Wall clock time and date at job start Wed Apr 1 2020 04:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47304 * 2 1 4 4 C 1.46496 * 119.99880 * 270.00471 * 3 2 1 5 5 C 1.50703 * 109.47077 * 269.99336 * 4 3 2 6 6 H 1.08005 * 119.99703 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00292 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00272 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47148 * 89.99653 * 9 7 5 11 11 H 1.48496 * 109.47010 * 210.00013 * 9 7 5 12 12 H 1.48497 * 109.46708 * 330.00096 * 9 7 5 13 13 C 1.34777 * 119.99854 * 89.99731 * 3 2 1 14 14 O 1.21274 * 120.00135 * 180.27973 * 13 3 2 15 15 C 1.50706 * 119.99766 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.46577 * 179.97438 * 15 13 3 17 17 C 1.46905 * 110.99800 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47234 * 179.97438 * 17 16 15 19 19 N 1.46495 * 109.47056 * 180.02562 * 18 17 16 20 20 C 1.46505 * 119.99953 * 269.99962 * 19 18 17 21 21 C 1.34769 * 120.00590 * 89.99944 * 19 18 17 22 22 O 1.21286 * 119.99889 * 359.97438 * 21 19 18 23 23 C 1.50705 * 120.00282 * 180.02562 * 21 19 18 24 24 H 1.08993 * 115.54983 * 34.32851 * 23 21 19 25 25 C 1.53007 * 117.49435 * 248.61884 * 23 21 19 26 26 C 1.52995 * 60.00000 * 252.51291 * 25 23 21 27 27 F 1.39903 * 117.49918 * 252.51306 * 26 25 23 28 28 F 1.39897 * 117.50145 * 107.49521 * 26 25 23 29 29 H 1.08996 * 109.47306 * 59.99842 * 1 2 3 30 30 H 1.09007 * 109.46888 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47070 * 299.99586 * 1 2 3 32 32 H 1.09001 * 109.46783 * 240.00151 * 2 1 3 33 33 H 1.08996 * 109.47306 * 120.00158 * 2 1 3 34 34 H 1.08997 * 109.47682 * 29.99532 * 4 3 2 35 35 H 1.09004 * 109.47271 * 149.99629 * 4 3 2 36 36 H 0.96999 * 119.99754 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47161 * 299.99737 * 15 13 3 38 38 H 1.09001 * 109.46740 * 59.99879 * 15 13 3 39 39 H 1.00891 * 111.00138 * 56.04738 * 16 15 13 40 40 H 1.08993 * 109.47004 * 300.00108 * 17 16 15 41 41 H 1.09002 * 109.47091 * 59.99861 * 17 16 15 42 42 H 1.09001 * 109.47170 * 299.99770 * 18 17 16 43 43 H 1.08989 * 109.46804 * 59.99859 * 18 17 16 44 44 H 1.08996 * 109.47189 * 89.99426 * 20 19 18 45 45 H 1.08998 * 109.47695 * 210.00144 * 20 19 18 46 46 H 1.09007 * 109.46610 * 330.00231 * 20 19 18 47 47 H 1.09000 * 117.50027 * 0.02562 * 25 23 21 48 48 H 1.08997 * 117.49377 * 145.01742 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0961 7 6 4.1494 2.3905 -2.8774 8 7 3.3493 3.1266 -3.6176 9 14 5.9134 2.0965 -3.4171 10 1 5.9761 0.8760 -4.2606 11 1 6.3929 3.2641 -4.1993 12 1 6.7735 1.9156 -2.2201 13 6 2.2430 2.0166 1.1672 14 8 2.6424 3.1616 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3109 2.2058 3.5889 17 6 2.0785 1.5451 4.8802 18 6 2.4212 2.5110 6.0162 19 7 2.1900 1.8520 7.3040 20 6 0.8781 1.9451 7.9494 21 6 3.1841 1.1600 7.8950 22 8 4.2700 1.0825 7.3605 23 6 2.9460 0.4816 9.2195 24 1 1.9435 0.0809 9.3689 25 6 3.6714 1.0460 10.4427 26 6 4.1142 -0.2882 9.8389 27 9 3.8137 -1.4524 10.5542 28 9 5.3215 -0.3086 9.1324 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.5817 1.6878 -2.0284 35 1 2.0955 3.1411 -1.1384 36 1 3.6753 3.5170 -4.4435 37 1 0.9444 1.0114 2.5302 38 1 2.6228 0.4186 2.5298 39 1 1.7859 3.0647 3.5221 40 1 1.0313 1.2523 4.9553 41 1 2.7096 0.6595 4.9540 42 1 3.4685 2.8034 5.9410 43 1 1.7905 3.3968 5.9426 44 1 0.2513 1.1167 7.6195 45 1 1.0013 1.8990 9.0314 46 1 0.4056 2.8890 7.6774 47 1 4.3204 1.9082 10.2896 48 1 3.1459 1.0168 11.3972 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317586212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:25 Heat of formation + Delta-G solvation = -121.569879 kcal Electronic energy + Delta-G solvation = -30338.545686 eV Core-core repulsion = 25680.197710 eV Total energy + Delta-G solvation = -4658.347975 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -49.06441 -47.69918 -40.47872 -39.11094 -36.98130 -35.99592 -35.46241 -34.93749 -32.76178 -30.41514 -30.03383 -27.74499 -27.11566 -25.90683 -24.29362 -23.08535 -22.99301 -22.33154 -22.02714 -19.76976 -18.64838 -18.32989 -17.38970 -17.01179 -16.74454 -16.52744 -16.31735 -16.11127 -15.90936 -15.54314 -15.16352 -14.50732 -14.43397 -14.33438 -14.28130 -14.07310 -13.85211 -13.63393 -13.49185 -13.40557 -13.34489 -13.09727 -12.83284 -12.82457 -12.52867 -12.21931 -11.96495 -11.76443 -11.70553 -11.61657 -11.25573 -11.13860 -10.87805 -10.71392 -10.64702 -10.49239 -10.24006 -10.08564 -9.58935 -9.20475 -8.85743 -8.39569 -8.36568 -7.62529 -6.00502 -4.04683 1.77285 2.24609 2.52485 2.79632 3.33937 3.40384 3.43315 3.49611 3.61312 3.63264 3.81638 4.08216 4.18642 4.37885 4.50631 4.56699 4.72840 4.77618 4.84214 4.93929 4.99924 5.09694 5.15859 5.16676 5.23379 5.28227 5.34235 5.40848 5.58473 5.64266 5.67771 5.76622 5.78418 6.00810 6.05304 6.22971 6.46241 6.80851 6.84673 7.13682 7.38212 7.47583 7.59371 7.67981 7.96565 8.27894 8.46186 8.95078 9.14888 9.60487 11.07543 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.001903 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.564161 B =14713.354913 C =15462.986444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.505 3.495 14 O -0.528 6.528 15 C 0.044 3.956 16 N -0.668 5.668 17 C 0.048 3.952 18 C 0.117 3.883 19 N -0.609 5.609 20 C 0.074 3.926 21 C 0.538 3.462 22 O -0.507 6.507 23 C -0.197 4.197 24 H 0.149 0.851 25 C -0.148 4.148 26 C 0.230 3.770 27 F -0.156 7.156 28 F -0.136 7.136 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.350 0.650 40 H 0.028 0.972 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.129 0.871 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.033 -6.452 29.779 32.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.290 3.710 14 O -0.404 6.404 15 C -0.088 4.088 16 N -0.301 5.301 17 C -0.082 4.082 18 C -0.006 4.006 19 N -0.343 5.343 20 C -0.069 4.069 21 C 0.324 3.676 22 O -0.381 6.381 23 C -0.219 4.219 24 H 0.167 0.833 25 C -0.186 4.186 26 C 0.193 3.807 27 F -0.137 7.137 28 F -0.116 7.116 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.169 0.831 40 H 0.046 0.954 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.147 0.853 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.531 -5.937 29.267 31.058 hybrid contribution -0.201 -0.555 -0.424 0.727 sum -8.732 -6.493 28.844 30.828 Atomic orbital electron populations 1.22218 0.96923 1.01332 1.02177 1.21403 0.93365 0.84373 1.02688 1.48252 1.63992 1.13221 1.07714 1.19251 0.96252 0.93598 0.78074 1.21450 0.96946 1.31712 1.06176 0.92456 1.24937 0.97871 0.94935 0.96436 1.69935 1.35689 1.33579 1.14340 0.86496 0.84747 0.77604 0.78606 1.20698 1.21112 1.19809 1.20152 0.78851 0.87141 0.84848 1.90671 1.44978 1.17865 1.86918 1.21885 0.99810 0.96714 0.90399 1.59924 1.63193 1.07145 0.99866 1.22263 0.98823 0.98166 0.88987 1.21484 1.04476 0.94337 0.80256 1.47677 1.12136 1.52737 1.21796 1.21906 0.83895 1.02947 0.98128 1.19267 0.84339 0.79001 0.84996 1.90862 1.23785 1.59039 1.64385 1.23682 0.99952 1.03322 0.94981 0.83327 1.24291 1.01170 0.95989 0.97145 1.19456 0.83517 0.83186 0.94550 1.93059 1.92739 1.50267 1.77586 1.93155 1.43981 1.96503 1.77978 0.91999 0.92215 0.93315 0.89900 0.91867 0.95086 0.93935 0.92787 0.93041 0.88702 0.83091 0.95387 0.90592 0.88317 0.90051 0.92257 0.90755 0.90401 0.85252 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.11 1.70 5.93 -4.04 -0.02 1.68 16 3 N -0.60 -12.72 2.46 -175.06 -0.43 -13.15 16 4 C 0.25 6.53 5.16 -5.19 -0.03 6.50 16 5 C -0.52 -15.16 9.39 -34.44 -0.32 -15.49 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 9 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.50 10.59 7.71 -10.98 -0.08 10.51 16 14 O -0.53 -13.46 15.78 5.56 0.09 -13.37 16 15 C 0.04 0.68 4.72 -4.97 -0.02 0.65 16 16 N -0.67 -9.65 6.13 -115.05 -0.70 -10.36 16 17 C 0.05 0.53 6.01 -3.82 -0.02 0.51 16 18 C 0.12 1.13 5.71 -4.04 -0.02 1.10 16 19 N -0.61 -4.76 2.87 -181.57 -0.52 -5.28 16 20 C 0.07 0.27 10.05 59.85 0.60 0.87 16 21 C 0.54 5.31 7.46 -10.99 -0.08 5.22 16 22 O -0.51 -7.45 14.72 5.55 0.08 -7.36 16 23 C -0.20 -1.24 4.78 -91.77 -0.44 -1.68 16 24 H 0.15 0.49 7.26 -51.93 -0.38 0.11 16 25 C -0.15 -0.67 10.20 -26.73 -0.27 -0.94 16 26 C 0.23 1.93 5.19 -26.73 -0.14 1.79 16 27 F -0.16 -1.34 17.60 2.25 0.04 -1.30 16 28 F -0.14 -1.68 15.71 2.25 0.04 -1.64 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16 32 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 33 H 0.06 0.86 6.44 -51.93 -0.33 0.52 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.05 0.65 7.19 -51.93 -0.37 0.28 16 38 H 0.09 1.39 7.40 -51.93 -0.38 1.01 16 39 H 0.35 4.90 8.43 -39.30 -0.33 4.57 16 40 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.10 1.22 7.42 -51.93 -0.39 0.84 16 43 H 0.08 0.62 7.89 -51.94 -0.41 0.21 16 44 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 45 H 0.07 0.12 6.64 -51.93 -0.34 -0.22 16 46 H 0.08 0.21 7.89 -51.92 -0.41 -0.20 16 47 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.13 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 407.89 15.07 6.15 6.15 Total: -1.00 -37.77 407.89 -7.58 -45.35 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.45 Total: -0.73 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -0.58 Total: 10.55 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.92 Total: -55.05 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.17 Total: -20.73 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -37.77 -7.58 -45.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317586212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.221 kcal (2) G-P(sol) polarization free energy of solvation -37.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds