Wall clock time and date at job start Wed Apr 1 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99759 * 2 1 4 4 C 1.52999 * 109.47345 * 293.95989 * 3 2 1 5 5 N 1.46502 * 109.47003 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99872 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00053 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99677 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.46808 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.01700 * 306.39118 * 9 8 6 11 11 C 1.54266 * 110.03121 * 185.00243 * 9 8 6 12 12 C 1.54894 * 104.31305 * 216.98718 * 11 9 8 13 13 C 1.55238 * 102.58338 * 37.93170 * 12 11 9 14 14 C 1.53869 * 110.07634 * 67.80800 * 9 8 6 15 15 F 1.39893 * 110.03689 * 238.59239 * 14 9 8 16 16 F 1.39903 * 110.02908 * 359.97346 * 14 9 8 17 17 C 1.46895 * 111.00320 * 123.95973 * 2 1 3 18 18 C 1.50697 * 109.47254 * 66.04255 * 17 2 1 19 19 O 1.21296 * 120.00255 * 0.02562 * 18 17 2 20 20 N 1.34775 * 119.99925 * 179.97438 * 18 17 2 21 21 C 1.37106 * 119.99573 * 180.02562 * 20 18 17 22 22 H 1.07993 * 120.00432 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99708 * 180.02562 * 21 20 18 24 24 N 1.31420 * 119.99735 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00295 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46808 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47214 * 119.99662 * 25 23 21 28 28 H 1.48498 * 109.47058 * 240.00118 * 25 23 21 29 29 H 1.08991 * 109.47864 * 59.99470 * 1 2 3 30 30 H 1.09001 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46676 * 299.99088 * 1 2 3 32 32 H 1.09000 * 109.46958 * 173.95837 * 3 2 1 33 33 H 1.08997 * 109.46859 * 53.95989 * 3 2 1 34 34 H 1.09000 * 109.47217 * 60.00006 * 4 3 2 35 35 H 1.08997 * 109.47142 * 299.99827 * 4 3 2 36 36 H 0.97003 * 120.00077 * 359.97438 * 5 4 3 37 37 H 1.09000 * 109.47176 * 59.99969 * 8 6 5 38 38 H 1.08997 * 109.47178 * 299.99793 * 8 6 5 39 39 H 1.09002 * 110.48629 * 335.73471 * 11 9 8 40 40 H 1.08998 * 110.48744 * 98.24375 * 11 9 8 41 41 H 1.08996 * 110.75388 * 156.31523 * 12 11 9 42 42 H 1.08993 * 110.76071 * 279.69749 * 12 11 9 43 43 H 1.09005 * 110.46917 * 203.39204 * 13 12 11 44 44 H 1.09006 * 110.46947 * 80.77225 * 13 12 11 45 45 H 1.09002 * 109.46896 * 186.04340 * 17 2 1 46 46 H 1.08992 * 109.47076 * 306.04139 * 17 2 1 47 47 H 0.96991 * 120.00447 * 0.02562 * 20 18 17 48 48 H 0.97000 * 119.99564 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0576 -1.3182 5 7 2.1568 3.4251 -1.3183 6 6 1.9554 4.2242 -2.3848 7 8 1.3396 3.8111 -3.3445 8 6 2.4955 5.6312 -2.3847 9 6 2.1315 6.3172 -3.7029 10 1 2.4640 5.7092 -4.5442 11 6 2.7839 7.7135 -3.7696 12 6 1.7265 8.5968 -4.4775 13 6 0.3920 8.0613 -3.8923 14 6 0.6108 6.5383 -3.7809 15 9 0.0903 5.8956 -4.9093 16 9 -0.0047 6.0481 -2.6241 17 6 1.9955 -0.7661 1.1374 18 6 1.6370 -2.2204 0.9727 19 8 1.0054 -2.5833 0.0028 20 7 2.0190 -3.1182 1.9025 21 6 1.6932 -4.4415 1.7522 22 1 1.1309 -4.7645 0.8887 23 6 2.0866 -5.3670 2.7111 24 7 2.7714 -4.9740 3.7617 25 14 1.6435 -7.1700 2.5061 26 1 0.8760 -7.3511 1.2478 27 1 2.8857 -7.9818 2.4501 28 1 0.8159 -7.6103 3.6578 29 1 -0.3634 0.5138 -0.8898 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 3.0797 1.3445 0.1082 33 1 1.5611 1.9273 0.8310 34 1 0.5470 2.0846 -1.4263 35 1 2.0656 1.5018 -2.1491 36 1 2.6490 3.7556 -0.5506 37 1 3.5798 5.6041 -2.2769 38 1 2.0615 6.1869 -1.5535 39 1 2.9848 8.0891 -2.7663 40 1 3.7035 7.6775 -4.3537 41 1 1.8684 9.6473 -4.2239 42 1 1.7612 8.4507 -5.5570 43 1 -0.4352 8.2795 -4.5678 44 1 0.2067 8.4930 -2.9087 45 1 3.0798 -0.6612 1.1754 46 1 1.5613 -0.3874 2.0626 47 1 2.5244 -2.8282 2.6778 48 1 3.0457 -5.6200 4.4312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317458053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:12 Heat of formation + Delta-G solvation = -202.553142 kcal Electronic energy + Delta-G solvation = -30430.907258 eV Core-core repulsion = 25769.047585 eV Total energy + Delta-G solvation = -4661.859673 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -49.83493 -47.92824 -40.86968 -40.34586 -38.47897 -38.01359 -36.01301 -35.47584 -33.28024 -32.91338 -30.68812 -29.16328 -28.75379 -27.30950 -26.66018 -25.03465 -22.37062 -22.23747 -21.78214 -21.00702 -20.86192 -19.85681 -18.69815 -18.11589 -17.89087 -17.61298 -17.25304 -17.09058 -16.77309 -16.56028 -16.27733 -15.96745 -15.62841 -15.41498 -15.18900 -15.05246 -14.94094 -14.73889 -14.42892 -14.41140 -14.25698 -13.80775 -13.77167 -13.46476 -13.22550 -13.04840 -12.93820 -12.79825 -12.58923 -12.57598 -12.51150 -12.39787 -12.18431 -12.15432 -12.11155 -12.08862 -11.57660 -11.46634 -11.42669 -10.92399 -10.29658 -10.09903 -9.99116 -9.25759 -8.46426 -5.94585 1.36364 1.41748 1.55663 1.68301 2.02280 2.06400 2.30744 2.86313 2.90841 3.04905 3.20598 3.27325 3.38818 3.43144 3.79117 3.87722 3.99358 4.05759 4.16431 4.24814 4.30689 4.33747 4.34506 4.43353 4.45826 4.52307 4.59502 4.61179 4.62651 4.67290 4.72811 4.84651 4.86661 4.94676 5.09047 5.11967 5.17827 5.18721 5.36182 5.40951 5.42264 5.84534 6.03799 6.15483 6.56816 6.61977 7.14276 7.30191 7.57656 8.14325 8.71140 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.038244 B = 0.001540 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.964893 B =18178.296896 C =18473.794332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C 0.054 3.946 4 C 0.131 3.869 5 N -0.715 5.715 6 C 0.501 3.499 7 O -0.585 6.585 8 C -0.127 4.127 9 C -0.120 4.120 10 H 0.085 0.915 11 C -0.109 4.109 12 C -0.119 4.119 13 C -0.161 4.161 14 C 0.268 3.732 15 F -0.220 7.220 16 F -0.215 7.215 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.617 6.617 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.276 1.276 27 H -0.270 1.270 28 H -0.271 1.271 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.419 0.581 37 H 0.141 0.859 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.117 0.883 46 H 0.073 0.927 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.578 34.011 -7.281 35.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.073 4.073 4 C 0.006 3.994 5 N -0.369 5.369 6 C 0.289 3.711 7 O -0.465 6.465 8 C -0.166 4.166 9 C -0.139 4.139 10 H 0.103 0.897 11 C -0.146 4.146 12 C -0.156 4.156 13 C -0.198 4.198 14 C 0.232 3.768 15 F -0.201 7.201 16 F -0.196 7.196 17 C -0.070 4.070 18 C 0.226 3.774 19 O -0.503 6.503 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.201 1.201 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.256 0.744 37 H 0.159 0.841 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.127 0.873 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.131 0.869 45 H 0.135 0.865 46 H 0.091 0.909 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.924 33.094 -8.859 34.484 hybrid contribution -0.646 -1.191 1.194 1.806 sum 3.278 31.904 -7.664 32.975 Atomic orbital electron populations 1.22443 0.87071 1.02330 1.00411 1.61324 1.08764 1.13310 1.43148 1.22245 1.01932 0.87258 0.95893 1.21021 0.98263 0.82083 0.98043 1.45737 1.57753 1.13126 1.20258 1.21419 0.78999 0.88872 0.81806 1.90759 1.42649 1.76917 1.36197 1.21804 1.05352 0.90266 0.99194 1.22664 0.90979 1.00651 0.99641 0.89698 1.22475 0.98681 0.89775 1.03664 1.22575 0.91412 1.01303 1.00300 1.23507 1.01818 0.89074 1.05447 1.22460 0.91915 0.92011 0.70432 1.92966 1.88979 1.84877 1.53289 1.92933 1.85487 1.90315 1.50866 1.21737 1.02410 0.89857 0.92994 1.20844 0.83713 0.88939 0.83865 1.90481 1.45228 1.81503 1.33097 1.41917 1.50072 1.06960 1.22190 1.19680 1.34368 0.84147 1.08008 0.90540 1.25994 0.96281 1.04176 0.94695 1.69673 1.38132 1.37056 1.11183 0.84892 0.78252 0.77136 0.78176 1.20068 1.19564 1.19573 0.91312 0.92483 0.94626 0.88005 0.92089 0.93353 0.93026 0.74384 0.84095 0.85761 0.87793 0.88570 0.87276 0.90997 0.89465 0.86876 0.86541 0.90879 0.76908 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 8.96 127.69 1.14 2.00 16 2 N -0.54 -17.51 4.50 -927.08 -4.17 -21.68 16 3 C 0.05 1.19 5.07 86.30 0.44 1.63 16 4 C 0.13 3.22 5.60 86.38 0.48 3.70 16 5 N -0.72 -12.68 5.56 -463.05 -2.57 -15.25 16 6 C 0.50 10.82 6.73 87.66 0.59 11.41 16 7 O -0.59 -19.35 14.57 -3.04 -0.04 -19.39 16 8 C -0.13 -1.36 4.63 29.85 0.14 -1.22 16 9 C -0.12 -1.61 2.40 -10.07 -0.02 -1.63 16 10 H 0.08 1.54 7.80 -2.39 -0.02 1.52 16 11 C -0.11 -0.48 6.35 31.67 0.20 -0.28 16 12 C -0.12 -0.62 6.94 32.01 0.22 -0.40 16 13 C -0.16 -1.68 6.41 31.79 0.20 -1.48 16 14 C 0.27 5.16 1.80 31.32 0.06 5.21 16 15 F -0.22 -6.16 16.76 44.97 0.75 -5.41 16 16 F -0.21 -5.11 14.10 44.97 0.63 -4.48 16 17 C 0.06 2.05 5.45 85.56 0.47 2.51 16 18 C 0.44 21.00 7.47 87.66 0.66 21.65 16 19 O -0.62 -34.77 13.91 -3.08 -0.04 -34.82 16 20 N -0.57 -29.44 5.29 -306.98 -1.62 -31.06 16 21 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 24 N -0.92 -49.43 13.05 21.67 0.28 -49.15 16 25 Si 0.99 43.36 29.55 68.60 2.03 45.38 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 29 H 0.07 2.20 6.47 -2.39 -0.02 2.18 16 30 H 0.06 2.41 5.82 -2.39 -0.01 2.39 16 31 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.10 1.80 7.93 -2.39 -0.02 1.78 16 33 H 0.06 1.09 8.12 -2.39 -0.02 1.07 16 34 H 0.05 1.40 6.55 -2.39 -0.02 1.38 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.42 3.86 8.47 -92.71 -0.79 3.07 16 37 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.12 0.83 7.63 -2.39 -0.02 0.82 16 39 H 0.10 0.00 7.86 -2.39 -0.02 -0.02 16 40 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.07 0.47 8.14 -2.39 -0.02 0.46 16 43 H 0.09 0.97 8.11 -2.38 -0.02 0.95 16 44 H 0.11 0.80 8.12 -2.38 -0.02 0.78 16 45 H 0.12 3.29 7.93 -2.39 -0.02 3.27 16 46 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 47 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 48 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -83.25 392.76 0.58 -82.67 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -0.52 Total: 28.46 kcal Atomic # 6 Polarization: 18.87 SS G_CDS: 5.85 Total: 24.72 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -8.08 Total: -117.14 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -0.09 Total: -54.21 kcal Atomic # 9 Polarization: -11.27 SS G_CDS: 1.39 Total: -9.88 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -83.25 0.58 -82.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317458053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.885 kcal (2) G-P(sol) polarization free energy of solvation -83.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds