Wall clock time and date at job start Wed Apr 1 2020 06:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99759 * 2 1 4 4 C 1.52999 * 109.47345 * 293.95989 * 3 2 1 5 5 N 1.46502 * 109.47003 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99872 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00053 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99677 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.46808 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.01700 * 306.39118 * 9 8 6 11 11 C 1.54266 * 110.03121 * 185.00243 * 9 8 6 12 12 C 1.54894 * 104.31305 * 216.98718 * 11 9 8 13 13 C 1.55238 * 102.58338 * 37.93170 * 12 11 9 14 14 C 1.53869 * 110.07634 * 67.80800 * 9 8 6 15 15 F 1.39893 * 110.03689 * 238.59239 * 14 9 8 16 16 F 1.39903 * 110.02908 * 359.97346 * 14 9 8 17 17 C 1.46895 * 111.00320 * 123.95973 * 2 1 3 18 18 C 1.50697 * 109.47254 * 66.04255 * 17 2 1 19 19 O 1.21296 * 120.00255 * 0.02562 * 18 17 2 20 20 N 1.34775 * 119.99925 * 179.97438 * 18 17 2 21 21 C 1.37106 * 119.99573 * 180.02562 * 20 18 17 22 22 H 1.07993 * 120.00432 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99708 * 180.02562 * 21 20 18 24 24 N 1.31420 * 119.99735 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00295 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46808 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47214 * 119.99662 * 25 23 21 28 28 H 1.48498 * 109.47058 * 240.00118 * 25 23 21 29 29 H 1.08991 * 109.47864 * 59.99470 * 1 2 3 30 30 H 1.09001 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46676 * 299.99088 * 1 2 3 32 32 H 1.09000 * 109.46958 * 173.95837 * 3 2 1 33 33 H 1.08997 * 109.46859 * 53.95989 * 3 2 1 34 34 H 1.09000 * 109.47217 * 60.00006 * 4 3 2 35 35 H 1.08997 * 109.47142 * 299.99827 * 4 3 2 36 36 H 0.97003 * 120.00077 * 359.97438 * 5 4 3 37 37 H 1.09000 * 109.47176 * 59.99969 * 8 6 5 38 38 H 1.08997 * 109.47178 * 299.99793 * 8 6 5 39 39 H 1.09002 * 110.48629 * 335.73471 * 11 9 8 40 40 H 1.08998 * 110.48744 * 98.24375 * 11 9 8 41 41 H 1.08996 * 110.75388 * 156.31523 * 12 11 9 42 42 H 1.08993 * 110.76071 * 279.69749 * 12 11 9 43 43 H 1.09005 * 110.46917 * 203.39204 * 13 12 11 44 44 H 1.09006 * 110.46947 * 80.77225 * 13 12 11 45 45 H 1.09002 * 109.46896 * 186.04340 * 17 2 1 46 46 H 1.08992 * 109.47076 * 306.04139 * 17 2 1 47 47 H 0.96991 * 120.00447 * 0.02562 * 20 18 17 48 48 H 0.97000 * 119.99564 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0576 -1.3182 5 7 2.1568 3.4251 -1.3183 6 6 1.9554 4.2242 -2.3848 7 8 1.3396 3.8111 -3.3445 8 6 2.4955 5.6312 -2.3847 9 6 2.1315 6.3172 -3.7029 10 1 2.4640 5.7092 -4.5442 11 6 2.7839 7.7135 -3.7696 12 6 1.7265 8.5968 -4.4775 13 6 0.3920 8.0613 -3.8923 14 6 0.6108 6.5383 -3.7809 15 9 0.0903 5.8956 -4.9093 16 9 -0.0047 6.0481 -2.6241 17 6 1.9955 -0.7661 1.1374 18 6 1.6370 -2.2204 0.9727 19 8 1.0054 -2.5833 0.0028 20 7 2.0190 -3.1182 1.9025 21 6 1.6932 -4.4415 1.7522 22 1 1.1309 -4.7645 0.8887 23 6 2.0866 -5.3670 2.7111 24 7 2.7714 -4.9740 3.7617 25 14 1.6435 -7.1700 2.5061 26 1 0.8760 -7.3511 1.2478 27 1 2.8857 -7.9818 2.4501 28 1 0.8159 -7.6103 3.6578 29 1 -0.3634 0.5138 -0.8898 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 3.0797 1.3445 0.1082 33 1 1.5611 1.9273 0.8310 34 1 0.5470 2.0846 -1.4263 35 1 2.0656 1.5018 -2.1491 36 1 2.6490 3.7556 -0.5506 37 1 3.5798 5.6041 -2.2769 38 1 2.0615 6.1869 -1.5535 39 1 2.9848 8.0891 -2.7663 40 1 3.7035 7.6775 -4.3537 41 1 1.8684 9.6473 -4.2239 42 1 1.7612 8.4507 -5.5570 43 1 -0.4352 8.2795 -4.5678 44 1 0.2067 8.4930 -2.9087 45 1 3.0798 -0.6612 1.1754 46 1 1.5613 -0.3874 2.0626 47 1 2.5244 -2.8282 2.6778 48 1 3.0457 -5.6200 4.4312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317458053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:14 Heat of formation + Delta-G solvation = -175.210845 kcal Electronic energy + Delta-G solvation = -30429.721607 eV Core-core repulsion = 25769.047585 eV Total energy + Delta-G solvation = -4660.674022 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.03318 -47.08112 -39.97945 -38.66721 -37.83338 -36.73842 -34.61794 -33.79368 -32.34097 -31.24282 -29.59867 -28.33444 -27.70616 -26.40477 -25.09931 -23.67477 -21.80350 -21.21773 -21.05376 -20.16260 -19.15968 -17.98865 -17.84446 -17.26944 -17.11855 -16.42195 -16.24320 -15.95430 -15.73637 -15.19442 -14.95429 -14.64243 -14.46156 -14.45505 -14.23394 -13.92906 -13.76805 -13.50232 -13.42924 -13.30088 -13.21190 -13.05819 -12.58244 -12.18616 -12.11645 -12.03343 -11.86924 -11.78103 -11.71174 -11.50955 -11.38334 -11.27908 -11.26296 -11.02370 -10.94090 -10.82889 -10.33172 -10.21797 -10.00721 -9.48057 -9.15425 -8.46797 -7.97959 -7.87757 -6.41264 -3.81837 2.51507 2.88353 3.17114 3.27780 3.35359 3.43337 3.55030 3.79117 3.90382 3.91732 4.08058 4.28066 4.40043 4.52189 4.58127 4.70860 4.81270 4.85138 4.87333 4.97979 5.02446 5.08252 5.14101 5.18588 5.24152 5.25929 5.35353 5.41334 5.42148 5.59211 5.65093 5.70541 5.71425 5.87983 5.92494 5.94521 6.03321 6.26839 6.30377 6.58193 7.20786 7.31257 7.35305 7.56394 8.07496 8.08482 8.62580 9.19146 9.55084 10.07042 10.76593 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.038244 B = 0.001540 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.964893 B =18178.296896 C =18473.794332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.045 3.955 4 C 0.122 3.878 5 N -0.730 5.730 6 C 0.511 3.489 7 O -0.529 6.529 8 C -0.135 4.135 9 C -0.118 4.118 10 H 0.109 0.891 11 C -0.119 4.119 12 C -0.122 4.122 13 C -0.166 4.166 14 C 0.293 3.707 15 F -0.190 7.190 16 F -0.197 7.197 17 C 0.047 3.953 18 C 0.444 3.556 19 O -0.576 6.576 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.015 0.985 32 H 0.078 0.922 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.398 0.602 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.601 31.378 -8.978 32.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.002 4.002 5 N -0.382 5.382 6 C 0.297 3.703 7 O -0.405 6.405 8 C -0.175 4.175 9 C -0.138 4.138 10 H 0.127 0.873 11 C -0.157 4.157 12 C -0.160 4.160 13 C -0.204 4.204 14 C 0.257 3.743 15 F -0.171 7.171 16 F -0.178 7.178 17 C -0.084 4.084 18 C 0.229 3.771 19 O -0.459 6.459 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.034 0.966 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.232 0.768 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.907 30.416 -10.608 32.270 hybrid contribution 0.008 -0.398 1.771 1.815 sum 1.914 30.019 -8.838 31.351 Atomic orbital electron populations 1.22627 0.86449 1.04731 0.99155 1.61440 1.08978 1.10467 1.43058 1.22249 1.00654 0.89766 0.95712 1.21326 0.99660 0.80648 0.98517 1.45896 1.58190 1.14465 1.19640 1.20481 0.80000 0.87207 0.82661 1.90775 1.40126 1.75563 1.34069 1.21702 1.03297 0.93656 0.98854 1.22615 0.92490 0.98590 1.00099 0.87272 1.22444 0.98738 0.92516 1.01964 1.22528 0.92810 0.99961 1.00698 1.23469 1.00571 0.91923 1.04418 1.21603 0.90587 0.90198 0.71948 1.93035 1.88403 1.84007 1.51665 1.92984 1.84992 1.89831 1.50026 1.21865 1.00650 0.94237 0.91660 1.19713 0.85493 0.86606 0.85274 1.90498 1.43806 1.80093 1.31546 1.41867 1.49473 1.07365 1.21462 1.19762 1.32815 0.82247 1.07899 0.87825 1.25260 0.96837 1.00576 0.95311 1.69624 1.38188 1.35651 1.10944 0.85798 0.78195 0.81917 0.78428 1.19204 1.20763 1.20806 0.91819 0.88378 0.96635 0.90333 0.94609 0.91194 0.90315 0.76827 0.87758 0.87997 0.90267 0.89950 0.89851 0.90346 0.88977 0.88497 0.89335 0.93366 0.77519 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.96 60.06 0.54 0.84 16 2 N -0.52 -8.62 4.50 -244.38 -1.10 -9.72 16 3 C 0.05 0.55 5.07 -3.82 -0.02 0.53 16 4 C 0.12 1.53 5.60 -4.04 -0.02 1.51 16 5 N -0.73 -7.09 5.56 -60.29 -0.33 -7.43 16 6 C 0.51 5.69 6.73 -10.98 -0.07 5.62 16 7 O -0.53 -8.37 14.57 5.56 0.08 -8.29 16 8 C -0.14 -0.90 4.63 -27.88 -0.13 -1.03 16 9 C -0.12 -0.87 2.40 -89.51 -0.21 -1.08 16 10 H 0.11 0.96 7.80 -51.93 -0.41 0.56 16 11 C -0.12 -0.46 6.35 -25.07 -0.16 -0.62 16 12 C -0.12 -0.48 6.94 -24.55 -0.17 -0.65 16 13 C -0.17 -0.98 6.41 -24.88 -0.16 -1.14 16 14 C 0.29 2.82 1.80 -25.62 -0.05 2.77 16 15 F -0.19 -2.47 16.76 2.25 0.04 -2.44 16 16 F -0.20 -2.33 14.10 2.25 0.03 -2.30 16 17 C 0.05 0.83 5.45 -4.98 -0.03 0.81 16 18 C 0.44 10.49 7.47 -10.99 -0.08 10.41 16 19 O -0.58 -15.61 13.91 5.54 0.08 -15.54 16 20 N -0.56 -14.30 5.29 -10.96 -0.06 -14.35 16 21 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 24 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 25 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 29 H 0.06 0.99 6.47 -51.93 -0.34 0.65 16 30 H 0.10 1.99 5.82 -51.93 -0.30 1.69 16 31 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.85 7.93 -51.93 -0.41 0.43 16 33 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 34 H 0.07 0.99 6.55 -51.93 -0.34 0.65 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.40 2.52 8.47 -40.82 -0.35 2.17 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.53 7.63 -51.93 -0.40 0.14 16 39 H 0.08 0.20 7.86 -51.93 -0.41 -0.21 16 40 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.53 8.11 -51.93 -0.42 0.10 16 44 H 0.10 0.46 8.12 -51.93 -0.42 0.03 16 45 H 0.09 1.39 7.93 -51.93 -0.41 0.98 16 46 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 47 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -35.58 392.76 -7.86 -43.44 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.41 Total: 8.39 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -0.81 Total: 10.00 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.77 Total: -55.30 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.16 Total: -23.82 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.07 Total: -4.74 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.58 -7.86 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317458053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.770 kcal (2) G-P(sol) polarization free energy of solvation -35.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds