Wall clock time and date at job start Wed Apr 1 2020 06:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36943 * 119.99738 * 2 1 4 4 H 1.07986 * 120.00286 * 209.42954 * 3 2 1 5 5 C 1.38819 * 119.99731 * 29.43270 * 3 2 1 6 6 N 1.31627 * 119.99961 * 357.08684 * 5 3 2 7 7 Si 1.86799 * 120.00014 * 177.08623 * 5 3 2 8 8 H 1.48505 * 109.46973 * 89.99822 * 7 5 3 9 9 H 1.48492 * 109.47263 * 210.00068 * 7 5 3 10 10 H 1.48507 * 109.47003 * 330.00246 * 7 5 3 11 11 C 1.46498 * 120.00521 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46837 * 89.99740 * 11 2 1 13 13 H 1.08994 * 109.49920 * 55.06756 * 12 11 2 14 14 C 1.53042 * 109.49571 * 175.16633 * 12 11 2 15 15 C 1.53349 * 109.60689 * 181.32313 * 14 12 11 16 16 C 1.53190 * 109.15168 * 298.71184 * 15 14 12 17 17 N 1.46922 * 108.89320 * 54.57523 * 16 15 14 18 18 C 1.34775 * 120.63232 * 126.30410 * 17 16 15 19 19 O 1.21488 * 120.00452 * 175.74261 * 18 17 16 20 20 C 1.48310 * 119.99710 * 355.73680 * 18 17 16 21 21 N 1.32892 * 120.14373 * 75.64782 * 20 18 17 22 22 C 1.31829 * 119.99929 * 180.02562 * 21 20 18 23 23 C 1.39007 * 120.29133 * 0.02562 * 22 21 20 24 24 N 1.31837 * 120.29048 * 0.02562 * 23 22 21 25 25 C 1.32894 * 119.99621 * 359.70270 * 24 23 22 26 26 C 1.48306 * 120.14701 * 180.30072 * 25 24 23 27 27 N 1.34772 * 119.99960 * 4.44627 * 26 25 24 28 28 O 1.21495 * 120.00103 * 184.44183 * 26 25 24 29 29 C 1.46927 * 118.74118 * 306.32316 * 17 16 15 30 30 H 1.09006 * 109.46413 * 275.22196 * 1 2 3 31 31 H 1.08993 * 109.47328 * 35.22254 * 1 2 3 32 32 H 1.08994 * 109.47023 * 155.22903 * 1 2 3 33 33 H 0.96999 * 119.99641 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.46782 * 329.99870 * 11 2 1 35 35 H 1.08993 * 109.47065 * 209.99431 * 11 2 1 36 36 H 1.09007 * 109.45585 * 301.33474 * 14 12 11 37 37 H 1.09000 * 109.46321 * 61.30453 * 14 12 11 38 38 H 1.08995 * 109.68187 * 178.74284 * 15 14 12 39 39 H 1.09005 * 109.47053 * 58.54772 * 15 14 12 40 40 H 1.09001 * 109.58035 * 294.72133 * 16 15 14 41 41 H 1.08995 * 109.58787 * 174.43540 * 16 15 14 42 42 H 1.07999 * 119.85696 * 179.97438 * 22 21 20 43 43 H 1.07995 * 119.85609 * 180.02562 * 23 22 21 44 44 H 0.96999 * 120.00322 * 359.97438 * 27 26 25 45 45 H 0.97000 * 120.00326 * 180.02562 * 27 26 25 46 46 H 1.08998 * 109.58781 * 173.39378 * 29 17 16 47 47 H 1.08998 * 109.58812 * 293.67847 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1250 1.2464 -0.4595 5 6 1.5899 2.3106 0.5908 6 7 0.3775 2.2519 1.1001 7 14 2.5570 3.9070 0.6630 8 1 2.2759 4.7115 -0.5533 9 1 2.1550 4.6753 1.8685 10 1 4.0091 3.6035 0.7309 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7096 -1.4433 13 1 2.9652 -0.9129 -1.9821 14 6 3.3208 -2.9700 -1.4464 15 6 3.6054 -3.3953 -2.8919 16 6 2.2808 -3.7157 -3.5916 17 7 1.3847 -2.5580 -3.4668 18 6 0.8196 -2.0062 -4.5588 19 8 0.0206 -1.0992 -4.4368 20 6 1.1733 -2.5060 -5.9096 21 7 0.6791 -3.6604 -6.3445 22 6 0.9958 -4.1023 -7.5455 23 6 1.8465 -3.3660 -8.3617 24 7 2.3442 -2.2198 -7.9414 25 6 2.0283 -1.7608 -6.7349 26 6 2.5810 -0.4686 -6.2613 27 7 3.3325 0.2860 -7.0872 28 8 2.3561 -0.0903 -5.1289 29 6 1.1166 -2.0131 -2.1289 30 1 -0.3632 0.0935 1.0235 31 1 -0.3633 0.8394 -0.5927 32 1 -0.3633 -0.9331 -0.4306 33 1 -0.0134 3.0376 1.5132 34 1 1.6086 -2.0285 0.5130 35 1 3.1500 -1.1384 0.5132 36 1 4.2623 -2.7635 -0.9372 37 1 2.7966 -3.7733 -0.9287 38 1 4.2421 -4.2800 -2.8957 39 1 4.1073 -2.5829 -3.4176 40 1 1.8211 -4.5858 -3.1228 41 1 2.4651 -3.9231 -4.6456 42 1 0.5931 -5.0410 -7.8965 43 1 2.1010 -3.7344 -9.3445 44 1 3.5124 -0.0162 -7.9912 45 1 3.6943 1.1310 -6.7774 46 1 0.5349 -1.0957 -2.2178 47 1 0.5598 -2.7434 -1.5417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317046247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:48 Heat of formation + Delta-G solvation = 12.612618 kcal Electronic energy + Delta-G solvation = -32133.203453 eV Core-core repulsion = 27931.363254 eV Total energy + Delta-G solvation = -4201.840199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.90579 -39.66173 -39.17899 -37.41282 -35.38880 -35.04680 -33.63644 -32.95575 -32.05334 -31.60486 -29.90833 -26.82295 -26.01107 -25.87762 -25.37400 -24.42084 -22.38397 -21.66010 -21.10883 -20.07199 -19.23496 -18.54093 -18.38677 -17.52692 -16.64951 -16.48505 -16.28491 -15.70543 -15.43054 -15.00112 -14.83139 -14.62098 -14.41081 -14.19921 -14.09260 -13.71896 -13.51423 -13.23523 -13.03706 -12.68137 -12.36318 -12.27803 -12.24770 -11.82358 -11.48928 -11.15071 -10.92770 -10.78232 -10.69342 -10.64034 -10.52981 -10.35852 -10.18076 -10.03175 -9.89393 -9.83833 -9.77361 -9.75068 -9.67276 -9.41384 -8.36400 -8.29105 -6.47278 -5.56340 -3.06371 -0.16169 0.42123 2.42947 2.63081 2.82472 2.99908 3.29587 3.49197 3.54317 3.55383 3.55903 3.86434 3.93483 4.35562 4.60603 4.62785 4.66389 4.80148 4.82419 5.02627 5.14780 5.44627 5.48798 5.54110 5.60557 5.65461 5.83329 5.86127 5.99267 6.19247 6.22411 6.26761 6.38455 6.47250 6.52649 6.59383 6.69615 6.83709 6.91742 6.95486 7.01773 7.15758 7.17600 7.57402 7.65494 7.96259 8.01183 8.01769 8.31121 8.62128 9.43827 10.04846 10.56505 11.48272 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013435 B = 0.003567 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.572332 B = 7848.233091 C = 8725.428668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.602 5.602 3 C -0.249 4.249 4 H 0.064 0.936 5 C 0.007 3.993 6 N -0.908 5.908 7 Si 0.901 3.099 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.161 3.839 12 C -0.123 4.123 13 H 0.077 0.923 14 C -0.112 4.112 15 C -0.133 4.133 16 C 0.115 3.885 17 N -0.591 5.591 18 C 0.588 3.412 19 O -0.501 6.501 20 C 0.112 3.888 21 N -0.413 5.413 22 C 0.077 3.923 23 C 0.057 3.943 24 N -0.410 5.410 25 C 0.059 3.941 26 C 0.565 3.435 27 N -0.834 5.834 28 O -0.481 6.481 29 C 0.129 3.871 30 H 0.027 0.973 31 H 0.044 0.956 32 H -0.005 1.005 33 H 0.251 0.749 34 H 0.035 0.965 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.184 0.816 43 H 0.184 0.816 44 H 0.408 0.592 45 H 0.410 0.590 46 H 0.107 0.893 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.634 -17.244 -20.717 27.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.324 5.324 3 C -0.379 4.379 4 H 0.081 0.919 5 C -0.191 4.191 6 N -0.554 5.554 7 Si 0.731 3.269 8 H -0.216 1.216 9 H -0.217 1.217 10 H -0.206 1.206 11 C 0.033 3.967 12 C -0.145 4.145 13 H 0.095 0.905 14 C -0.150 4.150 15 C -0.172 4.172 16 C -0.008 4.008 17 N -0.324 5.324 18 C 0.371 3.629 19 O -0.374 6.374 20 C -0.031 4.031 21 N -0.130 5.130 22 C -0.086 4.086 23 C -0.107 4.107 24 N -0.127 5.127 25 C -0.082 4.082 26 C 0.345 3.655 27 N -0.400 5.400 28 O -0.352 6.352 29 C 0.009 3.991 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.013 0.987 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.201 0.799 43 H 0.201 0.799 44 H 0.237 0.763 45 H 0.243 0.757 46 H 0.125 0.875 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.808 -16.424 -19.670 26.275 hybrid contribution 0.783 0.927 -0.754 1.429 sum 6.592 -15.496 -20.424 26.471 Atomic orbital electron populations 1.20898 0.82722 0.95371 0.99078 1.43819 1.01748 1.00551 1.86324 1.19106 1.01556 0.87477 1.29721 0.91867 1.25209 0.96856 0.98769 0.98275 1.70058 1.14158 1.28553 1.42588 0.86310 0.79655 0.83902 0.77043 1.21566 1.21732 1.20574 1.20709 0.96229 0.88439 0.91350 1.22299 0.94758 0.96484 1.00944 0.90499 1.21593 1.00303 0.98224 0.94898 1.21972 0.96177 1.01363 0.97650 1.21611 0.90773 0.88451 0.99984 1.47922 1.46410 1.31097 1.06974 1.17257 0.81470 0.82053 0.82080 1.90851 1.33634 1.28195 1.84689 1.22352 0.92507 0.90813 0.97385 1.68706 1.18947 1.10484 1.14825 1.24227 0.94069 1.00632 0.89695 1.24056 0.94414 0.90695 1.01502 1.68382 1.19515 1.12699 1.12116 1.22160 0.97334 0.97144 0.91593 1.17653 0.79326 0.82989 0.85568 1.43501 1.54205 1.24849 1.17411 1.91084 1.56283 1.70139 1.17700 1.21870 0.98137 1.00012 0.79129 0.95474 0.93750 0.98679 0.93910 0.94646 0.93183 0.91745 0.92123 0.91261 0.91767 0.90965 0.92014 0.79860 0.79947 0.76286 0.75747 0.87501 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.36 7.92 59.85 0.47 4.83 16 2 N -0.60 -16.00 2.76 -181.12 -0.50 -16.50 16 3 C -0.25 -7.26 9.62 -15.05 -0.14 -7.41 16 4 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 5 C 0.01 0.20 5.36 -17.42 -0.09 0.11 16 6 N -0.91 -27.93 10.40 55.49 0.58 -27.35 16 7 Si 0.90 23.13 29.55 -169.99 -5.02 18.11 16 8 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 9 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 11 C 0.16 3.43 5.14 -4.04 -0.02 3.41 16 12 C -0.12 -2.30 2.55 -90.49 -0.23 -2.53 16 13 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 14 C -0.11 -1.58 5.17 -26.53 -0.14 -1.72 16 15 C -0.13 -1.65 6.11 -26.45 -0.16 -1.81 16 16 C 0.12 1.49 6.34 -3.71 -0.02 1.47 16 17 N -0.59 -10.14 2.97 -173.71 -0.52 -10.65 16 18 C 0.59 11.08 5.13 -12.12 -0.06 11.02 16 19 O -0.50 -11.65 15.73 -13.76 -0.22 -11.87 16 20 C 0.11 1.66 4.70 -82.50 -0.39 1.27 16 21 N -0.41 -4.91 10.03 -9.31 -0.09 -5.00 16 22 C 0.08 0.53 11.23 -17.27 -0.19 0.34 16 23 C 0.06 0.35 11.23 -17.26 -0.19 0.15 16 24 N -0.41 -3.89 9.72 -9.31 -0.09 -3.99 16 25 C 0.06 0.78 6.78 -82.50 -0.56 0.22 16 26 C 0.56 8.38 8.06 -12.12 -0.10 8.29 16 27 N -0.83 -8.39 8.86 30.63 0.27 -8.11 16 28 O -0.48 -9.63 14.67 -13.77 -0.20 -9.83 16 29 C 0.13 2.48 4.43 -3.71 -0.02 2.46 16 30 H 0.03 0.77 7.32 -51.93 -0.38 0.39 16 31 H 0.04 1.31 7.35 -51.93 -0.38 0.92 16 32 H -0.01 -0.12 6.28 -51.93 -0.33 -0.45 16 33 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 35 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.74 6.02 -51.93 -0.31 0.42 16 42 H 0.18 0.46 8.06 -52.49 -0.42 0.04 16 43 H 0.18 0.29 8.06 -52.49 -0.42 -0.14 16 44 H 0.41 2.96 8.20 -40.82 -0.33 2.63 16 45 H 0.41 3.69 8.93 -40.82 -0.36 3.33 16 46 H 0.11 2.53 5.38 -51.93 -0.28 2.25 16 47 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 380.56 15.07 5.74 5.74 Total: -1.00 -38.89 380.56 -8.47 -47.36 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.56 Total: 2.01 kcal Atomic # 6 Polarization: 21.94 SS G_CDS: -1.85 Total: 20.09 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -0.35 Total: -71.60 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.42 Total: -21.70 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.89 -8.47 -47.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317046247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.973 kcal (2) G-P(sol) polarization free energy of solvation -38.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds