Wall clock time and date at job start Wed Apr 1 2020 04:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.46766 * 2 1 4 4 C 1.46498 * 119.99790 * 269.99502 * 3 2 1 5 5 C 1.50697 * 109.47353 * 270.00247 * 4 3 2 6 6 H 1.08000 * 120.00423 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99804 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00237 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99882 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46730 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47220 * 119.99744 * 9 7 5 12 12 H 1.48505 * 109.46941 * 239.99935 * 9 7 5 13 13 C 1.34772 * 119.99997 * 90.00532 * 3 2 1 14 14 O 1.21283 * 119.99969 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99903 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.47010 * 180.02562 * 15 13 3 17 17 C 1.46901 * 110.99793 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.46769 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.46840 * 179.97438 * 18 17 16 20 20 C 1.46504 * 120.00381 * 269.99975 * 19 18 17 21 21 C 1.34781 * 119.99786 * 90.00416 * 19 18 17 22 22 O 1.21281 * 120.00142 * 359.97438 * 21 19 18 23 23 C 1.50703 * 120.00021 * 179.97438 * 21 19 18 24 24 H 1.09001 * 115.54642 * 325.66904 * 23 21 19 25 25 C 1.53000 * 117.50013 * 111.37620 * 23 21 19 26 26 C 1.52995 * 60.00046 * 107.48817 * 25 23 21 27 27 F 1.39901 * 117.50268 * 252.51068 * 26 25 23 28 28 F 1.39907 * 117.51554 * 107.47714 * 26 25 23 29 29 H 1.08997 * 109.46696 * 60.00084 * 1 2 3 30 30 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47290 * 299.99742 * 1 2 3 32 32 H 1.09004 * 109.47170 * 239.99997 * 2 1 3 33 33 H 1.08999 * 109.47206 * 119.99810 * 2 1 3 34 34 H 1.08999 * 109.46938 * 30.00748 * 4 3 2 35 35 H 1.09008 * 109.46928 * 150.00439 * 4 3 2 36 36 H 0.96999 * 119.99906 * 180.02562 * 8 7 5 37 37 H 1.09006 * 109.47061 * 60.01026 * 15 13 3 38 38 H 1.08995 * 109.47155 * 300.00263 * 15 13 3 39 39 H 1.00898 * 110.99995 * 56.04971 * 16 15 13 40 40 H 1.09001 * 109.46874 * 60.00179 * 17 16 15 41 41 H 1.08992 * 109.47407 * 300.00197 * 17 16 15 42 42 H 1.09002 * 109.47398 * 300.00295 * 18 17 16 43 43 H 1.09001 * 109.47194 * 60.00475 * 18 17 16 44 44 H 1.09000 * 109.46899 * 89.99956 * 20 19 18 45 45 H 1.08992 * 109.47334 * 209.99920 * 20 19 18 46 46 H 1.08994 * 109.46680 * 330.00544 * 20 19 18 47 47 H 1.08995 * 117.49974 * 214.98002 * 25 23 21 48 48 H 1.09001 * 117.49591 * 0.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0962 7 6 4.1494 2.3905 -2.8775 8 7 3.3497 3.1273 -3.6171 9 14 5.9135 2.0964 -3.4171 10 1 6.6008 1.2405 -2.4170 11 1 5.9205 1.4182 -4.7381 12 1 6.6216 3.3974 -3.5247 13 6 2.2430 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9914 1.3062 2.4723 16 7 2.3092 2.2064 3.5889 17 6 2.0759 1.5461 4.8802 18 6 2.4177 2.5124 6.0161 19 7 2.1845 1.8540 7.3039 20 6 0.8719 1.9481 7.9477 21 6 3.1777 1.1618 7.8965 22 8 4.2642 1.0836 7.3634 23 6 2.9380 0.4851 9.2215 24 1 2.2604 1.0047 9.8990 25 6 2.9211 -1.0447 9.2407 26 6 4.1050 -0.2852 9.8427 27 9 5.3129 -0.3072 9.1372 28 9 4.2207 -0.2686 11.2368 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0283 35 1 2.0955 3.1411 -1.1384 36 1 3.6757 3.5178 -4.4430 37 1 2.6215 0.4186 2.5302 38 1 0.9434 1.0124 2.5299 39 1 1.7841 3.0654 3.5216 40 1 2.7071 0.6605 4.9546 41 1 1.0288 1.2531 4.9546 42 1 3.4651 2.8049 5.9416 43 1 1.7869 3.3981 5.9419 44 1 0.2451 1.1198 7.6175 45 1 0.9938 1.9024 9.0299 46 1 0.4002 2.8920 7.6747 47 1 2.2323 -1.5318 9.9307 48 1 3.0838 -1.5616 8.2949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317586211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:04 Heat of formation + Delta-G solvation = -148.258685 kcal Electronic energy + Delta-G solvation = -30375.766327 eV Core-core repulsion = 25716.261038 eV Total energy + Delta-G solvation = -4659.505289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -49.69579 -48.38001 -41.18740 -40.71525 -37.81354 -36.95142 -36.61606 -36.05702 -34.89267 -31.74109 -31.21557 -29.32751 -27.69900 -27.17619 -25.30340 -24.52497 -23.79812 -23.56862 -22.99199 -20.39604 -19.88745 -19.25889 -18.65553 -18.03789 -17.99915 -17.69580 -17.52434 -17.07344 -16.78025 -16.53702 -16.48263 -16.03080 -15.86358 -15.12811 -15.03263 -14.83814 -14.71321 -14.64985 -14.51598 -14.44106 -14.33522 -14.09423 -13.83226 -13.70250 -13.48664 -13.37562 -13.21760 -13.09622 -13.04769 -12.84995 -12.68458 -12.50370 -12.29126 -12.19104 -12.07213 -11.85941 -11.69211 -11.16688 -10.95616 -10.65725 -10.58909 -9.80289 -9.48273 -9.35808 -8.23580 -6.37762 1.16489 1.34055 1.37168 1.48802 1.61444 1.84753 2.01999 2.24168 2.29391 2.41768 3.05518 3.09085 3.19649 3.35308 3.52911 3.68799 3.71015 3.99450 4.04382 4.10459 4.27377 4.30128 4.40939 4.43618 4.47186 4.49109 4.56630 4.64803 4.73348 4.76265 4.83147 4.90848 4.97078 4.99376 5.00790 5.05835 5.21606 5.38639 5.40606 5.57833 5.81769 5.92477 6.06732 6.22401 6.33707 6.70466 6.82743 7.01125 7.28210 7.51491 8.83367 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015133 B = 0.001912 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.825025 B =14643.479049 C =15444.522053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.541 4.541 6 H 0.049 0.951 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.270 1.270 11 H -0.266 1.266 12 H -0.282 1.282 13 C 0.493 3.507 14 O -0.586 6.586 15 C 0.063 3.937 16 N -0.694 5.694 17 C 0.061 3.939 18 C 0.118 3.882 19 N -0.602 5.602 20 C 0.065 3.935 21 C 0.528 3.472 22 O -0.570 6.570 23 C -0.185 4.185 24 H 0.188 0.812 25 C -0.111 4.111 26 C 0.187 3.813 27 F -0.170 7.170 28 F -0.161 7.161 29 H 0.038 0.962 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.023 0.977 35 H -0.003 1.003 36 H 0.267 0.733 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.350 0.650 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.176 0.824 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.320 -11.257 30.324 34.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.067 0.933 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.195 1.195 11 H -0.191 1.191 12 H -0.208 1.208 13 C 0.281 3.719 14 O -0.466 6.466 15 C -0.069 4.069 16 N -0.328 5.328 17 C -0.069 4.069 18 C -0.005 4.005 19 N -0.334 5.334 20 C -0.076 4.076 21 C 0.315 3.685 22 O -0.448 6.448 23 C -0.207 4.207 24 H 0.205 0.795 25 C -0.148 4.148 26 C 0.149 3.851 27 F -0.151 7.151 28 F -0.141 7.141 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.041 0.959 35 H 0.015 0.985 36 H 0.076 0.924 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.170 0.830 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.097 0.903 45 H 0.115 0.885 46 H 0.107 0.893 47 H 0.194 0.806 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.873 -10.749 29.876 33.898 hybrid contribution 0.579 0.522 -0.853 1.155 sum -11.294 -10.228 29.023 32.780 Atomic orbital electron populations 1.22139 0.94262 1.03529 1.01745 1.21753 0.95513 0.81338 1.03789 1.48283 1.64051 1.15130 1.06188 1.18681 0.95099 0.91561 0.80508 1.21738 0.98023 1.31787 1.06408 0.93269 1.25841 1.02300 0.94549 0.96505 1.70047 1.37595 1.34230 1.14841 0.85396 0.79172 0.78005 0.78399 1.19468 1.19144 1.20772 1.21272 0.77384 0.86712 0.86519 1.90639 1.47333 1.20753 1.87907 1.21746 1.02204 0.95907 0.86997 1.59854 1.64267 1.07593 1.01069 1.22170 1.00113 0.97251 0.87382 1.21341 1.02710 0.95225 0.81226 1.47782 1.13422 1.51244 1.20927 1.22278 0.81636 1.04372 0.99300 1.19920 0.83772 0.78871 0.85905 1.90840 1.26181 1.61485 1.66304 1.23785 1.01062 0.98482 0.97336 0.79454 1.24474 0.94785 0.90732 1.04849 1.20073 0.80021 1.10795 0.74162 1.93074 1.47717 1.97022 1.77255 1.93036 1.96581 1.97112 1.27416 0.94280 0.88597 0.91944 0.91148 0.88425 0.95863 0.98512 0.92400 0.87576 0.89165 0.83010 0.92359 0.92177 0.92208 0.87813 0.90326 0.88497 0.89339 0.80637 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 10.24 71.98 0.74 -2.95 16 2 C 0.10 2.96 5.93 86.38 0.51 3.47 16 3 N -0.60 -25.80 2.46 -826.14 -2.03 -27.82 16 4 C 0.26 14.46 5.16 85.63 0.44 14.90 16 5 C -0.54 -32.17 9.39 25.60 0.24 -31.93 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 9 Si 0.97 46.51 29.54 68.60 2.03 48.54 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 C 0.49 20.71 7.71 87.66 0.68 21.39 16 14 O -0.59 -31.06 15.78 -3.04 -0.05 -31.11 16 15 C 0.06 1.77 4.72 85.56 0.40 2.18 16 16 N -0.69 -19.14 6.12 -517.92 -3.17 -22.31 16 17 C 0.06 1.19 6.01 86.30 0.52 1.71 16 18 C 0.12 2.17 5.71 86.38 0.49 2.67 16 19 N -0.60 -8.12 2.87 -846.76 -2.43 -10.55 16 20 C 0.07 0.19 10.31 127.77 1.32 1.51 16 21 C 0.53 9.94 7.46 87.66 0.65 10.59 16 22 O -0.57 -17.55 14.72 -3.03 -0.04 -17.59 16 23 C -0.19 -1.87 5.27 -11.54 -0.06 -1.93 16 24 H 0.19 0.32 6.44 -2.39 -0.02 0.30 16 25 C -0.11 -0.71 10.20 30.59 0.31 -0.40 16 26 C 0.19 2.99 5.19 30.59 0.16 3.14 16 27 F -0.17 -4.46 15.71 44.97 0.71 -3.75 16 28 F -0.16 -2.58 17.60 44.97 0.79 -1.79 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.29 7.22 -2.39 -0.02 1.27 16 32 H 0.07 2.29 8.07 -2.38 -0.02 2.27 16 33 H 0.10 2.27 6.44 -2.39 -0.02 2.25 16 34 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 35 H 0.00 -0.21 7.42 -2.38 -0.02 -0.22 16 36 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.11 2.76 7.40 -2.38 -0.02 2.75 16 38 H 0.09 1.85 7.18 -2.39 -0.02 1.83 16 39 H 0.35 9.56 8.43 -89.70 -0.76 8.80 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 1.59 7.42 -2.39 -0.02 1.57 16 43 H 0.10 1.41 7.89 -2.39 -0.02 1.39 16 44 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.10 -0.16 5.99 -2.39 -0.01 -0.17 16 46 H 0.09 0.12 7.89 -2.39 -0.02 0.10 16 47 H 0.18 -0.33 8.14 -2.39 -0.02 -0.35 16 48 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -91.08 407.18 3.18 -87.90 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.23 Total: 10.12 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 6.87 Total: 25.21 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -7.35 Total: -117.53 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -0.09 Total: -48.71 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 1.50 Total: -5.54 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -91.08 3.18 -87.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317586211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.354 kcal (2) G-P(sol) polarization free energy of solvation -91.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds