.027 4.027 8 C -0.232 4.232 9 C -0.021 4.021 10 N -0.184 5.184 11 C 0.035 3.965 12 C -0.156 4.156 13 C -0.073 4.073 14 N -0.241 5.241 15 C -0.088 4.088 16 C 0.239 3.761 17 O -0.440 6.440 18 N -0.231 5.231 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.071 4.071 28 C -0.160 4.160 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.194 0.806 33 H 0.172 0.828 34 H 0.193 0.807 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.127 0.873 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.203 0.797 43 H 0.083 0.917 44 H 0.051 0.949 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.754 27.766 11.519 30.186 hybrid contribution 1.226 0.200 0.823 1.490 sum -1.528 27.966 12.343 30.606 Atomic orbital electron populations 1.22388 0.77904 1.03452 1.03192 1.47768 1.08249 1.04811 1.70827 1.17329 0.86284 0.81878 0.78354 1.90804 1.12567 1.86072 1.48778 1.22962 0.87018 0.93817 0.94482 1.68995 1.08017 1.30210 1.12885 1.23517 1.01520 0.87466 0.90150 1.23208 0.97074 1.01420 1.01510 1.23433 0.92076 0.96202 0.90376 1.68276 1.41068 0.98315 1.10730 1.21377 0.97615 0.81411 0.96127 1.21879 1.02533 0.94836 0.96350 1.22234 0.96051 0.94007 0.95035 1.61523 1.59791 1.01066 1.01683 1.21866 0.96999 0.90122 0.99808 1.19657 0.86297 0.82624 0.87535 1.90521 1.35151 1.69800 1.48552 1.42223 1.39216 1.11201 1.30509 1.19421 1.22308 0.93746 1.07719 0.86271 1.25032 0.97980 0.96195 0.96986 1.69621 1.42729 1.09938 1.29942 0.86677 0.81665 0.79981 0.81092 1.19635 1.20241 1.19524 1.22052 0.97224 0.94100 0.93676 1.21911 1.02239 0.94904 0.96899 0.92185 0.91229 0.88158 0.80555 0.82820 0.80661 0.88332 0.90209 0.91434 0.95676 0.87338 0.93316 0.89166 0.79738 0.91658 0.94901 0.90309 0.91392 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 8.24 59.84 0.49 1.18 16 2 N -0.58 -6.97 2.77 -174.64 -0.48 -7.45 16 3 C 0.58 7.93 7.70 -12.01 -0.09 7.84 16 4 O -0.51 -8.64 16.21 5.39 0.09 -8.55 16 5 C 0.29 3.30 7.47 -157.08 -1.17 2.13 16 6 N -0.48 -4.19 6.07 -11.12 -0.07 -4.26 16 7 C 0.14 0.71 11.30 -17.22 -0.19 0.51 16 8 C -0.21 -0.82 10.18 -39.16 -0.40 -1.22 16 9 C 0.15 0.92 11.30 -17.22 -0.19 0.72 16 10 N -0.47 -5.21 10.14 -11.12 -0.11 -5.32 16 11 C 0.14 1.72 2.58 -67.81 -0.17 1.55 16 12 C -0.12 -1.62 5.42 -26.65 -0.14 -1.77 16 13 C 0.05 0.88 5.10 -3.83 -0.02 0.86 16 14 N -0.52 -8.15 4.40 -236.11 -1.04 -9.19 16 15 C 0.04 0.73 5.45 -4.98 -0.03 0.70 16 16 C 0.45 10.18 7.46 -10.98 -0.08 10.10 16 17 O -0.56 -14.60 13.90 5.55 0.08 -14.53 16 18 N -0.59 -14.03 5.09 -10.96 -0.06 -14.09 16 19 C -0.30 -8.54 10.16 -14.93 -0.15 -8.69 16 20 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.79 13.96 55.50 0.77 -25.02 16 23 Si 0.88 19.42 27.74 -169.99 -4.71 14.70 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 27 C 0.06 0.71 5.46 -3.83 -0.02 0.69 16 28 C -0.12 -1.37 5.41 -26.65 -0.14 -1.51 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.63 6.40 -51.93 -0.33 0.29 16 31 H 0.10 0.86 5.30 -52.02 -0.28 0.59 16 32 H 0.18 0.26 8.06 -52.48 -0.42 -0.16 16 33 H 0.15 0.05 8.06 -52.49 -0.42 -0.37 16 34 H 0.18 0.50 8.06 -52.48 -0.42 0.08 16 35 H 0.10 1.39 6.90 -51.92 -0.36 1.03 16 36 H 0.08 1.14 7.60 -51.93 -0.39 0.75 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.11 2.12 5.78 -51.93 -0.30 1.82 16 40 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 41 H 0.09 1.30 7.99 -51.93 -0.41 0.89 16 42 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 44 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.90 6.59 -51.93 -0.34 0.55 16 LS Contribution 378.78 15.07 5.71 5.71 Total: -1.00 -36.43 378.78 -8.68 -45.11 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.43 Total: 8.78 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: -2.42 Total: 14.11 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: -0.98 Total: -65.33 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.16 Total: -23.08 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.71 Total: 14.70 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.43 -8.68 -45.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316935368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.214 kcal (2) G-P(sol) polarization free energy of solvation -36.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds