Wall clock time and date at job start Wed Apr 1 2020 04:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47304 * 2 1 4 4 C 1.46496 * 119.99880 * 270.00471 * 3 2 1 5 5 C 1.50703 * 109.47077 * 269.99336 * 4 3 2 6 6 H 1.08005 * 119.99703 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00292 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00272 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47148 * 89.99653 * 9 7 5 11 11 H 1.48496 * 109.47010 * 210.00013 * 9 7 5 12 12 H 1.48497 * 109.46708 * 330.00096 * 9 7 5 13 13 C 1.34777 * 119.99854 * 89.99731 * 3 2 1 14 14 O 1.21274 * 120.00135 * 180.27973 * 13 3 2 15 15 C 1.50706 * 119.99766 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.46577 * 179.97438 * 15 13 3 17 17 C 1.46905 * 110.99800 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47234 * 179.97438 * 17 16 15 19 19 N 1.46495 * 109.47056 * 180.02562 * 18 17 16 20 20 C 1.46505 * 119.99953 * 269.99962 * 19 18 17 21 21 C 1.34769 * 120.00590 * 89.99944 * 19 18 17 22 22 O 1.21286 * 119.99889 * 359.97438 * 21 19 18 23 23 C 1.50705 * 120.00282 * 180.02562 * 21 19 18 24 24 H 1.08993 * 115.54983 * 34.32851 * 23 21 19 25 25 C 1.53007 * 117.49435 * 248.61884 * 23 21 19 26 26 C 1.52995 * 60.00000 * 252.51291 * 25 23 21 27 27 F 1.39903 * 117.49918 * 252.51306 * 26 25 23 28 28 F 1.39897 * 117.50145 * 107.49521 * 26 25 23 29 29 H 1.08996 * 109.47306 * 59.99842 * 1 2 3 30 30 H 1.09007 * 109.46888 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47070 * 299.99586 * 1 2 3 32 32 H 1.09001 * 109.46783 * 240.00151 * 2 1 3 33 33 H 1.08996 * 109.47306 * 120.00158 * 2 1 3 34 34 H 1.08997 * 109.47682 * 29.99532 * 4 3 2 35 35 H 1.09004 * 109.47271 * 149.99629 * 4 3 2 36 36 H 0.96999 * 119.99754 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47161 * 299.99737 * 15 13 3 38 38 H 1.09001 * 109.46740 * 59.99879 * 15 13 3 39 39 H 1.00891 * 111.00138 * 56.04738 * 16 15 13 40 40 H 1.08993 * 109.47004 * 300.00108 * 17 16 15 41 41 H 1.09002 * 109.47091 * 59.99861 * 17 16 15 42 42 H 1.09001 * 109.47170 * 299.99770 * 18 17 16 43 43 H 1.08989 * 109.46804 * 59.99859 * 18 17 16 44 44 H 1.08996 * 109.47189 * 89.99426 * 20 19 18 45 45 H 1.08998 * 109.47695 * 210.00144 * 20 19 18 46 46 H 1.09007 * 109.46610 * 330.00231 * 20 19 18 47 47 H 1.09000 * 117.50027 * 0.02562 * 25 23 21 48 48 H 1.08997 * 117.49377 * 145.01742 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0961 7 6 4.1494 2.3905 -2.8774 8 7 3.3493 3.1266 -3.6176 9 14 5.9134 2.0965 -3.4171 10 1 5.9761 0.8760 -4.2606 11 1 6.3929 3.2641 -4.1993 12 1 6.7735 1.9156 -2.2201 13 6 2.2430 2.0166 1.1672 14 8 2.6424 3.1616 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3109 2.2058 3.5889 17 6 2.0785 1.5451 4.8802 18 6 2.4212 2.5110 6.0162 19 7 2.1900 1.8520 7.3040 20 6 0.8781 1.9451 7.9494 21 6 3.1841 1.1600 7.8950 22 8 4.2700 1.0825 7.3605 23 6 2.9460 0.4816 9.2195 24 1 1.9435 0.0809 9.3689 25 6 3.6714 1.0460 10.4427 26 6 4.1142 -0.2882 9.8389 27 9 3.8137 -1.4524 10.5542 28 9 5.3215 -0.3086 9.1324 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.5817 1.6878 -2.0284 35 1 2.0955 3.1411 -1.1384 36 1 3.6753 3.5170 -4.4435 37 1 0.9444 1.0114 2.5302 38 1 2.6228 0.4186 2.5298 39 1 1.7859 3.0647 3.5221 40 1 1.0313 1.2523 4.9553 41 1 2.7096 0.6595 4.9540 42 1 3.4685 2.8034 5.9410 43 1 1.7905 3.3968 5.9426 44 1 0.2513 1.1167 7.6195 45 1 1.0013 1.8990 9.0314 46 1 0.4056 2.8890 7.6774 47 1 4.3204 1.9082 10.2896 48 1 3.1459 1.0168 11.3972 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317586212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:21 Heat of formation + Delta-G solvation = -149.381620 kcal Electronic energy + Delta-G solvation = -30339.751693 eV Core-core repulsion = 25680.197710 eV Total energy + Delta-G solvation = -4659.553983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -49.69753 -48.38251 -41.18839 -40.72684 -37.82412 -36.96034 -36.61958 -36.06046 -34.89565 -31.74798 -31.21833 -29.32900 -27.69988 -27.18552 -25.31465 -24.53399 -23.79871 -23.55305 -22.99428 -20.43054 -19.90950 -19.20857 -18.65745 -18.05464 -17.99283 -17.68215 -17.53300 -17.09762 -16.80372 -16.65230 -16.36709 -16.01868 -15.81521 -15.23778 -15.03259 -14.85926 -14.72852 -14.61240 -14.50611 -14.46263 -14.33783 -14.05579 -13.83765 -13.70675 -13.46696 -13.38668 -13.22379 -13.11242 -13.06766 -12.86356 -12.67600 -12.50926 -12.31273 -12.19325 -12.08454 -11.87119 -11.72444 -11.18315 -10.95813 -10.65103 -10.59987 -9.80734 -9.49627 -9.37194 -8.23659 -6.37973 1.13837 1.34147 1.37497 1.48012 1.65127 1.83635 2.01784 2.19291 2.30267 2.41947 3.05356 3.09670 3.19549 3.32986 3.52713 3.68378 3.74484 3.99768 4.03046 4.09142 4.25463 4.33047 4.40627 4.43946 4.45438 4.47306 4.56404 4.63391 4.70944 4.75689 4.81205 4.89728 4.96082 4.98155 4.99318 5.04934 5.20978 5.37546 5.40964 5.57116 5.80531 5.91117 6.06383 6.22386 6.33158 6.69780 6.81543 7.00876 7.27802 7.50297 8.83118 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.001903 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.564161 B =14713.354913 C =15462.986444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.542 4.542 6 H 0.049 0.951 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.494 3.506 14 O -0.585 6.585 15 C 0.062 3.938 16 N -0.692 5.692 17 C 0.059 3.941 18 C 0.120 3.880 19 N -0.602 5.602 20 C 0.064 3.936 21 C 0.528 3.472 22 O -0.569 6.569 23 C -0.185 4.185 24 H 0.187 0.813 25 C -0.111 4.111 26 C 0.187 3.813 27 F -0.161 7.161 28 F -0.170 7.170 29 H 0.039 0.961 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.023 0.977 35 H -0.003 1.003 36 H 0.267 0.733 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.351 0.649 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.126 0.874 48 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.064 -7.815 32.230 35.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.581 4.581 6 H 0.067 0.933 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.202 1.202 13 C 0.282 3.718 14 O -0.465 6.465 15 C -0.069 4.069 16 N -0.326 5.326 17 C -0.071 4.071 18 C -0.004 4.004 19 N -0.334 5.334 20 C -0.077 4.077 21 C 0.316 3.684 22 O -0.448 6.448 23 C -0.206 4.206 24 H 0.204 0.796 25 C -0.149 4.149 26 C 0.150 3.850 27 F -0.141 7.141 28 F -0.151 7.151 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.041 0.959 35 H 0.015 0.985 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.171 0.829 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.124 0.876 44 H 0.092 0.908 45 H 0.118 0.882 46 H 0.109 0.891 47 H 0.144 0.856 48 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.637 -7.345 31.752 34.282 hybrid contribution 0.369 -0.114 -1.174 1.236 sum -10.269 -7.459 30.578 33.107 Atomic orbital electron populations 1.22137 0.94252 1.03514 1.01764 1.21746 0.95525 0.81375 1.03752 1.48284 1.64037 1.15118 1.06214 1.18680 0.95094 0.91576 0.80457 1.21706 0.98030 1.31896 1.06480 0.93318 1.25838 1.02323 0.94511 0.96475 1.70044 1.37665 1.34176 1.14774 0.85442 0.79107 0.78313 0.78110 1.18667 1.20418 1.20208 1.21238 0.77364 0.86733 0.86475 1.90633 1.47454 1.20559 1.87894 1.21748 1.02150 0.95930 0.87120 1.59855 1.64218 1.07571 1.00984 1.22187 0.99990 0.97314 0.87616 1.21334 1.02853 0.95121 0.81075 1.47772 1.13422 1.51382 1.20864 1.22269 0.81608 1.04290 0.99494 1.19941 0.83760 0.78721 0.86011 1.90840 1.26353 1.61363 1.66222 1.23755 1.00825 1.02458 0.93601 0.79551 1.24486 0.99486 0.92986 0.97930 1.20071 0.83384 0.84778 0.96771 1.93036 1.92655 1.50822 1.77629 1.93073 1.46195 1.96724 1.79072 0.94192 0.88641 0.91976 0.91114 0.88544 0.95865 0.98452 0.92384 0.89222 0.87737 0.82929 0.92337 0.92688 0.92001 0.87609 0.90836 0.88156 0.89108 0.85577 0.80593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 10.24 71.98 0.74 -3.05 16 2 C 0.10 3.02 5.93 86.38 0.51 3.54 16 3 N -0.60 -26.10 2.46 -826.15 -2.03 -28.13 16 4 C 0.26 14.56 5.16 85.63 0.44 15.00 16 5 C -0.54 -32.41 9.39 25.60 0.24 -32.17 16 6 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 9 Si 0.97 46.64 29.54 68.60 2.03 48.67 16 10 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 13 C 0.49 21.00 7.71 87.66 0.68 21.67 16 14 O -0.59 -31.16 15.78 -3.01 -0.05 -31.21 16 15 C 0.06 1.80 4.72 85.56 0.40 2.20 16 16 N -0.69 -19.49 6.13 -517.91 -3.17 -22.67 16 17 C 0.06 1.21 6.01 86.30 0.52 1.72 16 18 C 0.12 2.19 5.71 86.38 0.49 2.69 16 19 N -0.60 -8.14 2.87 -846.77 -2.43 -10.57 16 20 C 0.06 0.19 10.05 127.77 1.28 1.47 16 21 C 0.53 9.95 7.46 87.66 0.65 10.61 16 22 O -0.57 -17.55 14.72 -3.05 -0.04 -17.60 16 23 C -0.18 -1.86 4.78 -11.54 -0.06 -1.92 16 24 H 0.19 0.36 7.26 -2.39 -0.02 0.34 16 25 C -0.11 -0.69 10.20 30.59 0.31 -0.37 16 26 C 0.19 2.99 5.19 30.59 0.16 3.15 16 27 F -0.16 -2.60 17.60 44.97 0.79 -1.81 16 28 F -0.17 -4.46 15.71 44.97 0.71 -3.75 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.06 1.32 7.22 -2.39 -0.02 1.31 16 32 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 33 H 0.10 2.33 6.44 -2.39 -0.02 2.32 16 34 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 35 H 0.00 -0.17 7.42 -2.38 -0.02 -0.19 16 36 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.09 1.92 7.19 -2.39 -0.02 1.90 16 38 H 0.10 2.84 7.40 -2.39 -0.02 2.83 16 39 H 0.35 9.67 8.43 -89.70 -0.76 8.92 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.61 7.42 -2.39 -0.02 1.60 16 43 H 0.11 1.40 7.89 -2.39 -0.02 1.38 16 44 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.10 -0.19 6.64 -2.39 -0.02 -0.21 16 46 H 0.09 0.09 7.89 -2.38 -0.02 0.08 16 47 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.18 -0.39 8.14 -2.39 -0.02 -0.41 16 Total: -1.00 -91.00 407.89 3.14 -87.85 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.22 Total: 10.70 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 6.84 Total: 25.44 kcal Atomic # 7 Polarization: -110.95 SS G_CDS: -7.35 Total: -118.30 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.09 Total: -48.81 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 1.50 Total: -5.56 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -91.00 3.14 -87.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317586212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.528 kcal (2) G-P(sol) polarization free energy of solvation -90.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds