Wall clock time and date at job start Wed Apr 1 2020 06:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36935 * 120.00140 * 2 1 4 4 H 1.08007 * 120.00039 * 153.92740 * 3 2 1 5 5 C 1.38808 * 119.99902 * 334.20029 * 3 2 1 6 6 N 1.31620 * 119.99936 * 352.15216 * 5 3 2 7 7 Si 1.86801 * 120.00060 * 172.14356 * 5 3 2 8 8 H 1.48493 * 109.47062 * 90.00268 * 7 5 3 9 9 H 1.48504 * 109.47149 * 210.00440 * 7 5 3 10 10 H 1.48501 * 109.47250 * 330.00342 * 7 5 3 11 11 C 1.46500 * 119.99991 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47827 * 270.00118 * 11 2 1 13 13 H 1.09004 * 109.49322 * 305.00410 * 12 11 2 14 14 C 1.53038 * 109.50102 * 184.93476 * 12 11 2 15 15 C 1.53039 * 109.53755 * 178.68474 * 14 12 11 16 16 C 1.53195 * 109.31185 * 61.36581 * 15 14 12 17 17 N 1.46925 * 108.77592 * 305.36264 * 16 15 14 18 18 C 1.34769 * 120.63174 * 233.60560 * 17 16 15 19 19 O 1.21493 * 119.99959 * 175.62084 * 18 17 16 20 20 C 1.48310 * 120.00180 * 355.62882 * 18 17 16 21 21 N 1.32892 * 120.13954 * 282.88927 * 20 18 17 22 22 C 1.31835 * 119.99882 * 179.74305 * 21 20 18 23 23 C 1.39005 * 120.28755 * 0.51120 * 22 21 20 24 24 N 1.31837 * 120.29195 * 359.76529 * 23 22 21 25 25 C 1.32891 * 119.99580 * 359.97438 * 24 23 22 26 26 C 1.48311 * 120.14352 * 179.97438 * 25 24 23 27 27 N 1.34771 * 120.00269 * 4.97484 * 26 25 24 28 28 O 1.21500 * 119.99652 * 184.97920 * 26 25 24 29 29 C 1.46939 * 118.76025 * 53.59070 * 17 16 15 30 30 H 1.09004 * 109.46612 * 93.20361 * 1 2 3 31 31 H 1.09003 * 109.46949 * 213.20299 * 1 2 3 32 32 H 1.08994 * 109.47396 * 333.20047 * 1 2 3 33 33 H 0.96998 * 119.99775 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.47265 * 30.00995 * 11 2 1 35 35 H 1.09007 * 109.47192 * 149.99742 * 11 2 1 36 36 H 1.08999 * 109.45744 * 298.70516 * 14 12 11 37 37 H 1.08998 * 109.45918 * 58.66254 * 14 12 11 38 38 H 1.09001 * 109.50033 * 181.31833 * 15 14 12 39 39 H 1.09001 * 109.50093 * 301.41700 * 15 14 12 40 40 H 1.08997 * 109.58327 * 65.15323 * 16 15 14 41 41 H 1.09001 * 109.58680 * 185.57479 * 16 15 14 42 42 H 1.07993 * 119.86205 * 180.27718 * 22 21 20 43 43 H 1.07998 * 119.85694 * 179.74577 * 23 22 21 44 44 H 0.97003 * 119.99707 * 359.97438 * 27 26 25 45 45 H 0.97000 * 120.00387 * 180.02562 * 27 26 25 46 46 H 1.09008 * 109.61016 * 186.64126 * 29 17 16 47 47 H 1.08998 * 109.56132 * 66.21561 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1473 1.2335 0.4111 5 6 1.5594 2.3281 -0.5232 6 7 0.4091 2.2430 -1.1571 7 14 2.3976 3.9860 -0.3274 8 1 3.2998 4.2239 -1.4826 9 1 1.3701 5.0568 -0.2730 10 1 3.1891 3.9952 0.9290 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7099 1.4432 13 1 2.9642 -0.9126 1.9823 14 6 3.3227 -2.9689 1.4461 15 6 3.6056 -3.3921 2.8894 16 6 2.2828 -3.7169 3.5906 17 7 1.3850 -2.5606 3.4659 18 6 0.8183 -2.0103 4.5578 19 8 0.1418 -1.0068 4.4507 20 6 1.0205 -2.6296 5.8901 21 7 0.3440 -3.7225 6.2276 22 6 0.5297 -4.2736 7.4107 23 6 1.4237 -3.7105 8.3139 24 7 2.0969 -2.6232 7.9931 25 6 1.9224 -2.0612 6.8016 26 6 2.6775 -0.8377 6.4376 27 7 3.6153 -0.3506 7.2740 28 8 2.4506 -0.2744 5.3852 29 6 1.1167 -2.0149 2.1282 30 1 -0.3633 -0.0574 -1.0261 31 1 -0.3633 -0.8599 0.5628 32 1 -0.3634 0.9172 0.4633 33 1 -0.0032 3.0411 -1.5230 34 1 1.6085 -2.0286 -0.5131 35 1 3.1499 -1.1386 -0.5134 36 1 2.8000 -3.7727 0.9278 37 1 4.2640 -2.7608 0.9375 38 1 4.2446 -4.2751 2.8910 39 1 4.1061 -2.5792 3.4155 40 1 1.8247 -4.5876 3.1214 41 1 2.4690 -3.9230 4.6446 42 1 -0.0180 -5.1643 7.6809 43 1 1.5674 -4.1654 9.2828 44 1 3.7961 -0.8001 8.1144 45 1 4.1089 0.4498 7.0361 46 1 0.5339 -1.0980 2.2173 47 1 0.5629 -2.7466 1.5399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317046248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:57 Heat of formation + Delta-G solvation = 12.722388 kcal Electronic energy + Delta-G solvation = -32078.638952 eV Core-core repulsion = 27876.803513 eV Total energy + Delta-G solvation = -4201.835439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.91361 -39.68166 -39.20804 -37.42504 -35.40510 -35.05905 -33.66770 -32.99030 -32.06507 -31.62474 -29.91475 -26.84586 -26.03786 -25.88590 -25.38970 -24.43490 -22.40110 -21.68733 -21.11850 -20.07077 -19.26728 -18.55906 -18.40426 -17.54016 -16.63997 -16.49390 -16.34964 -15.70039 -15.45211 -15.04904 -14.84236 -14.60852 -14.38657 -14.27037 -14.05825 -13.73271 -13.50809 -13.28444 -13.06904 -12.72699 -12.39118 -12.29372 -12.25295 -11.82662 -11.48840 -11.18695 -10.91986 -10.78842 -10.74658 -10.66872 -10.52577 -10.36428 -10.16078 -10.04757 -9.91758 -9.87151 -9.77927 -9.74728 -9.65695 -9.41165 -8.39189 -8.29538 -6.51512 -5.57420 -3.04095 -0.17493 0.41756 2.39450 2.62823 2.80419 2.97495 3.27872 3.49028 3.53685 3.55084 3.58741 3.87184 3.92412 4.33496 4.59935 4.62995 4.65580 4.78393 4.79523 5.00805 5.12837 5.42078 5.47241 5.52516 5.60942 5.64375 5.81923 5.83972 5.97607 6.18122 6.20603 6.25460 6.37232 6.45692 6.51567 6.55957 6.66354 6.82243 6.89901 6.93639 7.02991 7.14143 7.15390 7.55714 7.59963 7.88506 7.97920 7.98450 8.31152 8.60137 9.41659 10.04373 10.54283 11.48891 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.003501 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.842061 B = 7996.230174 C = 8763.907630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.600 5.600 3 C -0.247 4.247 4 H 0.064 0.936 5 C 0.002 3.998 6 N -0.910 5.910 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.160 3.840 12 C -0.122 4.122 13 H 0.077 0.923 14 C -0.112 4.112 15 C -0.133 4.133 16 C 0.116 3.884 17 N -0.593 5.593 18 C 0.586 3.414 19 O -0.495 6.495 20 C 0.113 3.887 21 N -0.412 5.412 22 C 0.078 3.922 23 C 0.056 3.944 24 N -0.410 5.410 25 C 0.057 3.943 26 C 0.564 3.436 27 N -0.835 5.835 28 O -0.482 6.482 29 C 0.127 3.873 30 H 0.016 0.984 31 H -0.004 1.004 32 H 0.056 0.944 33 H 0.251 0.749 34 H 0.035 0.965 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.185 0.815 43 H 0.184 0.816 44 H 0.408 0.592 45 H 0.410 0.590 46 H 0.108 0.892 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.050 -18.657 20.737 28.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.322 5.322 3 C -0.377 4.377 4 H 0.082 0.918 5 C -0.196 4.196 6 N -0.556 5.556 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.217 1.217 10 H -0.206 1.206 11 C 0.032 3.968 12 C -0.145 4.145 13 H 0.095 0.905 14 C -0.150 4.150 15 C -0.171 4.171 16 C -0.007 4.007 17 N -0.327 5.327 18 C 0.369 3.631 19 O -0.367 6.367 20 C -0.030 4.030 21 N -0.128 5.128 22 C -0.085 4.085 23 C -0.107 4.107 24 N -0.127 5.127 25 C -0.085 4.085 26 C 0.344 3.656 27 N -0.400 5.400 28 O -0.353 6.353 29 C 0.007 3.993 30 H 0.034 0.966 31 H 0.014 0.986 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.202 0.798 43 H 0.201 0.799 44 H 0.237 0.763 45 H 0.242 0.758 46 H 0.126 0.874 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.262 -17.617 19.773 27.000 hybrid contribution 0.719 0.822 0.833 1.373 sum 5.981 -16.795 20.605 27.248 Atomic orbital electron populations 1.20858 0.82739 0.97233 0.97504 1.43831 1.01767 1.00580 1.86017 1.19140 0.99690 0.86402 1.32449 0.91816 1.25054 0.97641 0.98583 0.98272 1.70048 1.18083 1.27535 1.39900 0.86281 0.78531 0.84171 0.77733 1.21579 1.21695 1.20553 1.20701 0.96235 0.88502 0.91404 1.22288 0.94777 0.96509 1.00887 0.90503 1.21536 1.00328 0.98233 0.94922 1.21909 0.96112 1.01424 0.97638 1.21590 0.90789 0.88570 0.99756 1.47936 1.46307 1.31439 1.06993 1.17271 0.80620 0.83296 0.81930 1.90862 1.39253 1.22537 1.84013 1.22345 0.91711 0.91608 0.97296 1.68681 1.19545 1.06663 1.17941 1.24234 0.95431 0.99618 0.89225 1.24054 0.93207 0.92065 1.01394 1.68372 1.20793 1.08335 1.15214 1.22162 0.97472 0.97460 0.91411 1.17676 0.80363 0.83043 0.84500 1.43515 1.40439 1.32324 1.23711 1.91096 1.64097 1.57530 1.22535 1.21913 0.98224 1.00019 0.79146 0.96567 0.98602 0.92545 0.93907 0.94647 0.93193 0.92116 0.91700 0.91263 0.91670 0.91044 0.92247 0.79846 0.79941 0.76258 0.75793 0.87391 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.27 8.20 59.85 0.49 4.76 16 2 N -0.60 -15.91 2.76 -181.12 -0.50 -16.41 16 3 C -0.25 -7.21 9.64 -15.06 -0.15 -7.35 16 4 H 0.06 1.84 7.84 -52.48 -0.41 1.43 16 5 C 0.00 0.06 5.15 -17.43 -0.09 -0.03 16 6 N -0.91 -28.02 10.65 55.49 0.59 -27.43 16 7 Si 0.90 23.31 29.56 -169.99 -5.02 18.29 16 8 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 9 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 10 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 11 C 0.16 3.39 5.17 -4.04 -0.02 3.37 16 12 C -0.12 -2.28 2.54 -90.50 -0.23 -2.51 16 13 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 14 C -0.11 -1.57 5.17 -26.69 -0.14 -1.70 16 15 C -0.13 -1.62 6.08 -26.61 -0.16 -1.79 16 16 C 0.12 1.48 6.32 -3.71 -0.02 1.46 16 17 N -0.59 -10.08 2.97 -173.70 -0.52 -10.59 16 18 C 0.59 10.99 5.22 -12.12 -0.06 10.93 16 19 O -0.49 -11.56 15.55 -14.78 -0.23 -11.79 16 20 C 0.11 1.66 4.50 -82.50 -0.37 1.29 16 21 N -0.41 -4.92 10.43 -9.31 -0.10 -5.02 16 22 C 0.08 0.54 11.23 -17.27 -0.19 0.35 16 23 C 0.06 0.34 11.23 -17.27 -0.19 0.15 16 24 N -0.41 -3.82 9.73 -9.31 -0.09 -3.91 16 25 C 0.06 0.73 6.78 -82.50 -0.56 0.17 16 26 C 0.56 8.14 8.06 -12.12 -0.10 8.04 16 27 N -0.83 -7.95 8.86 30.64 0.27 -7.68 16 28 O -0.48 -9.48 14.57 -14.79 -0.22 -9.70 16 29 C 0.13 2.42 4.45 -3.70 -0.02 2.41 16 30 H 0.02 0.45 7.77 -51.93 -0.40 0.04 16 31 H 0.00 -0.10 5.92 -51.93 -0.31 -0.41 16 32 H 0.06 1.66 6.82 -51.93 -0.35 1.30 16 33 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 35 H 0.05 1.06 8.04 -51.92 -0.42 0.64 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.70 6.36 -51.93 -0.33 0.37 16 42 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 43 H 0.18 0.27 8.06 -52.49 -0.42 -0.15 16 44 H 0.41 2.77 8.20 -40.82 -0.33 2.44 16 45 H 0.41 3.44 8.93 -40.82 -0.36 3.07 16 46 H 0.11 2.52 5.19 -51.92 -0.27 2.26 16 47 H 0.06 1.05 8.13 -51.93 -0.42 0.63 16 LS Contribution 380.71 15.07 5.74 5.74 Total: -1.00 -39.10 380.71 -8.44 -47.54 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.55 Total: 1.40 kcal Atomic # 6 Polarization: 21.36 SS G_CDS: -1.81 Total: 19.55 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -0.34 Total: -71.03 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.45 Total: -21.49 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -39.10 -8.44 -47.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317046248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.263 kcal (2) G-P(sol) polarization free energy of solvation -39.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds