Wall clock time and date at job start Wed Apr 1 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36943 * 119.99738 * 2 1 4 4 H 1.07986 * 120.00286 * 209.42954 * 3 2 1 5 5 C 1.38819 * 119.99731 * 29.43270 * 3 2 1 6 6 N 1.31627 * 119.99961 * 357.08684 * 5 3 2 7 7 Si 1.86799 * 120.00014 * 177.08623 * 5 3 2 8 8 H 1.48505 * 109.46973 * 89.99822 * 7 5 3 9 9 H 1.48492 * 109.47263 * 210.00068 * 7 5 3 10 10 H 1.48507 * 109.47003 * 330.00246 * 7 5 3 11 11 C 1.46498 * 120.00521 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46837 * 89.99740 * 11 2 1 13 13 H 1.08994 * 109.49920 * 55.06756 * 12 11 2 14 14 C 1.53042 * 109.49571 * 175.16633 * 12 11 2 15 15 C 1.53349 * 109.60689 * 181.32313 * 14 12 11 16 16 C 1.53190 * 109.15168 * 298.71184 * 15 14 12 17 17 N 1.46922 * 108.89320 * 54.57523 * 16 15 14 18 18 C 1.34775 * 120.63232 * 126.30410 * 17 16 15 19 19 O 1.21488 * 120.00452 * 175.74261 * 18 17 16 20 20 C 1.48310 * 119.99710 * 355.73680 * 18 17 16 21 21 N 1.32892 * 120.14373 * 75.64782 * 20 18 17 22 22 C 1.31829 * 119.99929 * 180.02562 * 21 20 18 23 23 C 1.39007 * 120.29133 * 0.02562 * 22 21 20 24 24 N 1.31837 * 120.29048 * 0.02562 * 23 22 21 25 25 C 1.32894 * 119.99621 * 359.70270 * 24 23 22 26 26 C 1.48306 * 120.14701 * 180.30072 * 25 24 23 27 27 N 1.34772 * 119.99960 * 4.44627 * 26 25 24 28 28 O 1.21495 * 120.00103 * 184.44183 * 26 25 24 29 29 C 1.46927 * 118.74118 * 306.32316 * 17 16 15 30 30 H 1.09006 * 109.46413 * 275.22196 * 1 2 3 31 31 H 1.08993 * 109.47328 * 35.22254 * 1 2 3 32 32 H 1.08994 * 109.47023 * 155.22903 * 1 2 3 33 33 H 0.96999 * 119.99641 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.46782 * 329.99870 * 11 2 1 35 35 H 1.08993 * 109.47065 * 209.99431 * 11 2 1 36 36 H 1.09007 * 109.45585 * 301.33474 * 14 12 11 37 37 H 1.09000 * 109.46321 * 61.30453 * 14 12 11 38 38 H 1.08995 * 109.68187 * 178.74284 * 15 14 12 39 39 H 1.09005 * 109.47053 * 58.54772 * 15 14 12 40 40 H 1.09001 * 109.58035 * 294.72133 * 16 15 14 41 41 H 1.08995 * 109.58787 * 174.43540 * 16 15 14 42 42 H 1.07999 * 119.85696 * 179.97438 * 22 21 20 43 43 H 1.07995 * 119.85609 * 180.02562 * 23 22 21 44 44 H 0.96999 * 120.00322 * 359.97438 * 27 26 25 45 45 H 0.97000 * 120.00326 * 180.02562 * 27 26 25 46 46 H 1.08998 * 109.58781 * 173.39378 * 29 17 16 47 47 H 1.08998 * 109.58812 * 293.67847 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1250 1.2464 -0.4595 5 6 1.5899 2.3106 0.5908 6 7 0.3775 2.2519 1.1001 7 14 2.5570 3.9070 0.6630 8 1 2.2759 4.7115 -0.5533 9 1 2.1550 4.6753 1.8685 10 1 4.0091 3.6035 0.7309 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7096 -1.4433 13 1 2.9652 -0.9129 -1.9821 14 6 3.3208 -2.9700 -1.4464 15 6 3.6054 -3.3953 -2.8919 16 6 2.2808 -3.7157 -3.5916 17 7 1.3847 -2.5580 -3.4668 18 6 0.8196 -2.0062 -4.5588 19 8 0.0206 -1.0992 -4.4368 20 6 1.1733 -2.5060 -5.9096 21 7 0.6791 -3.6604 -6.3445 22 6 0.9958 -4.1023 -7.5455 23 6 1.8465 -3.3660 -8.3617 24 7 2.3442 -2.2198 -7.9414 25 6 2.0283 -1.7608 -6.7349 26 6 2.5810 -0.4686 -6.2613 27 7 3.3325 0.2860 -7.0872 28 8 2.3561 -0.0903 -5.1289 29 6 1.1166 -2.0131 -2.1289 30 1 -0.3632 0.0935 1.0235 31 1 -0.3633 0.8394 -0.5927 32 1 -0.3633 -0.9331 -0.4306 33 1 -0.0134 3.0376 1.5132 34 1 1.6086 -2.0285 0.5130 35 1 3.1500 -1.1384 0.5132 36 1 4.2623 -2.7635 -0.9372 37 1 2.7966 -3.7733 -0.9287 38 1 4.2421 -4.2800 -2.8957 39 1 4.1073 -2.5829 -3.4176 40 1 1.8211 -4.5858 -3.1228 41 1 2.4651 -3.9231 -4.6456 42 1 0.5931 -5.0410 -7.8965 43 1 2.1010 -3.7344 -9.3445 44 1 3.5124 -0.0162 -7.9912 45 1 3.6943 1.1310 -6.7774 46 1 0.5349 -1.0957 -2.2178 47 1 0.5598 -2.7434 -1.5417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317046247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:47 Heat of formation + Delta-G solvation = -19.559383 kcal Electronic energy + Delta-G solvation = -32134.598536 eV Core-core repulsion = 27931.363254 eV Total energy + Delta-G solvation = -4203.235282 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.78083 -40.92415 -40.28753 -38.90269 -37.22563 -35.94340 -34.69668 -34.45182 -33.25022 -32.93655 -31.66974 -28.43913 -27.63822 -27.03836 -26.78757 -25.56405 -23.96591 -22.64168 -22.56474 -21.66503 -20.53302 -19.45159 -19.25426 -18.78402 -18.57221 -17.67496 -17.42569 -16.94583 -16.50039 -16.47750 -16.15124 -15.83448 -15.67421 -15.53456 -15.27445 -15.19673 -14.91206 -14.78526 -14.45142 -14.06320 -13.97433 -13.88033 -13.22229 -13.05857 -13.01426 -12.84217 -12.64826 -12.53968 -12.33921 -12.16090 -12.00980 -11.93633 -11.81696 -11.71637 -11.56874 -11.38810 -11.33447 -10.90718 -10.63397 -10.60602 -10.37056 -9.68898 -8.66080 -7.83552 -5.36433 -0.98200 -0.29819 1.36515 1.39699 1.42847 1.49726 1.51520 1.71796 2.01415 2.45827 2.48466 2.82886 2.87473 3.18744 3.29895 3.51003 3.64914 3.79380 3.86063 3.93980 3.99729 4.04442 4.12288 4.30817 4.31386 4.41283 4.53629 4.75502 4.79537 4.81987 4.85354 4.88602 5.03867 5.05315 5.08826 5.19710 5.33129 5.40542 5.48613 5.57650 5.63695 5.65081 5.71187 5.79822 6.12985 6.26770 6.36721 6.39556 6.97368 7.08966 7.17179 7.88400 8.34247 9.19501 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013435 B = 0.003567 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.572332 B = 7848.233091 C = 8725.428668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.619 5.619 3 C -0.261 4.261 4 H 0.059 0.941 5 C -0.051 4.051 6 N -0.938 5.938 7 Si 0.968 3.032 8 H -0.292 1.292 9 H -0.286 1.286 10 H -0.265 1.265 11 C 0.159 3.841 12 C -0.107 4.107 13 H 0.030 0.970 14 C -0.105 4.105 15 C -0.125 4.125 16 C 0.112 3.888 17 N -0.593 5.593 18 C 0.580 3.420 19 O -0.569 6.569 20 C 0.085 3.915 21 N -0.436 5.436 22 C 0.097 3.903 23 C 0.085 3.915 24 N -0.410 5.410 25 C 0.042 3.958 26 C 0.555 3.445 27 N -0.809 5.809 28 O -0.551 6.551 29 C 0.135 3.865 30 H 0.007 0.993 31 H 0.001 0.999 32 H 0.022 0.978 33 H 0.248 0.752 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.041 0.959 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.239 0.761 43 H 0.244 0.756 44 H 0.423 0.577 45 H 0.415 0.585 46 H 0.051 0.949 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.769 -21.316 -23.756 33.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.342 5.342 3 C -0.391 4.391 4 H 0.076 0.924 5 C -0.245 4.245 6 N -0.585 5.585 7 Si 0.795 3.205 8 H -0.220 1.220 9 H -0.212 1.212 10 H -0.190 1.190 11 C 0.032 3.968 12 C -0.129 4.129 13 H 0.049 0.951 14 C -0.143 4.143 15 C -0.163 4.163 16 C -0.010 4.010 17 N -0.324 5.324 18 C 0.366 3.634 19 O -0.447 6.447 20 C -0.054 4.054 21 N -0.152 5.152 22 C -0.067 4.067 23 C -0.081 4.081 24 N -0.127 5.127 25 C -0.097 4.097 26 C 0.337 3.663 27 N -0.374 5.374 28 O -0.427 6.427 29 C 0.013 3.987 30 H 0.025 0.975 31 H 0.020 0.980 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.131 0.869 39 H 0.060 0.940 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.255 0.745 43 H 0.260 0.740 44 H 0.256 0.744 45 H 0.247 0.753 46 H 0.070 0.930 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.037 -20.519 -22.738 31.664 hybrid contribution 0.125 2.000 -0.099 2.006 sum 8.161 -18.519 -22.837 30.514 Atomic orbital electron populations 1.20518 0.83387 0.94912 0.97021 1.44041 1.01732 1.01889 1.86579 1.19371 1.01439 0.89024 1.29297 0.92362 1.25998 0.97859 1.02237 0.98454 1.70236 1.15476 1.29217 1.43562 0.85271 0.78955 0.79566 0.76692 1.21965 1.21171 1.18965 1.20930 0.95954 0.86660 0.93220 1.21996 0.95090 0.97691 0.98108 0.95107 1.21557 0.99814 0.96063 0.96842 1.21949 0.96343 1.02336 0.95711 1.21926 0.90263 0.87359 1.01420 1.48016 1.46677 1.31893 1.05819 1.17971 0.80295 0.81077 0.84053 1.90784 1.36664 1.31128 1.86143 1.21610 0.95132 0.92987 0.95687 1.68671 1.19523 1.09503 1.17519 1.25248 0.92254 1.01712 0.87500 1.25149 0.91520 0.88422 1.02960 1.68473 1.19976 1.14311 1.09979 1.21722 0.98348 0.96545 0.93052 1.18128 0.79118 0.84018 0.85062 1.43347 1.52265 1.24295 1.17538 1.91057 1.59022 1.71987 1.20619 1.21542 0.97778 0.98308 0.81094 0.97452 0.98038 0.95957 0.94306 0.92390 0.92982 0.90767 0.89513 0.86875 0.94033 0.88403 0.90609 0.74504 0.74026 0.74379 0.75253 0.93025 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.63 7.92 127.77 1.01 11.65 16 2 N -0.62 -34.75 2.76 -726.94 -2.01 -36.76 16 3 C -0.26 -16.03 9.62 84.03 0.81 -15.23 16 4 H 0.06 3.56 7.83 -2.92 -0.02 3.53 16 5 C -0.05 -3.14 5.36 84.86 0.46 -2.68 16 6 N -0.94 -60.59 10.40 21.65 0.23 -60.37 16 7 Si 0.97 49.44 29.55 68.60 2.03 51.47 16 8 H -0.29 -15.02 7.11 99.48 0.71 -14.32 16 9 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 10 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 11 C 0.16 6.93 5.14 86.38 0.44 7.37 16 12 C -0.11 -4.16 2.55 -10.71 -0.03 -4.19 16 13 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 14 C -0.10 -2.78 5.17 30.73 0.16 -2.62 16 15 C -0.13 -2.83 6.11 30.77 0.19 -2.65 16 16 C 0.11 2.70 6.34 86.36 0.55 3.24 16 17 N -0.59 -21.12 2.97 -821.81 -2.44 -23.56 16 18 C 0.58 23.36 5.13 86.92 0.45 23.80 16 19 O -0.57 -29.37 15.73 14.62 0.23 -29.14 16 20 C 0.09 2.54 4.70 42.16 0.20 2.74 16 21 N -0.44 -9.31 10.03 -183.38 -1.84 -11.14 16 22 C 0.10 0.83 11.23 84.88 0.95 1.78 16 23 C 0.08 0.55 11.23 84.88 0.95 1.51 16 24 N -0.41 -6.51 9.72 -183.37 -1.78 -8.30 16 25 C 0.04 1.09 6.78 42.16 0.29 1.38 16 26 C 0.56 17.49 8.06 86.92 0.70 18.19 16 27 N -0.81 -16.66 8.86 -175.29 -1.55 -18.21 16 28 O -0.55 -24.37 14.67 14.60 0.21 -24.15 16 29 C 0.13 5.47 4.43 86.36 0.38 5.85 16 30 H 0.01 0.44 7.32 -2.38 -0.02 0.42 16 31 H 0.00 0.05 7.35 -2.39 -0.02 0.03 16 32 H 0.02 1.11 6.28 -2.39 -0.02 1.10 16 33 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 34 H 0.06 2.27 8.07 -2.39 -0.02 2.25 16 35 H 0.05 2.23 8.04 -2.39 -0.02 2.21 16 36 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.08 1.64 6.02 -2.39 -0.01 1.63 16 42 H 0.24 -0.63 8.06 -2.91 -0.02 -0.65 16 43 H 0.24 -1.30 8.06 -2.91 -0.02 -1.32 16 44 H 0.42 5.73 8.20 -92.71 -0.76 4.97 16 45 H 0.41 7.87 8.93 -92.71 -0.83 7.04 16 46 H 0.05 2.69 5.38 -2.39 -0.01 2.67 16 47 H 0.08 2.79 8.10 -2.39 -0.02 2.77 16 Total: -1.00 -98.86 380.56 0.01 -98.84 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -0.56 Total: 11.18 kcal Atomic # 6 Polarization: 42.64 SS G_CDS: 7.50 Total: 50.15 kcal Atomic # 7 Polarization: -148.94 SS G_CDS: -9.40 Total: -158.34 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: 0.44 Total: -53.29 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 2.03 Total: 51.47 kcal Total: -98.86 0.01 -98.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317046247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.282 kcal (2) G-P(sol) polarization free energy of solvation -98.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds