Wall clock time and date at job start Wed Apr 1 2020 05:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34775 * 120.00296 * 2 1 4 4 O 1.21467 * 120.00232 * 182.09507 * 3 2 1 5 5 C 1.48542 * 119.99700 * 1.81418 * 3 2 1 6 6 N 1.32459 * 119.18383 * 352.19360 * 5 3 2 7 7 C 1.32111 * 120.76507 * 179.71835 * 6 5 3 8 8 C 1.38806 * 119.16670 * 0.53690 * 7 6 5 9 9 C 1.38804 * 118.49943 * 359.73662 * 8 7 6 10 10 N 1.32110 * 119.16976 * 359.97438 * 9 8 7 11 11 C 1.46504 * 119.99728 * 179.97438 * 2 1 3 12 12 C 1.53113 * 109.52208 * 59.87644 * 11 2 1 13 13 C 1.53049 * 109.27536 * 182.50115 * 12 11 2 14 14 N 1.46839 * 109.57558 * 59.08158 * 13 12 11 15 15 C 1.46904 * 111.00126 * 174.19290 * 14 13 12 16 16 C 1.50697 * 109.46876 * 294.21125 * 15 14 13 17 17 O 1.21290 * 120.00552 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99717 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99960 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99785 * 0.02562 * 19 18 16 21 21 C 1.38941 * 119.99875 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00018 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00100 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47097 * 90.00562 * 23 21 19 25 25 H 1.48500 * 109.46967 * 210.00174 * 23 21 19 26 26 H 1.48498 * 109.47377 * 330.00395 * 23 21 19 27 27 C 1.46851 * 111.20107 * 298.29518 * 14 13 12 28 28 C 1.53032 * 109.52458 * 61.73927 * 27 14 13 29 29 H 1.08999 * 109.47100 * 83.71564 * 1 2 3 30 30 H 1.09002 * 109.47359 * 203.72083 * 1 2 3 31 31 H 1.09000 * 109.47125 * 323.71476 * 1 2 3 32 32 H 1.08006 * 120.42089 * 180.27448 * 7 6 5 33 33 H 1.07992 * 120.75097 * 179.75231 * 8 7 6 34 34 H 1.08004 * 120.41167 * 180.02562 * 9 8 7 35 35 H 1.09008 * 109.51738 * 179.97438 * 11 2 1 36 36 H 1.08997 * 109.50749 * 302.37895 * 12 11 2 37 37 H 1.09000 * 109.50601 * 62.50069 * 12 11 2 38 38 H 1.09005 * 109.40966 * 299.06857 * 13 12 11 39 39 H 1.08998 * 109.45574 * 179.12716 * 13 12 11 40 40 H 1.09000 * 109.46622 * 54.21307 * 15 14 13 41 41 H 1.08996 * 109.46835 * 174.20995 * 15 14 13 42 42 H 0.96996 * 119.99680 * 0.02562 * 18 16 15 43 43 H 0.97004 * 120.00226 * 179.97438 * 22 21 19 44 44 H 1.09007 * 109.45359 * 301.72408 * 27 14 13 45 45 H 1.08993 * 109.45474 * 181.75190 * 27 14 13 46 46 H 1.09002 * 109.50324 * 180.88911 * 28 27 14 47 47 H 1.08997 * 109.50513 * 60.76519 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3530 1.1675 -0.0385 5 6 1.3967 2.4532 0.0407 6 7 0.0778 2.4419 -0.0804 7 6 -0.6140 3.5669 -0.0431 8 6 0.0596 4.7703 0.1142 9 6 1.4424 4.7448 0.2325 10 7 2.0708 3.5833 0.1925 11 6 2.1974 -1.2688 0.0006 12 6 1.8260 -2.0746 -1.2473 13 6 2.5460 -3.4246 -1.2097 14 7 2.1568 -4.1562 0.0025 15 6 2.7217 -5.5123 0.0032 16 6 2.1086 -6.3122 -1.1171 17 8 1.2829 -5.8028 -1.8449 18 7 2.4788 -7.5936 -1.3111 19 6 1.9215 -8.3213 -2.3307 20 1 1.1862 -7.8676 -2.9787 21 6 2.3026 -9.6424 -2.5303 22 7 1.7681 -10.3401 -3.5072 23 14 3.5750 -10.4269 -1.4099 24 1 2.8926 -11.0591 -0.2523 25 1 4.3292 -11.4600 -2.1644 26 1 4.5145 -9.3855 -0.9222 27 6 2.5471 -3.4229 1.2136 28 6 1.8260 -2.0736 1.2491 29 1 -0.3633 0.1125 -1.0215 30 1 -0.3634 -0.9408 0.4134 31 1 -0.3633 0.8284 0.6082 32 1 -1.6897 3.5508 -0.1380 33 1 -0.4799 5.7053 0.1442 34 1 1.9976 5.6629 0.3565 35 1 3.2693 -1.0705 0.0000 36 1 0.7486 -2.2382 -1.2675 37 1 2.1279 -1.5248 -2.1387 38 1 3.6236 -3.2605 -1.2047 39 1 2.2715 -4.0070 -2.0892 40 1 3.8010 -5.4563 -0.1385 41 1 2.5048 -5.9956 0.9558 42 1 3.1394 -8.0009 -0.7293 43 1 2.0345 -11.2623 -3.6468 44 1 3.6247 -3.2588 1.2072 45 1 2.2734 -4.0042 2.0940 46 1 2.1279 -1.5230 2.1401 47 1 0.7485 -2.2372 1.2694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316935368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:03 Heat of formation + Delta-G solvation = -4.325065 kcal Electronic energy + Delta-G solvation = -30133.268009 eV Core-core repulsion = 25930.693336 eV Total energy + Delta-G solvation = -4202.574672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.41052 -41.11189 -40.37502 -39.07613 -36.93221 -35.91875 -34.92776 -33.85664 -33.66157 -32.63491 -31.85165 -29.06756 -27.99010 -26.90161 -25.79326 -25.50285 -24.22671 -23.81170 -21.63159 -21.23829 -20.45347 -20.17997 -18.97581 -18.49981 -17.74234 -17.49026 -17.19571 -16.93087 -16.83158 -16.45378 -16.31722 -15.82965 -15.51913 -15.43061 -15.28164 -15.00548 -14.72200 -14.59591 -14.52800 -14.39259 -14.09588 -13.95237 -13.78255 -13.32393 -13.20585 -12.93890 -12.73388 -12.41386 -12.36041 -12.18696 -12.12073 -11.97229 -11.92074 -11.70907 -11.59637 -11.40977 -11.04159 -10.73100 -10.32661 -10.20779 -10.19185 -9.71996 -9.20477 -8.39145 -5.99328 -0.61571 0.06997 1.31482 1.36683 1.45262 1.49227 1.54339 1.99209 2.24462 2.62268 2.72607 2.79719 3.16012 3.17480 3.23373 3.63197 3.68924 3.81819 3.84706 3.99366 4.10229 4.12678 4.25074 4.28268 4.33621 4.36079 4.42581 4.50719 4.53363 4.64076 4.71821 4.76242 4.80507 4.92200 4.96085 5.03588 5.09561 5.11703 5.28343 5.36514 5.48453 5.55574 5.88243 5.91699 6.03066 6.14845 6.22074 6.62639 6.72585 6.91482 6.98536 7.43127 8.00672 8.78499 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032315 B = 0.001874 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.265679 B =14939.242022 C =15276.735484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.581 5.581 3 C 0.571 3.429 4 O -0.557 6.557 5 C 0.257 3.743 6 N -0.492 5.492 7 C 0.130 3.870 8 C -0.178 4.178 9 C 0.129 3.871 10 N -0.510 5.510 11 C 0.142 3.858 12 C -0.107 4.107 13 C 0.060 3.940 14 N -0.532 5.532 15 C 0.054 3.946 16 C 0.452 3.548 17 O -0.603 6.603 18 N -0.594 5.594 19 C -0.324 4.324 20 H 0.056 0.944 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.256 1.256 25 H -0.277 1.277 26 H -0.233 1.233 27 C 0.059 3.941 28 C -0.113 4.113 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.217 0.783 33 H 0.201 0.799 34 H 0.205 0.795 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.032 0.968 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.126 0.874 42 H 0.389 0.611 43 H 0.278 0.722 44 H 0.043 0.957 45 H 0.102 0.898 46 H 0.083 0.917 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 30.454 15.622 34.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.312 5.312 3 C 0.356 3.644 4 O -0.434 6.434 5 C -0.012 4.012 6 N -0.210 5.210 7 C -0.034 4.034 8 C -0.200 4.200 9 C -0.036 4.036 10 N -0.226 5.226 11 C 0.039 3.961 12 C -0.146 4.146 13 C -0.069 4.069 14 N -0.258 5.258 15 C -0.077 4.077 16 C 0.240 3.760 17 O -0.487 6.487 18 N -0.236 5.236 19 C -0.454 4.454 20 H 0.074 0.926 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.784 3.216 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.156 1.156 27 C -0.068 4.068 28 C -0.151 4.151 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.233 0.767 33 H 0.218 0.782 34 H 0.222 0.778 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.144 0.856 42 H 0.224 0.776 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.120 0.880 46 H 0.102 0.898 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.558 29.699 14.966 33.355 hybrid contribution 0.961 -0.159 -0.345 1.033 sum -1.597 29.540 14.621 32.999 Atomic orbital electron populations 1.22486 0.76351 1.04265 1.03395 1.47825 1.09116 1.04241 1.70028 1.17812 0.86048 0.83115 0.77390 1.90751 1.14518 1.86961 1.51164 1.22382 0.88005 0.92941 0.97876 1.68880 1.06774 1.32243 1.13079 1.24293 1.03143 0.86907 0.89073 1.23704 0.96032 1.02834 0.97405 1.24074 0.93739 0.95649 0.90107 1.68172 1.42806 0.99580 1.12077 1.21218 0.96906 0.81841 0.96105 1.21737 1.01710 0.94063 0.97078 1.22039 0.96593 0.94233 0.94022 1.61480 1.60538 1.01072 1.02690 1.21825 0.97739 0.89828 0.98312 1.20890 0.84969 0.82262 0.87915 1.90514 1.37025 1.70689 1.50423 1.42049 1.39903 1.11584 1.30031 1.18990 1.22530 0.94884 1.08961 0.92610 1.26094 1.00484 0.96130 0.98763 1.69806 1.44832 1.10636 1.32392 0.85374 0.78421 0.79283 0.78497 1.18058 1.20224 1.15603 1.22166 0.97943 0.94200 0.92508 1.21863 1.02345 0.94392 0.96505 0.92406 0.90692 0.86875 0.76660 0.78214 0.77793 0.89951 0.90905 0.92149 0.94949 0.91565 0.90741 0.85620 0.77579 0.91247 0.93913 0.87958 0.89813 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.41 8.24 127.77 1.05 2.46 16 2 N -0.58 -14.07 2.77 -824.76 -2.28 -16.35 16 3 C 0.57 16.31 7.70 86.99 0.67 16.98 16 4 O -0.56 -20.03 16.21 -3.61 -0.06 -20.09 16 5 C 0.26 5.95 7.47 137.69 1.03 6.98 16 6 N -0.49 -7.89 6.07 -189.08 -1.15 -9.03 16 7 C 0.13 0.91 11.30 84.79 0.96 1.86 16 8 C -0.18 -0.70 10.18 22.54 0.23 -0.47 16 9 C 0.13 1.36 11.30 84.79 0.96 2.32 16 10 N -0.51 -11.28 10.14 -189.09 -1.92 -13.20 16 11 C 0.14 3.60 2.58 45.07 0.12 3.72 16 12 C -0.11 -3.08 5.42 30.65 0.17 -2.91 16 13 C 0.06 1.95 5.10 86.33 0.44 2.39 16 14 N -0.53 -16.14 4.40 -900.92 -3.96 -20.10 16 15 C 0.05 1.67 5.45 85.56 0.47 2.14 16 16 C 0.45 20.43 7.46 87.66 0.65 21.09 16 17 O -0.60 -33.11 13.90 -3.06 -0.04 -33.15 16 18 N -0.59 -28.11 5.09 -306.98 -1.56 -29.67 16 19 C -0.32 -19.09 10.16 84.04 0.85 -18.23 16 20 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 21 C -0.02 -0.92 5.50 84.92 0.47 -0.45 16 22 N -0.94 -56.86 13.96 21.66 0.30 -56.56 16 23 Si 0.96 39.17 27.74 68.60 1.90 41.07 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 25 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 26 H -0.23 -7.99 6.52 99.48 0.65 -7.35 16 27 C 0.06 1.30 5.46 86.32 0.47 1.77 16 28 C -0.11 -2.35 5.41 30.65 0.17 -2.19 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.28 6.40 -2.39 -0.02 1.27 16 31 H 0.11 1.82 5.30 -2.57 -0.01 1.81 16 32 H 0.22 -0.35 8.06 -2.91 -0.02 -0.37 16 33 H 0.20 -1.08 8.06 -2.91 -0.02 -1.10 16 34 H 0.21 0.64 8.06 -2.91 -0.02 0.62 16 35 H 0.08 2.39 6.90 -2.38 -0.02 2.37 16 36 H 0.07 2.17 7.60 -2.39 -0.02 2.15 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.07 2.75 5.78 -2.39 -0.01 2.73 16 40 H 0.07 1.99 8.12 -2.39 -0.02 1.97 16 41 H 0.13 3.08 7.99 -2.39 -0.02 3.06 16 42 H 0.39 15.26 5.76 -92.71 -0.53 14.73 16 43 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.10 1.81 8.01 -2.39 -0.02 1.79 16 46 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.08 1.70 6.59 -2.39 -0.02 1.68 16 Total: -1.00 -89.51 378.78 0.35 -89.16 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.42 Total: 30.48 kcal Atomic # 6 Polarization: 28.74 SS G_CDS: 8.70 Total: 37.44 kcal Atomic # 7 Polarization: -134.34 SS G_CDS: -10.57 Total: -144.91 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -0.10 Total: -53.24 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 1.90 Total: 41.07 kcal Total: -89.51 0.35 -89.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316935368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.834 kcal (2) G-P(sol) polarization free energy of solvation -89.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds